jgi.p|Nanoce1779_2|148267, mRNA_990 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|148267
Unique Name	mRNA_990
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1366
Alignment location	scaffold_2:952165..953978 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	148353
Track	FilteredModels2
ProteinId	148267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:952165..953978 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|148267	gene_990	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|148267	mRNA_990-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_990	CDS_990	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:952165..953978+
coding sequence from alignment at scaffold_2:952165..953978+

mRNA sequence

>mRNA_990 ID=mRNA_990|Name=jgi.p|Nanoce1779_2|148267|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
ATAGCCCCACACGTATCAAAACTAAATCGTTCATAAGCATCCACACTTCA
ACTGTTGAGGGAATTAGTCATACCAAGTAAAAACGCAGTGGCGTGCCGTT
GCCGTTAGCGTGGTTGAGTGCAATGCACCGATATCCACTTGCTTGTGCTT
GTCTGTCCCTCCCCTCTGTTTGGTGACCTTAACCACAACTTGCGCCTGCA
GCTTGTCCGTATATCCCCTGTTTCCTACGGTCACATTGACTTGTTGGTGG
GGTTGGCTGAAAGGGAAACATTTGGCTCCTTGCTCGACAACACTCCTTCG
TCATCATTAACCGCCCCACACAACACAGAGAGCAAGCCATGCTGCGCGGG
TTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCTTCGGACAGCAGA
AACGCTGGGTGGTCTGCGCACCATGCGACAAGGCCGACGGGGCGAGAACC
GGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACGCCGCGAGGGCAGTTT
GGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGGTTCTGGCTCCTATGA
GCGGTTCATCAAGGCACACAAGGAGACAGTGCTGACCGAGGAGGACAAGC
GCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTGGAGGACTTCAAAGAC
GATGGACAAGAAGATTTGACCGCAGCTGAAGAAGGATACCTAGGTACGGT
GATGGAAAGCGAAGGCTTTGGCGACAACGAGAATAATGGAGATAAGGCCC
AGGGCCGCAAAGGACGAGCCGGAGGAGGCCGTGGTGATGACGCGGGAGGG
GATGACTCGGGGAGTTACTTCGATTGGAACGAAGAATCTTTGTTCATCCC
CAACTTGCCAGAAAGGAATGAGGAGGAGGGAGGTTTTACCACGGATAAGA
TCACGGGAAAGGATGACGTGCAATTGAGGGTGAACAAGTTGTTGTGGCGA
CGGTTGAAGCTCAAGGCGAGGGATATGGATCTGCATGTCCCCTCGGCCTT
TCGGAGGGTTAAAATTGTGCAGAAGGCCATGGCCGAAGCAAGGGAAAAGA
TGGCACGAGATCCGAGGAAGGAGGAAAGGACGATGAGCGTGGAGAAGAAG
GAGGGGAAGGCGGTCGTGACGTCTTTACGAGAAGACAAGGAGAAGGAAGT
GCAGGAGGGGCTAGAAAAAAAGCGGCCAAGGCAAGGAGTGTGAGTAAAGG
GGAGTGGGATGGGGACGAGGAAATGGGGGAGGAGGAATGGGACGATGATG
AGGAGGAAGATGATGATGAGGAGGAAACGGCGGGGATGGACGATTGGTCC
AAGATTCATATGCAGGACTTGGAGGAGGCCTTGGGTGAGGAGATCCCGAC
TATGGATGTGCATGAG

protein sequence of jgi.p|Nanoce1779_2|148267

>mRNA_990-protein ID=mRNA_990-protein|Name=jgi.p|Nanoce1779_2|148267|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MLRGLALPSRREVGPCLRTAETLGGLRTMRQGRRGENRDVQEFLEEAVTP
RGQFGAGAAGAGAGRGSGSYERFIKAHKETVLTEEDKRFKTWSSWKDQLE
DFKDDGQEDLTAAEEGYLGTVMESEGFGDNENNGDKAQGRKGRAGGGRGD
DAGGDDSGSYFDWNEESLFIPNLPERNEEEGGFTTDKITGKDDVQLRVNK
LLWRRLKLKARDMDLHVPSAFRRVKIVQKAMAEAREKMARDPRKEERTMS
VEKKEGKAVVTSLREDKEKEVQEGLEKKRPRQGV*

