jgi.p|Nanoce1779_2|608233, mRNA_9900 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608233
Unique Name	mRNA_9900
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1154
Alignment location	scaffold_41:14427..16390 +

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Properties


Property Name	Value
TranscriptId	608319
Track	FilteredModels2
ProteinId	608233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:14427..16390 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608233	gene_9900	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608233	mRNA_9900-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9900	CDS_9900	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:14427..16390+
coding sequence from alignment at scaffold_41:14427..16390+

mRNA sequence

>mRNA_9900 ID=mRNA_9900|Name=jgi.p|Nanoce1779_2|608233|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTATTCCCTCCCCGCCTCCCT
CTGCGCTGGCCTCTGCCTTCTACCACGCTTGCGGCAAGGGCGAGACAGAG
CTCGTGGCCTCCTTCCTTCGCAGAGCACCGGCTCTCGCAATGGCGAGAGA
CCACCACACTTTCGACATGACAGGCCTCATGCTCGCGTGTGAGGGAGGGC
ACGTCTCCATCGTCAGTCTCCTCCTCGAGGCCAGAGCGCCAGTGGCGGCT
GTCGACGGAAACGGCAGCACCGCGCTGCTCCTGGCTTGTCTAGGGGGTCA
CTTGGAGGTCATACAACTCCTTGTGGAGGTGGCTGACGCTGACATTGAAT
GCGCGGACAACGACGGCGACACGCCCTTGATGCTGGCAGCTTCGTGGGGT
TTCGCAGACTGCGTCTCCTTCCTTCTCAGCAAGGGCGCCTCTCCTCACGC
GAAAAGCAAGGGAGGGAAAACTGCTCTGCATTGGGCTGCAAGGCACGGGG
AGAAGGGGGTCTGCGAGGTCCTCCTCGCCAATGGCGCCGACCCGTGCTCG
GTCGACAAGGGGGGACGGACCGCTCTCTGCACGGCCCGCGTCTTCCGCCA
CAACCAATGCGCTCGCCTCCTGGCCGAAGCGGAGATGCGGCAGGTCTGAG
ACAGAGAGTTATTTCCTATACCACTTGTTTCCCTCCTTCCCTCCCTCTCA
TCCTCACCCTTCCCTACCTTCACGATGGGCACGGCCACAACCAAGAAAGT
GCGCGAGAAAATAAGAGAGAAAGGAAGAAAGGAAAAAACAAAGGATGTAA
GGCAGGAAGGGGAAAAGTGCAGCACGGCCACGAGAAAACACAGAGAAAGA
TACTCATGGCCTGATGAGGACCTCGACACAGCAGGCCGCTGTCAAGATAG
AAGGGAGGAAGGAGGGAGGGAGGGACTGTTTAAATGTGAGTACGTAGTTA
AGAAAAGGCTACCGCTGTAATTTTATGGGGTAAGGCGGAGGAGGGAGAGA
AGGAGGGAGGAAAGGAATGAGAAGAGATCCCCGTGTGGATATGTACAAAC
AACGCATGATTCTGTGAAGGGGGAGGAAGGGAGGGAAGGAGGGGCAGGGA
GGGAAGGAGGGGCTAGCTTAAGAAAGGAAGCATAAAGAAGCAACAAGTCA
TCAC

protein sequence of jgi.p|Nanoce1779_2|608233

>mRNA_9900-protein ID=mRNA_9900-protein|Name=jgi.p|Nanoce1779_2|608233|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MARDHHTFDMTGLMLACEGGHVSIVSLLLEARAPVAAVDGNGSTALLLAC
LGGHLEVIQLLVEVADADIECADNDGDTPLMLAASWGFADCVSFLLSKGA
SPHAKSKGGKTALHWAARHGEKGVCEVLLANGADPCSVDKGGRTALCTAR
VFRHNQCARLLAEAEMRQV*

