jgi.p|Nanoce1779_2|533584, mRNA_9904 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533584
Unique Name	mRNA_9904
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	798
Alignment location	scaffold_41:34743..35540 +

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Properties


Property Name	Value
TranscriptId	533670
Track	FilteredModels2
ProteinId	533584

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:34743..35540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533584	gene_9904	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533584	mRNA_9904-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9904	CDS_9904	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:34743..35540+
coding sequence from alignment at scaffold_41:34743..35540+

mRNA sequence

>mRNA_9904 ID=mRNA_9904|Name=jgi.p|Nanoce1779_2|533584|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGTATCATAAGGGAGTCAGTCAGGGATCTTTGCCGTTGTCCTCATCCTC
GAAAAAGCAAAAGCCCTACCATCCTCACTCCCCGTACTCTGGTCCGCGTT
TAAGCCGGTTGATGCTAGCCGTGTTTGCCAGTCAACGGGCCTCGGTACAC
CGCCTACTACGATTAGGTACAGAGGATATTGAGGCCCACGATGCTCGGGG
ACGAACAGCCTTGTGGTGGGCTTGTCGATGGGGGGAGACAGCAATGGTAC
GCTTGTTGTTGAGGGCAGGTGCGTGTGAGCGATCGAGGGATTACGAAGGG
AGCACTCCACGGGATGCGGCCAAGATGGGACCGGTAGCTCGTGTATGTTT
GGAGCTGTTGAAGGAGGCAGAGCGGGCGAACTTGCTCTGGAAGGTGCGGA
TGTTAAAAGAGAAGGAAAATGAGGCAGGGGATGCAGCAAAGGAGAGAGAG
TGGGTTTCAAGGAGAAAAGAGGGGTATCCGGAGATAGTGAATAAAGATGG
CTATGACTATGACGAGTTTATGTTTGAAGAGAGTCTCTCGTGCGGCTTGT
CGTGGCCCGTGGTGATACTGCGGACGGTGCCCTCTCCCCGCGGCTGCTGG
TGGATTCCCGGAGGGCCAGGGAGCAGCAGAAGCAGCAGTGAGTTTGGCAG
GATTAAGAGGATAAAGATGAAAAAAGTGCCACGAGACGTGCGGGCGGCAG
TCATGGAGCACGTGGTGGGATGCGGGAGTGGTAGTAGCGGAGGAGCGAAG
GGCTTGGCTGATGATATTTTTATCGAGCTACGACAGATGCTTTTGTAG

protein sequence of jgi.p|Nanoce1779_2|533584

>mRNA_9904-protein ID=mRNA_9904-protein|Name=jgi.p|Nanoce1779_2|533584|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MYHKGVSQGSLPLSSSSKKQKPYHPHSPYSGPRLSRLMLAVFASQRASVH
RLLRLGTEDIEAHDARGRTALWWACRWGETAMVRLLLRAGACERSRDYEG
STPRDAAKMGPVARVCLELLKEAERANLLWKVRMLKEKENEAGDAAKERE
WVSRRKEGYPEIVNKDGYDYDEFMFEESLSCGLSWPVVILRTVPSPRGCW
WIPGGPGSSRSSSEFGRIKRIKMKKVPRDVRAAVMEHVVGCGSGSSGGAK
GLADDIFIELRQMLL*

mRNA from alignment at scaffold_41:34743..35540+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9904 ID=mRNA_9904|Name=jgi.p|Nanoce1779_2|533584|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at scaffold_41:34743..35540+ (Nannochloropsis oceanica)
ATGTATCATAAGGGAGTCAGTCAGGGATCTTTGCCGTTGTCCTCATCCTC
GAAAAAGCAAAAGCCCTACCATCCTCACTCCCCGTACTCTGGTCCGCGTT
TAAGCCGGTTGATGCTAGCCGTGTTTGCCAGTCAACGGGCCTCGGTACAC
CGCCTACTACGATTAGGTACAGAGGATATTGAGGCCCACGATGCTCGGGG
ACGAACAGCCTTGTGGTGGGCTTGTCGATGGGGGGAGACAGCAATGGTAC
GCTTGTTGTTGAGGGCAGGTGCGTGTGAGCGATCGAGGGATTACGAAGGG
AGCACTCCACGGGATGCGGCCAAGATGGGACCGGTAGCTCGTGTATGTTT
GGAGCTGTTGAAGGAGGCAGAGCGGGCGAACTTGCTCTGGAAGGTGCGGA
TGTTAAAAGAGAAGGAAAATGAGGCAGGGGATGCAGCAAAGGAGAGAGAG
TGGGTTTCAAGGAGAAAAGAGGGGTATCCGGAGATAGTGAATAAAGATGG
CTATGACTATGACGAGTTTATGTTTGAAGAGAGTCTCTCGTGCGGCTTGT
CGTGGCCCGTGGTGATACTGCGGACGGTGCCCTCTCCCCGCGGCTGCTGG
TGGATTCCCGGAGGGCCAGGGAGCAGCAGAAGCAGCAGTGAGTTTGGCAG
GATTAAGAGGATAAAGATGAAAAAAGTGCCACGAGACGTGCGGGCGGCAG
TCATGGAGCACGTGGTGGGATGCGGGAGTGGTAGTAGCGGAGGAGCGAAG
GGCTTGGCTGATGATATTTTTATCGAGCTACGACAGATGCTTTTGTAG

Coding sequence (CDS) from alignment at scaffold_41:34743..35540+

>mRNA_9904 ID=mRNA_9904|Name=jgi.p|Nanoce1779_2|533584|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_41:34743..35540+ (Nannochloropsis oceanica)
ATGTATCATAAGGGAGTCAGTCAGGGATCTTTGCCGTTGTCCTCATCCTC
GAAAAAGCAAAAGCCCTACCATCCTCACTCCCCGTACTCTGGTCCGCGTT
TAAGCCGGTTGATGCTAGCCGTGTTTGCCAGTCAACGGGCCTCGGTACAC
CGCCTACTACGATTAGGTACAGAGGATATTGAGGCCCACGATGCTCGGGG
ACGAACAGCCTTGTGGTGGGCTTGTCGATGGGGGGAGACAGCAATGGTAC
GCTTGTTGTTGAGGGCAGGTGCGTGTGAGCGATCGAGGGATTACGAAGGG
AGCACTCCACGGGATGCGGCCAAGATGGGACCGGTAGCTCGTGTATGTTT
GGAGCTGTTGAAGGAGGCAGAGCGGGCGAACTTGCTCTGGAAGGTGCGGA
TGTTAAAAGAGAAGGAAAATGAGGCAGGGGATGCAGCAAAGGAGAGAGAG
TGGGTTTCAAGGAGAAAAGAGGGGTATCCGGAGATAGTGAATAAAGATGG
CTATGACTATGACGAGTTTATGTTTGAAGAGAGTCTCTCGTGCGGCTTGT
CGTGGCCCGTGGTGATACTGCGGACGGTGCCCTCTCCCCGCGGCTGCTGG
TGGATTCCCGGAGGGCCAGGGAGCAGCAGAAGCAGCAGTGAGTTTGGCAG
GATTAAGAGGATAAAGATGAAAAAAGTGCCACGAGACGTGCGGGCGGCAG
TCATGGAGCACGTGGTGGGATGCGGGAGTGGTAGTAGCGGAGGAGCGAAG
GGCTTGGCTGATGATATTTTTATCGAGCTACGACAGATGCTTTTGTAG

Synonyms

Publications