jgi.p|Nanoce1779_2|303858, mRNA_9902 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|303858
Unique Name	mRNA_9902
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1167
Alignment location	scaffold_41:28631..30242 +

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Properties


Property Name	Value
TranscriptId	303944
Track	FilteredModels2
ProteinId	303858

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:28631..30242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|303858	gene_9902	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|303858	mRNA_9902-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9902	CDS_9902	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:28631..30242+
coding sequence from alignment at scaffold_41:28631..30242+

mRNA sequence

>mRNA_9902 ID=mRNA_9902|Name=jgi.p|Nanoce1779_2|303858|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
CGGTACGGGGCAATTGAAGGAAACATTATTGCCTTCGTCAGAATGTGAGC
ACCAAGAAGTCTAGCGTTATGTCCCCATGTGTAATGTGGTTTGTGGGATG
GGGTGGGCTTGAGTGTGTGCTGTATGTGTGGACATAGTTATGGCTGCAAG
TAAGGTTCCAGTGGTTCAAGTTATTCATTTGTTTGTAAGATCGATATGGC
CATATGGGTGATGGAGTCTTCATGGGACAGCTCAGCCTAACGCCCATTCC
ATCGCTCCACGACACCCAAACACACAGGTACCATGCCCTCCACCCCCTTG
CCGTCATCAAGCTCGTCCTGGCTGGGCCAGAGGTCGTCGTCGTTCTTGAT
GAACGCCGCATGCTGCCTCTTCCTCGCTCTCTTGCTCTTCCCTGACGCCA
CTCAAGGCTTTTACCTCTTCCCTCTTCGCAGCAGCACCGGTAGCAGTACC
ACCAGCAAAACCTGCCGCCAGGCCACGGCTGCCTCCAATGTTCCTCCCCT
CCCCCGTAACTTTACGGTAGGGGCTGCTTCCCTTCCTCCCACTCCTTCCA
CATTCGAGGTGCCCTCTTTCGTCCCTCCTCCTGCCGCGGCCTCTGCGTAT
GAGCAAGCAAAACAAGCTCCGGGCCCTCGGCGGTGGCCCATAGTGGGAAA
CACGCTTAAACTCCTTCGCTTGGGTGGAGCCGATGAATTCGACAGGCTGA
TGTATGACACCTACGGTCCCATGGTCAAGACTCACATTCTAGGTGTTCCT
TGGTTCGTCATTAGCGACCCGCTGCTGGCACGTGAAGTCCTGGTGACTCG
CTCCGGTACCGACTTCAAGGATCGATGGGTCGCCAAGCCCCTTGCCCGCC
TCTTCGGCAATTATGGCATCATCTTTGCCAATGCGGAGGAGCACCAGTCA
AATCGTCGCATCAGCATGCCTGCCTTCCATCGCCCGGAGATTCTCGAGCA
CAGCGCAGTGGTCGTCCAGGGCCTGGCCAAGTAGGGAGAGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGTTAGGCGTTCTTCTTGTTCTTCTTTC
TTCTTCATCATCAGCTTTGTGGTAGTTTCTACTAAAATCCTCCAAAATCC
TCCTTCCCTCCTTTCGTCCCTACCTCCCTCCCTCCCTCATCAACAGGCAA
CTCGTCGCGCGCTACGC

protein sequence of jgi.p|Nanoce1779_2|303858

>mRNA_9902-protein ID=mRNA_9902-protein|Name=jgi.p|Nanoce1779_2|303858|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPSTPLPSSSSSWLGQRSSSFLMNAACCLFLALLLFPDATQGFYLFPLRS
STGSSTTSKTCRQATAASNVPPLPRNFTVGAASLPPTPSTFEVPSFVPPP
AAASAYEQAKQAPGPRRWPIVGNTLKLLRLGGADEFDRLMYDTYGPMVKT
HILGVPWFVISDPLLAREVLVTRSGTDFKDRWVAKPLARLFGNYGIIFAN
AEEHQSNRRISMPAFHRPEILEHSAVVVQGLAK*

