jgi.p|Nanoce1779_2|674326, mRNA_9896 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674326
Unique NamemRNA_9896
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1267
Alignment locationscaffold_41:9239..10672 +

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Properties
Property NameValue
TranscriptId674412
TrackFilteredModels2
ProteinId674326
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:9239..10672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674326gene_9896Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674326mRNA_9896-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9896CDS_9896Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9896 ID=mRNA_9896|Name=jgi.p|Nanoce1779_2|674326|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp
CATTACGGTTGACGTGCCCAAGGGATCGAGGAATCAGTTCACTTCTGAAC
TCACAGTCAACCGCACGTTGCTCCGGTGTCTTAGGCAAAGCGATTCGCGG
ATTGCCCGGGATTGCCTGGATACAAAAATGGATTAGCAATGAGACCATTG
GAAACCCCCACCTCCTCCTTGGATGACTTATGTTTCGCAATTGAGTCCGG
TAGGTATCAAATACTATTGGTACACCAACGTCACCAATCGCAGGAACCTC
CACTGGTGGAATTGAAACTGCCGGTGGGGCTGCTTTTTGCCCGACTGATG
GCCTCATCATCATCATAATCTTTATCGGTGCCGTCCAAGGGGCCTGCATG
CGGATAGAGCCGCGTGTGGTTTATGCCCGGTGGAAAAGGTCTGCAGGGGA
GGGGAGAGCTGGATGAGATCATCTGGGGCTGCGCGAGGGCAGCTTCCATT
CCACTTTGTGCCCGGGCTTTGCGGGGCCGGATATTCATCGCTGCAAACCA
TGCCTACGGCTGACGGAGGCGAGGCATCTGGAGGAACACCTGCAGCTCCT
GGGCAAGGACTGAACAAAGCCCTGGGGCAGCTACGGCGCGTACTCGTGCT
CCTAAGCGATGGCGATGGGAGCCACCGGTTACTCCTCGACGCCCTCGCCC
TGGCCCTCAAGGTGCGGCGCAGTCCCGAAGCTGTCTTATCTTGTCATGTC
TTTTCCATCATCACCTCCTGTGACGAGGTCCTAAACGCGCCGCGGCCCCA
CTTCACGGAATGGGACACAGCAACGGGGAAGCTACTCCTGCGCTTTCAGG
GTGCAGCCACCGCCTACGCCGCGCACAAGGAGCTACGCCTCATCTGCACC
AGCTACCTGCGCCAGATCTTGCTTCTGGCCCCTTTTCAGCCGTTATCTGC
ACCGGCCTGCCCAACAAATTCAAGGACGTGGAGGGAGGAGGAGACAAGCG
GGATGGCCCTCCCACTCGCTGTCCGACACGGAAACCGTCGAGGTCTCCGT
TTCCGCGGTGGCGTTTGTCTCTCTCCGCACGGAGGTCACGAAGCCATCGT
CACTGACAAGGCCATGATGGGCGTTGGCGGGGCCGAGATCACCAGCCTCC
AGAACAAGGGCCCCGCCTTCATAGCGACAAAGGTGGTGGTGGAGATACAG
CTGCTGGACTTGGTACGGGCAGAGGAGGCGAAGGGCGTGTTGGTGCCGCT
GCACGGCTACTACACCACGAAGCCGCTGCAGCTTAAGGGCGGGCAGTTAA
TCAGCCGAAAGTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|674326

>mRNA_9896-protein ID=mRNA_9896-protein|Name=jgi.p|Nanoce1779_2|674326|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MRSSGAARGQLPFHFVPGLCGAGYSSLQTMPTADGGEASGGTPAAPGQGL
NKALGQLRRVLVLLSDGDGSHRLLLDALALALKVRRSPEAVLSCHVFSII
TSCDEVLNAPRPHFTEWDTATGKLLLRFQGAATAYAAHKELRLICTSYLR
