jgi.p|Nanoce1779_2|569412, mRNA_9907 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569412
Unique NamemRNA_9907
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length327
Alignment locationscaffold_41:46339..46665 -

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Properties
Property NameValue
TranscriptId569498
TrackFilteredModels2
ProteinId569412
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:46339..46665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569412gene_9907Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9907CDS_9907Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569412mRNA_9907-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9907 ID=mRNA_9907|Name=jgi.p|Nanoce1779_2|569412|organism=Nannochloropsis oceanica|type=mRNA|length=327bp
ATGGGCCTCAAACGTTACGCATCTTTGCCGCCACACGCTTGGTACGCACT
TGTTGGCGCCATACTGTGCGTCACAAACACGGCGGCAGGAACTCATCCAG
AGGTAGGAATCGTGGAAGAAGGGGAAGTAGGATCGTTCTGGTTCCACAAA
CACTGTGGAAAAGGAGATCGGGGAAGCCGCCGCTGGCCAGGGAAACATCC
GTTGCATAATCCGCATGGGCCGCCTGCTATTGGATGTCCGTACAACAATG
CCGACCACATACACGATGGACAGATAGAAAGGAACACTAAGCAGCTAGAC
AGAAGTAGTGGAGGACGATGGATCTGA
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protein sequence of jgi.p|Nanoce1779_2|569412

>mRNA_9907-protein ID=mRNA_9907-protein|Name=jgi.p|Nanoce1779_2|569412|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MGLKRYASLPPHAWYALVGAILCVTNTAAGTHPEVGIVEEGEVGSFWFHK
HCGKGDRGSRRWPGKHPLHNPHGPPAIGCPYNNADHIHDGQIERNTKQLD
RSSGGRWI*
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mRNA from alignment at scaffold_41:46339..46665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9907 ID=mRNA_9907|Name=jgi.p|Nanoce1779_2|569412|organism=Nannochloropsis oceanica|type=mRNA|length=327bp|location=Sequence derived from alignment at scaffold_41:46339..46665- (Nannochloropsis oceanica)
ATGGGCCTCAAACGTTACGCATCTTTGCCGCCACACGCTTGGTACGCACT
TGTTGGCGCCATACTGTGCGTCACAAACACGGCGGCAGGAACTCATCCAG
AGGTAGGAATCGTGGAAGAAGGGGAAGTAGGATCGTTCTGGTTCCACAAA
CACTGTGGAAAAGGAGATCGGGGAAGCCGCCGCTGGCCAGGGAAACATCC
GTTGCATAATCCGCATGGGCCGCCTGCTATTGGATGTCCGTACAACAATG
CCGACCACATACACGATGGACAGATAGAAAGGAACACTAAGCAGCTAGAC
AGAAGTAGTGGAGGACGATGGATCTGA
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Coding sequence (CDS) from alignment at scaffold_41:46339..46665-

>mRNA_9907 ID=mRNA_9907|Name=jgi.p|Nanoce1779_2|569412|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_41:46339..46665- (Nannochloropsis oceanica)
ATGGGCCTCAAACGTTACGCATCTTTGCCGCCACACGCTTGGTACGCACT
TGTTGGCGCCATACTGTGCGTCACAAACACGGCGGCAGGAACTCATCCAG
AGGTAGGAATCGTGGAAGAAGGGGAAGTAGGATCGTTCTGGTTCCACAAA
CACTGTGGAAAAGGAGATCGGGGAAGCCGCCGCTGGCCAGGGAAACATCC
GTTGCATAATCCGCATGGGCCGCCTGCTATTGGATGTCCGTACAACAATG
CCGACCACATACACGATGGACAGATAGAAAGGAACACTAAGCAGCTAGAC
AGAAGTAGTGGAGGACGATGGATCTGA
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Synonyms
Publications