jgi.p|Nanoce1779_2|608283, mRNA_9909 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608283
Unique NamemRNA_9909
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length686
Alignment locationscaffold_41:47431..48628 +

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Properties
Property NameValue
TranscriptId608369
TrackFilteredModels2
ProteinId608283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:47431..48628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608283gene_9909Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608283mRNA_9909-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9909CDS_9909Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9909 ID=mRNA_9909|Name=jgi.p|Nanoce1779_2|608283|organism=Nannochloropsis oceanica|type=mRNA|length=686bp
ACAGCACCCACCCTCTCTTTCAAGAAACATGAAGTTGACTGCCTCCTCCG
TCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGTCCGCTGTCAGCGCC
GACGGCATTTTCCAAACCTATGCCAAGCCCCTGGTGGTGAAGAAGGGCAG
AACCTTGAAAGTTACCCAGAGCTTCGTGATCCAGAACTATGACGACCTCC
GCCGTCTAAGTCCTGTTGCTACGGACCCTGTTCAGGCTGGGCTTTCGACC
GACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCGGATTCCAGTC
CAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCGGACAAGTGGG
CAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTTCCCCAATACG
TGGAAGCCTAAGCTGTCTGCGAACATTACCTCGACCGACGATGGTGACGT
CGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGAACAGGGAGTACA
GGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCCTCTGGTGACACC
ATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGATGGAGACGCGGA
TCTCGAGGTGCTTGTCAGGTAAACAAACGCCTTGGCCTGGCCCCGCTCTC
TAGTGGGAAGTACAGGGTTGAGATGCATCATGTCGC
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protein sequence of jgi.p|Nanoce1779_2|608283

>mRNA_9909-protein ID=mRNA_9909-protein|Name=jgi.p|Nanoce1779_2|608283|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MKLTASSVLLAGVALFSAMSAVSADGIFQTYAKPLVVKKGRTLKVTQSFV
IQNYDDLRRLSPVATDPVQAGLSTDPNFSDWNFDSVFGFQSNSNHTKKNK
TDKADKWADDTGVTIRSAKIFPNTWKPKLSANITSTDDGDVAIFELPQDG
LTLNREYRITYKVRVGRGIPSGDTIPLPFAFNGPNVDGDADLEVLVR*
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mRNA from alignment at scaffold_41:47431..48628+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9909 ID=mRNA_9909|Name=jgi.p|Nanoce1779_2|608283|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_41:47431..48628+ (Nannochloropsis oceanica)
ACAGCACCCACCCTCTCTTTCAAGAAACATGAAGTTGACTGCCTCCTCCG
TCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGGTAAGTTCCGACTCG
ACCATGTATACATGCGCGAATACGAGCGATATCCCAAAAATCGATACCGT
GCTCACGTTCTCTAATGCCATCGTCCTCCTCCATTTCATGCTCAATCCTT
CCTCCCTTGTCTTACAGTCCGCTGTCAGCGCCGACGGCATTTTCCAAACC
TATGCCAAGCCCCTGGTGGTGAAGAAGGGCAGAACCTTGAAAGTTACCCA
GAGCTTCGTGATCCAGAACTATGACGACCTCCGCCGTCTAAGTCCTGTTG
CTACGGACCCTGTTCAGGCTGGGGTACGTTGAAAGAAGAGGGCAGCGGAG
GAGGAGAGACGGAGGGAGGAGAGAACTTGTCCTAGCAGAGTCGCTACCTG
CCTGTTGACATGCTTGCTAATGTATGACCCGACACAAGTCTCTTTCTCGT
CGCCTGAGCTAGTATTTACATTTCTCATACCTTCCTTCGTTTCCTTCCTT
TCCCTCCCACTTTCTGTTTCCATCCACCTACCACACTTACAGCTTTCGAC
CGACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCGGATTCCAGT
CCAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCGGACAAGTGG
GCAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTTCCCCAATAC
GTGGAAGCCTAAGTGAGTAAGACAGGAGGGAAGGGAGGGAGAGGGGGGGA
AGGGAGAAGGAGAGAGGGTGTGGGAGTACGTGTAAATTGAAATCTTTTCT
CGTTTAGCCCTACTTCGAATCTTTATGCCTCCTCCCCTCTCTTTCTCTCC
TCTATTCGACTCGTCCCCAACAGGCTGTCTGCGAACATTACCTCGACCGA
CGATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGA
ACAGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCC
TCTGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGA
TGGAGACGCGGATCTCGAGGTGCTTGTCAGGTAAACAAACGCCTTGGCCT
GGCCCCGCTCTCTAGTGGGAAGTACAGGGTTGAGATGCATCATGTCGC
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Coding sequence (CDS) from alignment at scaffold_41:47431..48628+