QILLLAPFQPLSAPACPTNSRTWREEETSGMALPLAVRHGNRRGLRFRGG
VCLSPHGGHEAIVTDKAMMGVGGAEITSLQNKGPAFIATKVVVEIQLLDL
VRAEEAKGVLVPLHGYYTTKPLQLKGGQLISRKL*
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mRNA from alignment at scaffold_41:9239..10672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9896 ID=mRNA_9896|Name=jgi.p|Nanoce1779_2|674326|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_41:9239..10672+ (Nannochloropsis oceanica)
CATTACGGTTGACGTGCCCAAGGGATCGAGGAATCAGTTCACTTCTGAAC
TCACAGTCAACCGCACGTTGCTCCGGTGTCTTAGGCAAAGCGATTCGCGG
ATTGCCCGGGATTGCCTGGATACAAAAATGGATTAGCAATGAGACCATTG
GAAACCCCCACCTCCTCCTTGGATGACTTATGTTTCGCAATTGAGTCCGG
TAGGTATCAAATACTATTGGTACACCAACGTCACCAATCGCAGGAACCTC
CACTGGTGGAATTGAAACTGCCGGTGGGGCTGCTTTTTGCCCGACTGATG
GCCTCATCATCATCATAATCTTTATCGGTGCCGTCCAAGGGGCCTGCATG
CGGATAGAGCCGCGTGTGGTTTATGCCCGGTGGAAAAGGTCTGCAGGGGA
GGGGAGAGCTGGATGAGATCATCTGGGGCTGCGCGAGGGCAGCTTCCATT
CCACTTTGTGCCCGGGCTTTGCGGGGCCGGATATTCATCGCTGCAAACCA
TGCCTACGGCTGACGGAGGCGAGGCATCTGGAGGAACACCTGCAGCTCCT
GGGCAAGGACTGGTAGGGCATGCCCCCGCAACTTAACGATGTGCAATAAT
TCTTCGTGTAGATGATACAGAGGACGGAGCACGTCACGCGGAGGCTGGAG
CGGGCGCGCATGCAGATTGACGGCCATGCGGTAGGTTCACCCCAAGAACA
AAGCCCTGGGGCAGCTACGGCGCGTACTCGTGCTCCTAAGCGATGGCGAT
GGGAGCCACCGGTTACTCCTCGACGCCCTCGCCCTGGCCCTCAAGGTGCG
GCGCAGTCCCGAAGCTGTCTTATCTTGTCATGTCTTTTCCATCATCACCT
CCTGTGACGAGGTCCTAAACGCGCCGCGGCCCCACTTCACGGAATGGGAC
ACAGCAACGGGGAAGCTACTCCTGCGCTTTCAGGGTGCAGCCACCGCCTA
CGCCGCGCACAAGGAGCTACGCCTCATCTGCACCAGCTACCTGCGCCAGA
TCTTGCTTCTGGCCCCTTTTCAGCCGTTATCTGCACCGGCCTGCCCAACA
AATTCAAGGACGTGGAGGGAGGAGGAGACAAGCGGGATGGCCCTCCCACT
CGCTGTCCGACACGGAAACCGTCGAGGTCTCCGTTTCCGCGGTGGCGTTT
GTCTCTCTCCGCACGGAGGTCACGAAGCCATCGTCACTGACAAGGCCATG
ATGGGCGTTGGCGGGGCCGAGATCACCAGCCTCCAGAACAAGGGCGTGGG
CAAGGGCCTGCTCCCCTCCATTCCCTAGCCCGCCTTCATAGCGACAAAGG
TGGTGGTGGAGATACAGCTGCTGGACTTGGTACGGGCAGAGGAGGCGAAG
GGCGTGTTGGTGCCGCTGCACGGCTACTACACCACGAAGCCGCTGCAGCT
TAAGGGCGGGCAGTTAATCAGCCGAAAGTTGTGA
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Coding sequence (CDS) from alignment at scaffold_41:9239..10672+

>mRNA_9896 ID=mRNA_9896|Name=jgi.p|Nanoce1779_2|674326|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_41:9239..10672+ (Nannochloropsis oceanica)
ATGAGATCATCTGGGGCTGCGCGAGGGCAGCTTCCATTCCACTTTGTGCC
CGGGCTTTGCGGGGCCGGATATTCATCGCTGCAAACCATGCCTACGGCTG
ACGGAGGCGAGGCATCTGGAGGAACACCTGCAGCTCCTGGGCAAGGACTG
AACAAAGCCCTGGGGCAGCTACGGCGCGTACTCGTGCTCCTAAGCGATGG
CGATGGGAGCCACCGGTTACTCCTCGACGCCCTCGCCCTGGCCCTCAAGG
