jgi.p|Nanoce1779_2|574931, mRNA_991 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574931
Unique NamemRNA_991
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1203
Alignment locationscaffold_2:954881..956083 +

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Properties
Property NameValue
TranscriptId575017
TrackFilteredModels2
ProteinId574931
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:954881..956083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574931gene_991Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574931mRNA_991-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_991CDS_991Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_991 ID=mRNA_991|Name=jgi.p|Nanoce1779_2|574931|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
ACAGGTCAGGCACAAATTAGCCTTGACTCTCAACGATGCTCCGCGCCAAG
AAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGCGGCCGCCAAGATGGA
CGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAAAGCATGGAGGCGGGG
CACATGACGGCGGGGCCCCAGCTACGGAAGAAGGGATGGTGAGCATCTTA
GGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAGCAAGGGTCGACGTCG
GCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAGCGGAAGTGGAGCTAG
GCACGGCGGCTACCCTTACGTTTCCCAACCCCAACGATCTCACTGATTTC
TTGGTGGAGATTATGCCGGAATCAGGCTTCTGGACGGGGGCTAGGTTTAA
GTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATACCCCTCCCAAGGTCA
TCTGCCAGACGCGTATTTTGCACCCCAACATTGATTGGGAGGGAAATGTC
TGCTTGAATATTTTGCGGGAGGAATGGAAGCCAATCTTAGACGTGAATGC
TATTATTTATGGGTTGTTGCACTTGTTTGCAGAGCCCAATCCGGATGATC
CTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCGGATATCCGACAGTTT
GAGCGGATCGTGAAGCAGACGTTGCGGGGGTCCAATTATCAGGGACATAG
CTTTGAGAGGCTCGTATGAAGGGAAAGGCGAGGGCGAGGGGTACTAGGGA
GGGATGGATGGAAGGAGGCAGGCGGAAAGGGAGTGAAAGAGCGTTCAAGG
TCGTTGAGGAGGGGGATGACCCCCCGAATTGGGACATCCGCGCTTGTACA
GGAGCGTAATAATACGAGGGAATACAACAGCAGCGGCAGCAGGAAAAATA
GCAAGAATAACAACGAGCAGGAGCAGAAGGAGCAGCAATAACCATAGCAG
CAGCAGGAGCAGCAGCATCAGCGGCAACAGCGGCAGCAGCAACGGCAGCA
GCAGCAGCACCATCACCACTGCGAAATCACTTCAGCAGCAGCAATGACCA
GAGACAAGAAAATAGAGAGCTAGAGGAAGAGAAAATAGTTACACAGGAGA
AATCGAGTGAGAAAAAAGGGAATAAAGCGAGAGAGAGTGAGGGATATCGC
GCTCAAGTAGGAAAAAGGAAATCCATGAAAGAAGTAAGAAAGGAAAGTAC
AAA
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protein sequence of jgi.p|Nanoce1779_2|574931

>mRNA_991-protein ID=mRNA_991-protein|Name=jgi.p|Nanoce1779_2|574931|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MLRAKKKKEEEAAAAAAAAKMDVDGGSSSSSSAKHGGGAHDGGAPATEEG
MVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPN
DLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNID
WEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRA
DIRQFERIVKQTLRGSNYQGHSFERLV*
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mRNA from alignment at scaffold_2:954881..956083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_991 ID=mRNA_991|Name=jgi.p|Nanoce1779_2|574931|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp|location=Sequence derived from alignment at scaffold_2:954881..956083+ (Nannochloropsis oceanica)
ACAGGTCAGGCACAAATTAGCCTTGACTCTCAACGATGCTCCGCGCCAAG
AAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGCGGCCGCCAAGATGGA
CGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAAAGCATGGAGGCGGGG
CACATGACGGCGGGGCCCCAGCTACGGAAGAAGGGATGGTGAGCATCTTA
GGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAGCAAGGGTCGACGTCG
GCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAGCGGAAGTGGAGCTAG
GCACGGCGGCTACCCTTACGTTTCCCAACCCCAACGATCTCACTGATTTC
TTGGTGGAGATTATGCCGGAATCAGGCTTCTGGACGGGGGCTAGGTTTAA
GTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATACCCCTCCCAAGGTCA
TCTGCCAGACGCGTATTTTGCACCCCAACATTGATTGGGAGGGAAATGTC
TGCTTGAATATTTTGCGGGAGGAATGGAAGCCAATCTTAGACGTGAATGC
TATTATTTATGGGTTGTTGCACTTGTTTGCAGAGCCCAATCCGGATGATC
CTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCGGATATCCGACAGTTT
GAGCGGATCGTGAAGCAGACGTTGCGGGGGTCCAATTATCAGGGACATAG
CTTTGAGAGGCTCGTATGAAGGGAAAGGCGAGGGCGAGGGGTACTAGGGA
GGGATGGATGGAAGGAGGCAGGCGGAAAGGGAGTGAAAGAGCGTTCAAGG
TCGTTGAGGAGGGGGATGACCCCCCGAATTGGGACATCCGCGCTTGTACA
GGAGCGTAATAATACGAGGGAATACAACAGCAGCGGCAGCAGGAAAAATA
GCAAGAATAACAACGAGCAGGAGCAGAAGGAGCAGCAATAACCATAGCAG
CAGCAGGAGCAGCAGCATCAGCGGCAACAGCGGCAGCAGCAACGGCAGCA
GCAGCAGCACCATCACCACTGCGAAATCACTTCAGCAGCAGCAATGACCA
GAGACAAGAAAATAGAGAGCTAGAGGAAGAGAAAATAGTTACACAGGAGA
AATCGAGTGAGAAAAAAGGGAATAAAGCGAGAGAGAGTGAGGGATATCGC
GCTCAAGTAGGAAAAAGGAAATCCATGAAAGAAGTAAGAAAGGAAAGTAC
AAA
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Coding sequence (CDS) from alignment at scaffold_2:954881..956083+

>mRNA_991 ID=mRNA_991|Name=jgi.p|Nanoce1779_2|574931|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_2:954881..956083+ (Nannochloropsis oceanica)
ATGCTCCGCGCCAAGAAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGC
GGCCGCCAAGATGGACGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAA
AGCATGGAGGCGGGGCACATGACGGCGGGGCCCCAGCTACGGAAGAAGGG
ATGGTGAGCATCTTAGGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAG
CAAGGGTCGACGTCGGCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAG
CGGAAGTGGAGCTAGGCACGGCGGCTACCCTTACGTTTCCCAACCCCAAC
GATCTCACTGATTTCTTGGTGGAGATTATGCCGGAATCAGGCTTCTGGAC
GGGGGCTAGGTTTAAGTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATA
CCCCTCCCAAGGTCATCTGCCAGACGCGTATTTTGCACCCCAACATTGAT
TGGGAGGGAAATGTCTGCTTGAATATTTTGCGGGAGGAATGGAAGCCAAT
CTTAGACGTGAATGCTATTATTTATGGGTTGTTGCACTTGTTTGCAGAGC
CCAATCCGGATGATCCTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCG
GATATCCGACAGTTTGAGCGGATCGTGAAGCAGACGTTGCGGGGGTCCAA
TTATCAGGGACATAGCTTTGAGAGGCTCGTATGA
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Synonyms
Publications