>mRNA_9909 ID=mRNA_9909|Name=jgi.p|Nanoce1779_2|608283|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_41:47431..48628+ (Nannochloropsis oceanica)
ATGAAGTTGACTGCCTCCTCCGTCCTCCTGGCCGGCGTCGCCCTCTTTTC
CGCCATGTCCGCTGTCAGCGCCGACGGCATTTTCCAAACCTATGCCAAGC
CCCTGGTGGTGAAGAAGGGCAGAACCTTGAAAGTTACCCAGAGCTTCGTG
ATCCAGAACTATGACGACCTCCGCCGTCTAAGTCCTGTTGCTACGGACCC
TGTTCAGGCTGGGCTTTCGACCGACCCGAATTTTTCTGATTGGAACTTCG
ATAGCGTCTTCGGATTCCAGTCCAATAGTAACCATACGAAGAAAAACAAG
ACAGACAAGGCGGACAAGTGGGCAGATGATACCGGGGTCACCATCAGATC
GGCCAAGATCTTCCCCAATACGTGGAAGCCTAAGCTGTCTGCGAACATTA
CCTCGACCGACGATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGC
CTGACACTGAACAGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAG
GGGCATTCCCTCTGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCC
CCAACGTTGATGGAGACGCGGATCTCGAGGTGCTTGTCAGGTAAATGAAG
TTGACTGCCTCCTCCGTCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCAT
GTCCGCTGTCAGCGCCGACGGCATTTTCCAAACCTATGCCAAGCCCCTGG
TGGTGAAGAAGGGCAGAACCTTGAAAGTTACCCAGAGCTTCGTGATCCAG
AACTATGACGACCTCCGCCGTCTAAGTCCTGTTGCTACGGACCCTGTTCA
GGCTGGGCTTTCGACCGACCCGAATTTTTCTGATTGGAACTTCGATAGCG
TCTTCGGATTCCAGTCCAATAGTAACCATACGAAGAAAAACAAGACAGAC
AAGGCGGACAAGTGGGCAGATGATACCGGGGTCACCATCAGATCGGCCAA
GATCTTCCCCAATACGTGGAAGCCTAAGCTGTCTGCGAACATTACCTCGA
CCGACGATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGCCTGACA
CTGAACAGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAGGGGCAT
TCCCTCTGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCCCCAACG
TTGATGGAGACGCGGATCTCGAGGTGCTTGTCAGGTAAATGAAGTTGACT
GCCTCCTCCGTCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGTCCGC
TGTCAGCGCCGACGGCATTTTCCAAACCTATGCCAAGCCCCTGGTGGTGA
AGAAGGGCAGAACCTTGAAAGTTACCCAGAGCTTCGTGATCCAGAACTAT
GACGACCTCCGCCGTCTAAGTCCTGTTGCTACGGACCCTGTTCAGGCTGG
GCTTTCGACCGACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCG
GATTCCAGTCCAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCG
GACAAGTGGGCAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTT
CCCCAATACGTGGAAGCCTAAGCTGTCTGCGAACATTACCTCGACCGACG
ATGGTGACGTCGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGAAC
AGGGAGTACAGGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCCTC
TGGTGACACCATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGATG
GAGACGCGGATCTCGAGGTGCTTGTCAGGTAAATGAAGTTGACTGCCTCC
TCCGTCCTCCTGGCCGGCGTCGCCCTCTTTTCCGCCATGTCCGCTGTCAG
CGCCGACGGCATTTTCCAAACCTATGCCAAGCCCCTGGTGGTGAAGAAGG
GCAGAACCTTGAAAGTTACCCAGAGCTTCGTGATCCAGAACTATGACGAC
CTCCGCCGTCTAAGTCCTGTTGCTACGGACCCTGTTCAGGCTGGGCTTTC
GACCGACCCGAATTTTTCTGATTGGAACTTCGATAGCGTCTTCGGATTCC
AGTCCAATAGTAACCATACGAAGAAAAACAAGACAGACAAGGCGGACAAG
TGGGCAGATGATACCGGGGTCACCATCAGATCGGCCAAGATCTTCCCCAA
TACGTGGAAGCCTAAGCTGTCTGCGAACATTACCTCGACCGACGATGGTG
ACGTCGCCATTTTCGAGCTCCCGCAGGACGGCCTGACACTGAACAGGGAG
TACAGGATCACCTACAAGGTGCGCGTCGGGAGGGGCATTCCCTCTGGTGA
CACCATTCCACTTCCTTTTGCCTTCAACGGCCCCAACGTTGATGGAGACG
CGGATCTCGAGGTGCTTGTCAGGTAA
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Synonyms
Publications