jgi.p|Nanoce1779_2|608228, mRNA_9898 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608228
Unique NamemRNA_9898
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length699
Alignment locationscaffold_41:12593..13291 +

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Properties
Property NameValue
TranscriptId608314
TrackFilteredModels2
ProteinId608228
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:12593..13291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608228gene_9898Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608228mRNA_9898-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9898CDS_9898Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9898 ID=mRNA_9898|Name=jgi.p|Nanoce1779_2|608228|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ACAGGGATAGAGCTTGGATGAAGCTTCCCTCAGAGAAATGGCCCTTGCCA
CCGCCAATGGGGCTGCAGCAACATCAGCACCAGCAGCAGCAGCACCAACA
TCATGAGCATCAGCAACTGCAGCAGCAGCAGCATCGAATGGCGCCTCCAA
CTTCGATCTGCTCTTTGGACTCTTTTCCATCTGTCGCCACCGTTGTTGCT
GCTCCTCTCACGACTGCTCCATGCGCTCAGCACTGCGATGACGACTGCGC
CGACGCCATGCTGTACAAGAACCACATCCAGGACGACCAGGACGATGCAG
TCAGCACACACTCTACTTGCTCCTCCTCTTCCTCCTCCTGCTCCTCCCTC
CCCCCCAATCCCATGTGCCTCGACCCCATCCCCGACAGTCACCCGCTACC
CCGCCTCCCTCCTCTTTTCTGTGCTTCCACATCCCTTCCCCCCATCCTGC
CGCCTCCTCTTCCTCAGCTTTCTTTGGCCGAGGCGGCCTTCTTGTATGAG
TGTTGTAGCCAGGGCCTGACGAGCTACTTACAGCGAGTACTAGCAGCAGC
AGTAGAAAGGTGCCTGGCCATGCTCCCACCTGTAGAGAAAAACGAAGGGA
AGGAAGATGGGGAGGAGAGGGAGGGAGGGAGGAAGGGAGGGCAGACGTCT
GCTATATCGGTAACTTCCACCACCCGGGACAATTATGCGGGAGCAGCAC
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protein sequence of jgi.p|Nanoce1779_2|608228

>mRNA_9898-protein ID=mRNA_9898-protein|Name=jgi.p|Nanoce1779_2|608228|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSISNCSSSSIEWRLQLRSALWTLFHLSPPLLLLLSRLLHALSTAMTTAP
TPCCTRTTSRTTRTMQSAHTLLAPPLPPPAPPSPPIPCASTPSPTVTRYP
ASLLFSVLPHPFPPSCRLLFLSFLWPRRPSCMSVVARA*
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mRNA from alignment at scaffold_41:12593..13291+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9898 ID=mRNA_9898|Name=jgi.p|Nanoce1779_2|608228|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at scaffold_41:12593..13291+ (Nannochloropsis oceanica)
ACAGGGATAGAGCTTGGATGAAGCTTCCCTCAGAGAAATGGCCCTTGCCA
CCGCCAATGGGGCTGCAGCAACATCAGCACCAGCAGCAGCAGCACCAACA
TCATGAGCATCAGCAACTGCAGCAGCAGCAGCATCGAATGGCGCCTCCAA
CTTCGATCTGCTCTTTGGACTCTTTTCCATCTGTCGCCACCGTTGTTGCT
GCTCCTCTCACGACTGCTCCATGCGCTCAGCACTGCGATGACGACTGCGC
CGACGCCATGCTGTACAAGAACCACATCCAGGACGACCAGGACGATGCAG
TCAGCACACACTCTACTTGCTCCTCCTCTTCCTCCTCCTGCTCCTCCCTC
CCCCCCAATCCCATGTGCCTCGACCCCATCCCCGACAGTCACCCGCTACC
CCGCCTCCCTCCTCTTTTCTGTGCTTCCACATCCCTTCCCCCCATCCTGC
CGCCTCCTCTTCCTCAGCTTTCTTTGGCCGAGGCGGCCTTCTTGTATGAG
TGTTGTAGCCAGGGCCTGACGAGCTACTTACAGCGAGTACTAGCAGCAGC
AGTAGAAAGGTGCCTGGCCATGCTCCCACCTGTAGAGAAAAACGAAGGGA
AGGAAGATGGGGAGGAGAGGGAGGGAGGGAGGAAGGGAGGGCAGACGTCT
GCTATATCGGTAACTTCCACCACCCGGGACAATTATGCGGGAGCAGCAC
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Coding sequence (CDS) from alignment at scaffold_41:12593..13291+

>mRNA_9898 ID=mRNA_9898|Name=jgi.p|Nanoce1779_2|608228|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_41:12593..13291+ (Nannochloropsis oceanica)
ATGAGCATCAGCAACTGCAGCAGCAGCAGCATCGAATGGCGCCTCCAACT
TCGATCTGCTCTTTGGACTCTTTTCCATCTGTCGCCACCGTTGTTGCTGC
TCCTCTCACGACTGCTCCATGCGCTCAGCACTGCGATGACGACTGCGCCG
ACGCCATGCTGTACAAGAACCACATCCAGGACGACCAGGACGATGCAGTC
AGCACACACTCTACTTGCTCCTCCTCTTCCTCCTCCTGCTCCTCCCTCCC
CCCCAATCCCATGTGCCTCGACCCCATCCCCGACAGTCACCCGCTACCCC
GCCTCCCTCCTCTTTTCTGTGCTTCCACATCCCTTCCCCCCATCCTGCCG
CCTCCTCTTCCTCAGCTTTCTTTGGCCGAGGCGGCCTTCTTGTATGAGTG
TTGTAGCCAGGGCCTGA
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Synonyms
Publications