mRNA from alignment at scaffold_41:28631..30242+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9902 ID=mRNA_9902|Name=jgi.p|Nanoce1779_2|303858|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at scaffold_41:28631..30242+ (Nannochloropsis oceanica)
CGGTACGGGGCAATTGAAGGAAACATTATTGCCTTCGTCAGAATGTGAGC
ACCAAGAAGTCTAGCGTTATGTCCCCATGTGTAATGTGGTTTGTGGGATG
GGGTGGGCTTGAGTGTGTGCTGTATGTGTGGACATAGTTATGGCTGCAAG
TAAGGTTCCAGTGGTTCAAGTTATTCATTTGTTTGTAAGATCGATATGGC
CATATGGGTGATGGAGTCTTCATGGGACAGCTCAGCCTAACGCCCATTCC
ATCGCTCCACGACACCCAAACACACAGGTACCATGCCCTCCACCCCCTTG
CCGTCATCAAGCTCGTCCTGGCTGGGCCAGAGGTCGTCGTCGTTCTTGAT
GAACGCCGCATGCTGCCTCTTCCTCGCTCTCTTGCTCTTCCCTGACGCCA
CTCAAGGCTTTTACCTCTTCCCTCTTCGCAGCAGCACCGGTAGCAGTACC
ACCAGCAAAACCTGCCGCCAGGCCACGGCTGCCTCCAATGTTCCTCCCCT
CCCCCGTAACTTTACGGTAGGGGCTGCTTCCCTTCCTCCCACTCCTTCCA
CATTCGAGGTGCCCTCTTTCGTCCCTCCTCCTGCCGCGGCCTCTGCGTAT
GAGCAAGCAAAACAAGCTCCGGGCCCTCGGCGGTGGCCCATAGTGGGAAA
CACGCTTAAACTCCTTCGCTTGGGTGGAGCCGATGAATTCGACAGGCTGA
TGTATGGTACGTCCTCCCTCCCTCCCTCCTTCTCTCCCTCCCTCCCTTGC
TCCTTCCCTGTCTTCACGCTTACCTTTCATAACCCCCTCTCCTCCCTCCA
TTTTATCCTTCTTTCAGACACCTACGGTCCCATGGTCAAGACTCACATTC
TAGGTGTTCCTTGGTTCGTCATTAGCGACCCGCTGCTGGCACGTGAAGGT
ATTTAGGCCCCGCCCGCCCTTCCTCCCTCCCTCCCTCCTCAGTGGGTCAA
GCTCGTCGAGCCCATCATTTTTCCTTTTGCCTCCCTGTCCTTCGACTCAC
ACCCCTTCCTCCCTCCCCCCCCTCGCTAGTCCTGGTGACTCGCTCCGGTA
CCGACTTCAAGGATCGATGGGTCGCCAAGCCCCTTGCCCGCCTCTTCGGC
AATTATGGCATCATCTTTGCCAATGCGGAGGAGCACCAGGTCCGCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACTTCTAGTTTAATCGTC
CCTTCCTTTCTCCTGCTTTTTGAACTTCCTCCCTTTTGGCCTCCTGTTCT
CATTTCCCTTCCCTACCCCTCCCTTCCCATCCCATCCCATCTCCCTTCCA
CTTTCCCTCCCTCCCTCGTTTCCTTCCTCCCTCCCCATCAAGTCAAATCG
TCGCATCAGCATGCCTGCCTTCCATCGCCCGGAGATTCTCGAGCACAGCG
CAGTGGTCGTCCAGGGCCTGGCCAAGTAGGGAGAGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGTTAGGCGTTCTTCTTGTTCTTCTTTCTTCTT
CATCATCAGCTTTGTGGTAGTTTCTACTAAAATCCTCCAAAATCCTCCTT
CCCTCCTTTCGTCCCTACCTCCCTCCCTCCCTCATCAACAGGCAACTCGT
CGCGCGCTACGC

