jgi.p|Nanoce1779_2|608232, mRNA_9899 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608232
Unique NamemRNA_9899
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length558
Alignment locationscaffold_41:13874..14431 -

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Properties
Property NameValue
TranscriptId608318
TrackFilteredModels2
ProteinId608232
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:13874..14431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608232gene_9899Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608232mRNA_9899-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9899CDS_9899Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9899 ID=mRNA_9899|Name=jgi.p|Nanoce1779_2|608232|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
GGGAGCTGAGGGCGATGGACGGGCGAGTCGAGTAACATTCTGCAACTGCT
GCTGCTGCTGCTGATGATGATGATGAGAGAGATGTTTGTCGTGCTGCTGC
TGCTGCTGCTGCTGCCGCTGCCGCTGCCGGAGCTCCTCCTCCCCTTGTGC
CTCCGTTTTTTTGGTTCTCCTCGTTTCGTCCATCCCCACCCTGCGGGGAT
GACGCGACCAGCAGCATTCCCACCTCATCCTCTCTTCCATTCATCTTCTT
TCGCTCCCTCCCTTCCCCAAAGAGCCTCAACCAACGATCTCCCTCCTCTT
CTCCCTTCTCCACCGCCAGCTCCCACGCACTGCCGGCCACTCGCCCCCCC
CACCCTCCCTCTTTCCCTTCCTCTACCCGCAAAAAGGGATTCGCGCCATT
TTCCACCAGCCAGGCCGCCATCTGGTAGTGTCCCCGCAGCACGGCCAGAT
AGAGCGGCGTCTCGGCCCATACCCTCCCAGGAGTGTTGAGGAGGTGCGAG
GGAGGGAGGGAAGGCGGGAGGGAGGGGGGAGGGGGCGGGGGCGGGGGCTG
GGCAGGGG
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protein sequence of jgi.p|Nanoce1779_2|608232

>mRNA_9899-protein ID=mRNA_9899-protein|Name=jgi.p|Nanoce1779_2|608232|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MMMMREMFVVLLLLLLLPLPLPELLLPLCLRFFGSPRFVHPHPAGMTRPA
AFPPHPLFHSSSFAPSLPQRASTNDLPPLLPSPPPAPTHCRPLAPPTLPL
SLPLPAKRDSRHFPPARPPSGSVPAARPDRAASRPIPSQEC*
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mRNA from alignment at scaffold_41:13874..14431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9899 ID=mRNA_9899|Name=jgi.p|Nanoce1779_2|608232|organism=Nannochloropsis oceanica|type=mRNA|length=558bp|location=Sequence derived from alignment at scaffold_41:13874..14431- (Nannochloropsis oceanica)
GGGAGCTGAGGGCGATGGACGGGCGAGTCGAGTAACATTCTGCAACTGCT
GCTGCTGCTGCTGATGATGATGATGAGAGAGATGTTTGTCGTGCTGCTGC
TGCTGCTGCTGCTGCCGCTGCCGCTGCCGGAGCTCCTCCTCCCCTTGTGC
CTCCGTTTTTTTGGTTCTCCTCGTTTCGTCCATCCCCACCCTGCGGGGAT
GACGCGACCAGCAGCATTCCCACCTCATCCTCTCTTCCATTCATCTTCTT
TCGCTCCCTCCCTTCCCCAAAGAGCCTCAACCAACGATCTCCCTCCTCTT
CTCCCTTCTCCACCGCCAGCTCCCACGCACTGCCGGCCACTCGCCCCCCC
CACCCTCCCTCTTTCCCTTCCTCTACCCGCAAAAAGGGATTCGCGCCATT
TTCCACCAGCCAGGCCGCCATCTGGTAGTGTCCCCGCAGCACGGCCAGAT
AGAGCGGCGTCTCGGCCCATACCCTCCCAGGAGTGTTGAGGAGGTGCGAG
GGAGGGAGGGAAGGCGGGAGGGAGGGGGGAGGGGGCGGGGGCGGGGGCTG
GGCAGGGG
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Coding sequence (CDS) from alignment at scaffold_41:13874..14431-

>mRNA_9899 ID=mRNA_9899|Name=jgi.p|Nanoce1779_2|608232|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_41:13874..14431- (Nannochloropsis oceanica)
ATGATGATGATGAGAGAGATGTTTGTCGTGCTGCTGCTGCTGCTGCTGCT
GCCGCTGCCGCTGCCGGAGCTCCTCCTCCCCTTGTGCCTCCGTTTTTTTG
GTTCTCCTCGTTTCGTCCATCCCCACCCTGCGGGGATGACGCGACCAGCA
GCATTCCCACCTCATCCTCTCTTCCATTCATCTTCTTTCGCTCCCTCCCT
TCCCCAAAGAGCCTCAACCAACGATCTCCCTCCTCTTCTCCCTTCTCCAC
CGCCAGCTCCCACGCACTGCCGGCCACTCGCCCCCCCCACCCTCCCTCTT
TCCCTTCCTCTACCCGCAAAAAGGGATTCGCGCCATTTTCCACCAGCCAG
GCCGCCATCTGGTAGTGTCCCCGCAGCACGGCCAGATAGAGCGGCGTCTC
GGCCCATACCCTCCCAGGAGTGTTGA
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Synonyms
Publications