TGCGGCGCAGTCCCGAAGCTGTCTTATCTTGTCATGTCTTTTCCATCATC
ACCTCCTGTGACGAGGTCCTAAACGCGCCGCGGCCCCACTTCACGGAATG
GGACACAGCAACGGGGAAGCTACTCCTGCGCTTTCAGGGTGCAGCCACCG
CCTACGCCGCGCACAAGGAGCTACGCCTCATCTGCACCAGCTACCTGCGC
CAGATCTTGCTTCTGGCCCCTTTTCAGCCGTTATCTGCACCGGCCTGCCC
AACAAATTCAAGGACGTGGAGGGAGGAGGAGACAAGCGGGATGGCCCTCC
CACTCGCTGTCCGACACGGAAACCGTCGAGGTCTCCGTTTCCGCGGTGGC
GTTTGTCTCTCTCCGCACGGAGGTCACGAAGCCATCGTCACTGACAAGGC
CATGATGGGCGTTGGCGGGGCCGAGATCACCAGCCTCCAGAACAAGGGCC
CCGCCTTCATAGCGACAAAGGTGGTGGTGGAGATACAGCTGCTGGACTTG
GTACGGGCAGAGGAGGCGAAGGGCGTGTTGGTGCCGCTGCACGGCTACTA
CACCACGAAGCCGCTGCAGCTTAAGGGCGGGCAGTTAATCAGCCGAAAGT
TGTGAATGAGATCATCTGGGGCTGCGCGAGGGCAGCTTCCATTCCACTTT
GTGCCCGGGCTTTGCGGGGCCGGATATTCATCGCTGCAAACCATGCCTAC
GGCTGACGGAGGCGAGGCATCTGGAGGAACACCTGCAGCTCCTGGGCAAG
GACTGAACAAAGCCCTGGGGCAGCTACGGCGCGTACTCGTGCTCCTAAGC
GATGGCGATGGGAGCCACCGGTTACTCCTCGACGCCCTCGCCCTGGCCCT
CAAGGTGCGGCGCAGTCCCGAAGCTGTCTTATCTTGTCATGTCTTTTCCA
TCATCACCTCCTGTGACGAGGTCCTAAACGCGCCGCGGCCCCACTTCACG
GAATGGGACACAGCAACGGGGAAGCTACTCCTGCGCTTTCAGGGTGCAGC
CACCGCCTACGCCGCGCACAAGGAGCTACGCCTCATCTGCACCAGCTACC
TGCGCCAGATCTTGCTTCTGGCCCCTTTTCAGCCGTTATCTGCACCGGCC
TGCCCAACAAATTCAAGGACGTGGAGGGAGGAGGAGACAAGCGGGATGGC
CCTCCCACTCGCTGTCCGACACGGAAACCGTCGAGGTCTCCGTTTCCGCG
GTGGCGTTTGTCTCTCTCCGCACGGAGGTCACGAAGCCATCGTCACTGAC
AAGGCCATGATGGGCGTTGGCGGGGCCGAGATCACCAGCCTCCAGAACAA
GGGCCCCGCCTTCATAGCGACAAAGGTGGTGGTGGAGATACAGCTGCTGG
ACTTGGTACGGGCAGAGGAGGCGAAGGGCGTGTTGGTGCCGCTGCACGGC
TACTACACCACGAAGCCGCTGCAGCTTAAGGGCGGGCAGTTAATCAGCCG
AAAGTTGTGAATGAGATCATCTGGGGCTGCGCGAGGGCAGCTTCCATTCC
ACTTTGTGCCCGGGCTTTGCGGGGCCGGATATTCATCGCTGCAAACCATG
CCTACGGCTGACGGAGGCGAGGCATCTGGAGGAACACCTGCAGCTCCTGG
GCAAGGACTGAACAAAGCCCTGGGGCAGCTACGGCGCGTACTCGTGCTCC
TAAGCGATGGCGATGGGAGCCACCGGTTACTCCTCGACGCCCTCGCCCTG
GCCCTCAAGGTGCGGCGCAGTCCCGAAGCTGTCTTATCTTGTCATGTCTT
TTCCATCATCACCTCCTGTGACGAGGTCCTAAACGCGCCGCGGCCCCACT
TCACGGAATGGGACACAGCAACGGGGAAGCTACTCCTGCGCTTTCAGGGT
GCAGCCACCGCCTACGCCGCGCACAAGGAGCTACGCCTCATCTGCACCAG
CTACCTGCGCCAGATCTTGCTTCTGGCCCCTTTTCAGCCGTTATCTGCAC
CGGCCTGCCCAACAAATTCAAGGACGTGGAGGGAGGAGGAGACAAGCGGG
ATGGCCCTCCCACTCGCTGTCCGACACGGAAACCGTCGAGGTCTCCGTTT
CCGCGGTGGCGTTTGTCTCTCTCCGCACGGAGGTCACGAAGCCATCGTCA
CTGACAAGGCCATGATGGGCGTTGGCGGGGCCGAGATCACCAGCCTCCAG
AACAAGGGCCCCGCCTTCATAGCGACAAAGGTGGTGGTGGAGATACAGCT
GCTGGACTTGGTACGGGCAGAGGAGGCGAAGGGCGTGTTGGTGCCGCTGC
ACGGCTACTACACCACGAAGCCGCTGCAGCTTAAGGGCGGGCAGTTAATC
AGCCGAAAGTTGTGA
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Synonyms
Publications