Coding sequence (CDS) from alignment at scaffold_41:28631..30242+

>mRNA_9902 ID=mRNA_9902|Name=jgi.p|Nanoce1779_2|303858|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_41:28631..30242+ (Nannochloropsis oceanica)
ATGCCCTCCACCCCCTTGCCGTCATCAAGCTCGTCCTGGCTGGGCCAGAG
GTCGTCGTCGTTCTTGATGAACGCCGCATGCTGCCTCTTCCTCGCTCTCT
TGCTCTTCCCTGACGCCACTCAAGGCTTTTACCTCTTCCCTCTTCGCAGC
AGCACCGGTAGCAGTACCACCAGCAAAACCTGCCGCCAGGCCACGGCTGC
CTCCAATGTTCCTCCCCTCCCCCGTAACTTTACGGTAGGGGCTGCTTCCC
TTCCTCCCACTCCTTCCACATTCGAGGTGCCCTCTTTCGTCCCTCCTCCT
GCCGCGGCCTCTGCGTATGAGCAAGCAAAACAAGCTCCGGGCCCTCGGCG
GTGGCCCATAGTGGGAAACACGCTTAAACTCCTTCGCTTGGGTGGAGCCG
ATGAATTCGACAGGCTGATGTATGACACCTACGGTCCCATGGTCAAGACT
CACATTCTAGGTGTTCCTTGGTTCGTCATTAGCGACCCGCTGCTGGCACG
TGAAGTCCTGGTGACTCGCTCCGGTACCGACTTCAAGGATCGATGGGTCG
CCAAGCCCCTTGCCCGCCTCTTCGGCAATTATGGCATCATCTTTGCCAAT
GCGGAGGAGCACCAGTCAAATCGTCGCATCAGCATGCCTGCCTTCCATCG
CCCGGAGATTCTCGAGCACAGCGCAGTGGTCGTCCAGGGCCTGGCCAAGT
AGATGCCCTCCACCCCCTTGCCGTCATCAAGCTCGTCCTGGCTGGGCCAG
AGGTCGTCGTCGTTCTTGATGAACGCCGCATGCTGCCTCTTCCTCGCTCT
CTTGCTCTTCCCTGACGCCACTCAAGGCTTTTACCTCTTCCCTCTTCGCA
GCAGCACCGGTAGCAGTACCACCAGCAAAACCTGCCGCCAGGCCACGGCT
GCCTCCAATGTTCCTCCCCTCCCCCGTAACTTTACGGTAGGGGCTGCTTC
CCTTCCTCCCACTCCTTCCACATTCGAGGTGCCCTCTTTCGTCCCTCCTC
CTGCCGCGGCCTCTGCGTATGAGCAAGCAAAACAAGCTCCGGGCCCTCGG
CGGTGGCCCATAGTGGGAAACACGCTTAAACTCCTTCGCTTGGGTGGAGC
CGATGAATTCGACAGGCTGATGTATGACACCTACGGTCCCATGGTCAAGA
CTCACATTCTAGGTGTTCCTTGGTTCGTCATTAGCGACCCGCTGCTGGCA
CGTGAAGTCCTGGTGACTCGCTCCGGTACCGACTTCAAGGATCGATGGGT
CGCCAAGCCCCTTGCCCGCCTCTTCGGCAATTATGGCATCATCTTTGCCA
ATGCGGAGGAGCACCAGTCAAATCGTCGCATCAGCATGCCTGCCTTCCAT
CGCCCGGAGATTCTCGAGCACAGCGCAGTGGTCGTCCAGGGCCTGGCCAA
GTAGATGCCCTCCACCCCCTTGCCGTCATCAAGCTCGTCCTGGCTGGGCC
AGAGGTCGTCGTCGTTCTTGATGAACGCCGCATGCTGCCTCTTCCTCGCT
CTCTTGCTCTTCCCTGACGCCACTCAAGGCTTTTACCTCTTCCCTCTTCG
CAGCAGCACCGGTAGCAGTACCACCAGCAAAACCTGCCGCCAGGCCACGG
CTGCCTCCAATGTTCCTCCCCTCCCCCGTAACTTTACGGTAGGGGCTGCT
TCCCTTCCTCCCACTCCTTCCACATTCGAGGTGCCCTCTTTCGTCCCTCC
TCCTGCCGCGGCCTCTGCGTATGAGCAAGCAAAACAAGCTCCGGGCCCTC
GGCGGTGGCCCATAGTGGGAAACACGCTTAAACTCCTTCGCTTGGGTGGA
GCCGATGAATTCGACAGGCTGATGTATGACACCTACGGTCCCATGGTCAA
GACTCACATTCTAGGTGTTCCTTGGTTCGTCATTAGCGACCCGCTGCTGG
CACGTGAAGTCCTGGTGACTCGCTCCGGTACCGACTTCAAGGATCGATGG
GTCGCCAAGCCCCTTGCCCGCCTCTTCGGCAATTATGGCATCATCTTTGC
CAATGCGGAGGAGCACCAGTCAAATCGTCGCATCAGCATGCCTGCCTTCC
ATCGCCCGGAGATTCTCGAGCACAGCGCAGTGGTCGTCCAGGGCCTGGCC
AAGTAGATGCCCTCCACCCCCTTGCCGTCATCAAGCTCGTCCTGGCTGGG
CCAGAGGTCGTCGTCGTTCTTGATGAACGCCGCATGCTGCCTCTTCCTCG
CTCTCTTGCTCTTCCCTGACGCCACTCAAGGCTTTTACCTCTTCCCTCTT
CGCAGCAGCACCGGTAGCAGTACCACCAGCAAAACCTGCCGCCAGGCCAC
GGCTGCCTCCAATGTTCCTCCCCTCCCCCGTAACTTTACGGTAGGGGCTG
CTTCCCTTCCTCCCACTCCTTCCACATTCGAGGTGCCCTCTTTCGTCCCT
CCTCCTGCCGCGGCCTCTGCGTATGAGCAAGCAAAACAAGCTCCGGGCCC
TCGGCGGTGGCCCATAGTGGGAAACACGCTTAAACTCCTTCGCTTGGGTG
GAGCCGATGAATTCGACAGGCTGATGTATGACACCTACGGTCCCATGGTC
AAGACTCACATTCTAGGTGTTCCTTGGTTCGTCATTAGCGACCCGCTGCT
GGCACGTGAAGTCCTGGTGACTCGCTCCGGTACCGACTTCAAGGATCGAT
GGGTCGCCAAGCCCCTTGCCCGCCTCTTCGGCAATTATGGCATCATCTTT
GCCAATGCGGAGGAGCACCAGTCAAATCGTCGCATCAGCATGCCTGCCTT
CCATCGCCCGGAGATTCTCGAGCACAGCGCAGTGGTCGTCCAGGGCCTGG
CCAAGTAG

Synonyms

Publications