mRNA from alignment at scaffold_2:952165..953978+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_990 ID=mRNA_990|Name=jgi.p|Nanoce1779_2|148267|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_2:952165..953978+ (Nannochloropsis oceanica)
ATAGCCCCACACGTATCAAAACTAAATCGTTCATAAGCATCCACACTTCA
ACTGTTGAGGGAATTAGTCATACCAAGTAAAAACGCAGTGGCGTGCCGTT
GCCGTTAGCGTGGTTGAGTGCAATGCACCGATATCCACTTGCTTGTGCTT
GTCTGTCCCTCCCCTCTGTTTGGTGACCTTAACCACAACTTGCGCCTGCA
GCTTGTCCGTATATCCCCTGTTTCCTACGGTCACATTGACTTGTTGGTGG
GGTTGGCTGAAAGGGAAACATTTGGCTCCTTGCTCGACAACACTCCTTCG
TCATCATTAACCGCCCCACACAACACAGAGAGCAAGCCATGCTGCGCGGG
TTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCTTCGGACAGCAGG
TATATGGACTTCTACCGGTGTAATGGTGTTGCGTTGGTCGTAGAGGCATG
GCGAAGGACAGCGTAGCTCTCAACTCTTCTATCCGTTCACCCAATTACCC
CACTAACAGAAACGCTGGGTGGTCTGCGCACCATGCGACAAGGCCGACGG
GGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACGCCGCG
AGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGGTTCTG
GCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCTGACCGAG
GAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTGGAGGA
CTTCAAAGACGATGGACAAGAGTACGTGTGCACGTGGGAAGTGATTAAAA
AAAGAGATTTGACTTGGCAGCCCCCCCTCTCCCCCTCTCTTCCCTCGCCC
CTGATCCATCCTCATTCATATATTTACCTATCTCTCCAATAAATATAGAG
ATTTGACCGCAGCTGAAGAAGGATACCTAGGTACGGTGATGGAAAGCGAA
GGCTTTGGCGACAACGAGAATAATGGAGATAAGGCCCAGGGCCGCAAAGG
ACGAGCCGGAGGAGGCCGTGGTGATGACGCGGGAGGGGATGACTCGGGGA
GTTACTTCGATTGGAACGAAGAATCTTTGTTCATCCCCAACTTGCCAGAA
AGGAATGAGGAGGAGGGAGGTTTTACCACGGATAAGATCACGGGAAAGGA
TGACGTGCAATTGAGGGTGAACAAGTTGTTGTGGCGACGGTTGAAGCTCA
AGGCGAGGGATATGGATCTGCATGTCCCCTCGGCCTTTCGGAGGGTTAAA
ATTGTGCAGAAGGCCATGGCCGAAGCAAGGGAAAAGATGGCACGAGATCC
GAGGAAGGAGGAAAGGACGATGAGCGTGGAGAAGAAGGAGGGGAAGGCGG
TCGTGACGTCTTTACGAGAAGACAAGGAGAAGGAAGTGCAGGAGGGCGAC
GATGGGGGGGTAGGGGGAGTTACGGAGAATGACAGACAATCAAATAATAT
GACGGCGACGAGCGCTGCTGCTGCGGCTGCTGATCCTGATATCAAGGAGG
TGGCGAGGTTGAATCGGGCCAGAACCGTGGAGGCGATCGAGGCCGAGATT
GGACGGCTGTTGGTGGAGGGAAAGATGGACTTGCAGATGGCGCAGGATGA
GAGGAGGGCTAGAAAAAAAGCGGCCAAGGCAAGGAGTGTGAGTAAAGGGG
AGTGGGATGGGGACGAGGAAATGGGGGAGGAGGAATGGGACGATGATGAG
GAGGAAGATGATGATGAGGAGGAAACGGCGGGGATGGACGATTGGTCCAA
GATTCATATGCAGGACTTGGAGGAGGCCTTGGGTGAGGAGATCCCGACTA
TGGATGTGCATGAG