mRNA from alignment at scaffold_41:14427..16390+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9900 ID=mRNA_9900|Name=jgi.p|Nanoce1779_2|608233|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_41:14427..16390+ (Nannochloropsis oceanica)
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTATTCCCTCCCCGCCTCCCT
CTGCGCTGGCCTCTGCCTTCTACCACGCTTGCGGCAAGGGCGAGACAGAG
CTCGTGGCCTCCTTCCTTCGCAGAGCACCGGCTCTCGCAATGGTACGTCC
CCTCCCTCCCTCCCTCCCTCCGTCATTCTGATCTCAACTTGGACTAGCCG
GTCTTTCTGACGCGCGCCTTCCCCCTCGTCCAGCAGCCCTTCTCACCTCC
ACCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCTCCCCAGGC
GAGAGACCACCACACTTTCGACATGACAGGCCTCATGCTCGCGTGTGAGG
GAGGGCACGTCTCCATCGTCAGTCTCCTCCTCGAGGCCAGAGCGCCAGTG
GCGGCTGTCGACGGAAACGGCAGCACCGCGCTGCTCCTGGCTTGTCTAGG
GGGTCACTTGGAGGTGGGTGCTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCATTCGTTTTCACT
CTTTGGGCTCGAGCGGCTTCCGCCCATCAGCCCCTTCCTCCTTCCTGTCC
CCCTCCTTTCCCTCCAAGAGTCACCGAGCTTCCTCGGGAAAAAAGACCAG
CAGGACGCCATAAACACCGATCCACTCACCCCTCCCTGCCTCCCTCCTTA
GGTCATACAACTCCTTGTGGAGGTGGCTGACGCTGACATTGAATGCGCGG
ACAACGACGGCGACACGCCCTTGATGGTAAAGACGGAGGGAGGGAGGGAG
GAGGGAGGGAGGGAGGGAAGGAAGAAGGGGAGACGCGGCTATGAAGCTGG
AATGCAAGTACTGTTCGCGGGAATCCCTCCCTCTCTTGCATCCATCTCTC
TCTCTCCCTCTCAGGTGGCTGCTTCAATTTATGTCTTCCACATCAAGTGA
ATGCCCTATTCCTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTTCTCCCCCGTCTTGTGCAGCTGGCAGCTTCGTGGGGTTTCGCAGACTG
CGTCTCCTTCCTTCTCAGCAAGGGCGCCTCTCCTCACGCGAAAAGCAAGG
GAGGGAAAACTGCTCTGCATTGGGCTGCAAGGCACGGGGAGAAGGGGGTC
TGCGAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAACAAACGCA
GCCAAGGGAGAGAAAGAAAGAAAATGGGGGTAGTGACACGCACCCAGCCT
TCCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCC
TCCTTCCCTCCCTGCCTGCGTGTCCAGGTCCTCCTCGCCAATGGCGCCGA
CCCGTGCTCGGTCGACAAGGGGGGACGGACCGCTCTCTGCACGGCCCGCG
TCTTCCGCCACAACCAATGCGCTCGCCTCCTGGCCGAAGCGGAGATGCGG
CAGGTCTGAGACAGAGAGTTATTTCCTATACCACTTGTTTCCCTCCTTCC
CTCCCTCTCATCCTCACCCTTCCCTACCTTCACGATGGGCACGGCCACAA
CCAAGAAAGTGCGCGAGAAAATAAGAGAGAAAGGAAGAAAGGAAAAAACA
AAGGATGTAAGGCAGGAAGGGGAAAAGTGCAGCACGGCCACGAGAAAACA
CAGAGAAAGATACTCATGGCCTGATGAGGACCTCGACACAGCAGGCCGCT
GTCAAGATAGAAGGGAGGAAGGAGGGAGGGAGGGACTGTTTAAATGTGAG
TACGTAGTTAAGAAAAGGCTACCGCTGTAATTTTATGGGGTAAGGCGGAG
GAGGGAGAGAAGGAGGGAGGAAAGGAATGAGAAGAGATCCCCGTGTGGAT
ATGTACAAACAACGCATGATTCTGTGAAGGGGGAGGAAGGGAGGGAAGGA
GGGGCAGGGAGGGAAGGAGGGGCTAGCTTAAGAAAGGAAGCATAAAGAAG
CAACAAGTCATCAC