Coding sequence (CDS) from alignment at scaffold_2:952165..953978+

>mRNA_990 ID=mRNA_990|Name=jgi.p|Nanoce1779_2|148267|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_2:952165..953978+ (Nannochloropsis oceanica)
ATGCTGCGCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCT
TCGGACAGCAGAAACGCTGGGTGGTCTGCGCACCATGCGACAAGGCCGAC
GGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACGCCG
CGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGGTTC
TGGCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCTGACCG
AGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTGGAG
GACTTCAAAGACGATGGACAAGAAGATTTGACCGCAGCTGAAGAAGGATA
CCTAGGTACGGTGATGGAAAGCGAAGGCTTTGGCGACAACGAGAATAATG
GAGATAAGGCCCAGGGCCGCAAAGGACGAGCCGGAGGAGGCCGTGGTGAT
GACGCGGGAGGGGATGACTCGGGGAGTTACTTCGATTGGAACGAAGAATC
TTTGTTCATCCCCAACTTGCCAGAAAGGAATGAGGAGGAGGGAGGTTTTA
CCACGGATAAGATCACGGGAAAGGATGACGTGCAATTGAGGGTGAACAAG
TTGTTGTGGCGACGGTTGAAGCTCAAGGCGAGGGATATGGATCTGCATGT
CCCCTCGGCCTTTCGGAGGGTTAAAATTGTGCAGAAGGCCATGGCCGAAG
CAAGGGAAAAGATGGCACGAGATCCGAGGAAGGAGGAAAGGACGATGAGC
GTGGAGAAGAAGGAGGGGAAGGCGGTCGTGACGTCTTTACGAGAAGACAA
GGAGAAGGAAGTGCAGGAGGGGCTAGAAAAAAAGCGGCCAAGGCAAGGAG
TGTGAATGCTGCGCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCT
TGCCTTCGGACAGCAGAAACGCTGGGTGGTCTGCGCACCATGCGACAAGG
CCGACGGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTA
CGCCGCGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGA
GGTTCTGGCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCT
GACCGAGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGC
TGGAGGACTTCAAAGACGATGGACAAGAAGATTTGACCGCAGCTGAAGAA
GGATACCTAGGTACGGTGATGGAAAGCGAAGGCTTTGGCGACAACGAGAA
TAATGGAGATAAGGCCCAGGGCCGCAAAGGACGAGCCGGAGGAGGCCGTG
GTGATGACGCGGGAGGGGATGACTCGGGGAGTTACTTCGATTGGAACGAA
GAATCTTTGTTCATCCCCAACTTGCCAGAAAGGAATGAGGAGGAGGGAGG
TTTTACCACGGATAAGATCACGGGAAAGGATGACGTGCAATTGAGGGTGA
ACAAGTTGTTGTGGCGACGGTTGAAGCTCAAGGCGAGGGATATGGATCTG
CATGTCCCCTCGGCCTTTCGGAGGGTTAAAATTGTGCAGAAGGCCATGGC
CGAAGCAAGGGAAAAGATGGCACGAGATCCGAGGAAGGAGGAAAGGACGA
TGAGCGTGGAGAAGAAGGAGGGGAAGGCGGTCGTGACGTCTTTACGAGAA
GACAAGGAGAAGGAAGTGCAGGAGGGGCTAGAAAAAAAGCGGCCAAGGCA
AGGAGTGTGAATGCTGCGCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGG
GGCCTTGCCTTCGGACAGCAGAAACGCTGGGTGGTCTGCGCACCATGCGA
CAAGGCCGACGGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGC
CGTTACGCCGCGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTG
GGCGAGGTTCTGGCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACA
GTGCTGACCGAGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGA
CCAGCTGGAGGACTTCAAAGACGATGGACAAGAAGATTTGACCGCAGCTG
AAGAAGGATACCTAGGTACGGTGATGGAAAGCGAAGGCTTTGGCGACAAC
GAGAATAATGGAGATAAGGCCCAGGGCCGCAAAGGACGAGCCGGAGGAGG
CCGTGGTGATGACGCGGGAGGGGATGACTCGGGGAGTTACTTCGATTGGA
ACGAAGAATCTTTGTTCATCCCCAACTTGCCAGAAAGGAATGAGGAGGAG
GGAGGTTTTACCACGGATAAGATCACGGGAAAGGATGACGTGCAATTGAG
GGTGAACAAGTTGTTGTGGCGACGGTTGAAGCTCAAGGCGAGGGATATGG
ATCTGCATGTCCCCTCGGCCTTTCGGAGGGTTAAAATTGTGCAGAAGGCC
ATGGCCGAAGCAAGGGAAAAGATGGCACGAGATCCGAGGAAGGAGGAAAG
GACGATGAGCGTGGAGAAGAAGGAGGGGAAGGCGGTCGTGACGTCTTTAC
GAGAAGACAAGGAGAAGGAAGTGCAGGAGGGGCTAGAAAAAAAGCGGCCA
AGGCAAGGAGTGTGAATGCTGCGCGGGTTAGCATTGCCGAGCCGGAGAGA
GGTGGGGCCTTGCCTTCGGACAGCAGAAACGCTGGGTGGTCTGCGCACCA
TGCGACAAGGCCGACGGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAA
GAGGCCGTTACGCCGCGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGG
GGCTGGGCGAGGTTCTGGCTCCTATGAGCGGTTCATCAAGGCACACAAGG
AGACAGTGCTGACCGAGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGG
AAAGACCAGCTGGAGGACTTCAAAGACGATGGACAAGAAGATTTGACCGC
AGCTGAAGAAGGATACCTAGGTACGGTGATGGAAAGCGAAGGCTTTGGCG
ACAACGAGAATAATGGAGATAAGGCCCAGGGCCGCAAAGGACGAGCCGGA
GGAGGCCGTGGTGATGACGCGGGAGGGGATGACTCGGGGAGTTACTTCGA
TTGGAACGAAGAATCTTTGTTCATCCCCAACTTGCCAGAAAGGAATGAGG
AGGAGGGAGGTTTTACCACGGATAAGATCACGGGAAAGGATGACGTGCAA
TTGAGGGTGAACAAGTTGTTGTGGCGACGGTTGAAGCTCAAGGCGAGGGA
TATGGATCTGCATGTCCCCTCGGCCTTTCGGAGGGTTAAAATTGTGCAGA
AGGCCATGGCCGAAGCAAGGGAAAAGATGGCACGAGATCCGAGGAAGGAG
GAAAGGACGATGAGCGTGGAGAAGAAGGAGGGGAAGGCGGTCGTGACGTC
TTTACGAGAAGACAAGGAGAAGGAAGTGCAGGAGGGGCTAGAAAAAAAGC
GGCCAAGGCAAGGAGTGTGA

Synonyms

Publications