Coding sequence (CDS) from alignment at scaffold_41:14427..16390+

>mRNA_9900 ID=mRNA_9900|Name=jgi.p|Nanoce1779_2|608233|organism=Nannochloropsis oceanica|type=CDS|length=2550bp|location=Sequence derived from alignment at scaffold_41:14427..16390+ (Nannochloropsis oceanica)
ATGGCGAGAGACCACCACACTTTCGACATGACAGGCCTCATGCTCGCGTG
TGAGGGAGGGCACGTCTCCATCGTCAGTCTCCTCCTCGAGGCCAGAGCGC
CAGTGGCGGCTGTCGACGGAAACGGCAGCACCGCGCTGCTCCTGGCTTGT
CTAGGGGGTCACTTGGAGGTCATACAACTCCTTGTGGAGGTGGCTGACGC
TGACATTGAATGCGCGGACAACGACGGCGACACGCCCTTGATGCTGGCAG
CTTCGTGGGGTTTCGCAGACTGCGTCTCCTTCCTTCTCAGCAAGGGCGCC
TCTCCTCACGCGAAAAGCAAGGGAGGGAAAACTGCTCTGCATTGGGCTGC
AAGGCACGGGGAGAAGGGGGTCTGCGAGGTCCTCCTCGCCAATGGCGCCG
ACCCGTGCTCGGTCGACAAGGGGGGACGGACCGCTCTCTGCACGGCCCGC
GTCTTCCGCCACAACCAATGCGCTCGCCTCCTGGCCGAAGCGGAGATGCG
GCAGGTCTGAATGGCGAGAGACCACCACACTTTCGACATGACAGGCCTCA
TGCTCGCGTGTGAGGGAGGGCACGTCTCCATCGTCAGTCTCCTCCTCGAG
GCCAGAGCGCCAGTGGCGGCTGTCGACGGAAACGGCAGCACCGCGCTGCT
CCTGGCTTGTCTAGGGGGTCACTTGGAGGTCATACAACTCCTTGTGGAGG
TGGCTGACGCTGACATTGAATGCGCGGACAACGACGGCGACACGCCCTTG
ATGCTGGCAGCTTCGTGGGGTTTCGCAGACTGCGTCTCCTTCCTTCTCAG
CAAGGGCGCCTCTCCTCACGCGAAAAGCAAGGGAGGGAAAACTGCTCTGC
ATTGGGCTGCAAGGCACGGGGAGAAGGGGGTCTGCGAGGTCCTCCTCGCC
AATGGCGCCGACCCGTGCTCGGTCGACAAGGGGGGACGGACCGCTCTCTG
CACGGCCCGCGTCTTCCGCCACAACCAATGCGCTCGCCTCCTGGCCGAAG
CGGAGATGCGGCAGGTCTGAATGGCGAGAGACCACCACACTTTCGACATG
ACAGGCCTCATGCTCGCGTGTGAGGGAGGGCACGTCTCCATCGTCAGTCT
CCTCCTCGAGGCCAGAGCGCCAGTGGCGGCTGTCGACGGAAACGGCAGCA
CCGCGCTGCTCCTGGCTTGTCTAGGGGGTCACTTGGAGGTCATACAACTC
CTTGTGGAGGTGGCTGACGCTGACATTGAATGCGCGGACAACGACGGCGA
CACGCCCTTGATGCTGGCAGCTTCGTGGGGTTTCGCAGACTGCGTCTCCT
TCCTTCTCAGCAAGGGCGCCTCTCCTCACGCGAAAAGCAAGGGAGGGAAA
ACTGCTCTGCATTGGGCTGCAAGGCACGGGGAGAAGGGGGTCTGCGAGGT
CCTCCTCGCCAATGGCGCCGACCCGTGCTCGGTCGACAAGGGGGGACGGA
CCGCTCTCTGCACGGCCCGCGTCTTCCGCCACAACCAATGCGCTCGCCTC
CTGGCCGAAGCGGAGATGCGGCAGGTCTGAATGGCGAGAGACCACCACAC
TTTCGACATGACAGGCCTCATGCTCGCGTGTGAGGGAGGGCACGTCTCCA
TCGTCAGTCTCCTCCTCGAGGCCAGAGCGCCAGTGGCGGCTGTCGACGGA
AACGGCAGCACCGCGCTGCTCCTGGCTTGTCTAGGGGGTCACTTGGAGGT
CATACAACTCCTTGTGGAGGTGGCTGACGCTGACATTGAATGCGCGGACA
ACGACGGCGACACGCCCTTGATGCTGGCAGCTTCGTGGGGTTTCGCAGAC
TGCGTCTCCTTCCTTCTCAGCAAGGGCGCCTCTCCTCACGCGAAAAGCAA
GGGAGGGAAAACTGCTCTGCATTGGGCTGCAAGGCACGGGGAGAAGGGGG
TCTGCGAGGTCCTCCTCGCCAATGGCGCCGACCCGTGCTCGGTCGACAAG
GGGGGACGGACCGCTCTCTGCACGGCCCGCGTCTTCCGCCACAACCAATG
CGCTCGCCTCCTGGCCGAAGCGGAGATGCGGCAGGTCTGAATGGCGAGAG
ACCACCACACTTTCGACATGACAGGCCTCATGCTCGCGTGTGAGGGAGGG
CACGTCTCCATCGTCAGTCTCCTCCTCGAGGCCAGAGCGCCAGTGGCGGC
TGTCGACGGAAACGGCAGCACCGCGCTGCTCCTGGCTTGTCTAGGGGGTC
ACTTGGAGGTCATACAACTCCTTGTGGAGGTGGCTGACGCTGACATTGAA
TGCGCGGACAACGACGGCGACACGCCCTTGATGCTGGCAGCTTCGTGGGG
TTTCGCAGACTGCGTCTCCTTCCTTCTCAGCAAGGGCGCCTCTCCTCACG
CGAAAAGCAAGGGAGGGAAAACTGCTCTGCATTGGGCTGCAAGGCACGGG
GAGAAGGGGGTCTGCGAGGTCCTCCTCGCCAATGGCGCCGACCCGTGCTC
GGTCGACAAGGGGGGACGGACCGCTCTCTGCACGGCCCGCGTCTTCCGCC
ACAACCAATGCGCTCGCCTCCTGGCCGAAGCGGAGATGCGGCAGGTCTGA

Synonyms

Publications