jgi.p|Nanoce1779_2|608217, mRNA_9895 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608217
Unique Name	mRNA_9895
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2777
Alignment location	scaffold_41:6060..9024 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608303
Track	FilteredModels2
ProteinId	608217

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:6060..9024 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608217	gene_9895	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608217	mRNA_9895-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9895	CDS_9895	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_41:6060..9024+
coding sequence from alignment at scaffold_41:6060..9024+

mRNA sequence

>mRNA_9895 ID=mRNA_9895|Name=jgi.p|Nanoce1779_2|608217|organism=Nannochloropsis oceanica|type=mRNA|length=2777bp
CTCCCTCCCTCCCTTCTTGCTTTCCCCTGTTCCTTCCCTTTCTCTTGTTA
TGCAAATCCTCGTGTGTGCATGCAACTTTTTCCTCCTCCATGCCCGTTCT
GTCTCCCTTGCTATCTACTTCGTTCTTGCTGCTGCTGCGGCTGGTAGGTG
GCCGCGAGAGCGAGAGAGGCAAGGGAAGGGTAGCAAACCCTGGCACGACT
GTGCCTTCTGCCGGCACCCACCGCTGCTGCTGCTGCTGCTGCCGCTGCTG
GTGGTGGTGGTGTTGATGGTTATCGTCTTTGCAGTCCTCTTTGAGCACAT
TCTCACCGCTATTCTGTCTCGGGTTGTGCAAACACGAGTCGGTGTCTGTA
TGCCCTCGGGGTGCTGTTATCCCTCCACCAACTGAGGCTGTCGTTGTCGA
TGCTGCTACTGCTGCTGCTGCTTGGACAACGGCTGCACTACCGTTATTAT
CGACGAAGTCAAGTATGGCCCCAATACCGGTAGAGACCTGCATATCCACT
TCCAAACATGCTGCTGCTGCTCCTCCTGCTGTTTTTGTTGTTTCTCGTAC
TCCTTGTGCTGCTGCTGCTGCTGCTGCTGCTGTATCGTTTCCTCTTTTTC
CTCCTTCTCCTCTTCCTTCTCCATCTCCTCCTTCTCCTTCGCTTCGGGTC
ATCTTCGCTCGCTTTTCTCGCGCTGGTGGCACGAAGAGAGAGCATGGTCC
ACTGTAACAACAGTCGGTCGTGGCGGAGGACGAAGAAATAGATGAGATGG
TGGGCGATAACGAGGACAAGTGCGCGGGAAACGGCAAAGGGGGTGGAAGG
GAGGTGGAGAGAGAGAAAGGGGAAGAGGGCGGGAGGGAGGAGGGGGAGGG
CAGCGGCCATCGTGACAGATTATTGTCCCTCCGGAAATTGCGGGCGCATT
TCATGTATCTTTTTCCCGGCTGGTCGGTAATATGGCGAGAGGGAGGACAA
ATATCGATGTATTGGAGGGCCGCATATACATACCGTGCCCCCCCCATCGC
CCCTCTCGCTTTGCCCTCTTCAGACAGACCTCCCCCCTTCCCCGCCGATG
AAGGTACAGGCACCGGCAAGAGCACCTGATGGTTGGTGATGAGGAAGAGC
TTCGCCTCTCCATCCCTCGGACAACCCTTCAAGAGAAAGGACTGCTTCGA
GGGGGTCATTTCTGTCATGCCGAGGATTAACATCGATTCGGCGTATGTCA
CACGGTCCTCCCGGCACACCAAAGCAGGGTGAACGAGCAGCTGAATGGCG
TGCCTTCCAAGGATCTGGGCCTCCAAGTCGGACTGAGGGTCGATGAGCCA
TTTTTGGCAGATATCGTTGGCCGTCTGGACGATATAGTCGCTCTCCGGGT
CGGTTATTGAAAATATACATGCCCGGCTCTCGTCGTTGGCTGAAATGAAG
AACGGCGTGCCCCGGAGAGCCTGGCTGGCTACGGCGATCCGGTGGAACTT
GCCGATGGTCTCGGCTCGGAGGGCAGAGCACGGGGGGGAGGTGAGGAGGG
TGGACGGGCTTTCGAGCTCGATAGGGGTGATGGAGAGAGCTTTGGCTATG
GCGGAAGAAAGTGAGTAGGTGACGTCGCGCCCGACAGCGAGGGACCTGGC
ATGAACCCAAATAAGGTGTCAAGCAGCGATTCATCACATAGTGTAAGTAA
CGATTATTTAATGGCTGTGCATGGAGGAAAGACAGGGAGAGAAGAAACCA
AACATAAACAGACGTACCAGGCCTGCCACATGCGTAGGCGAGTCACAACG
CGCTCTCGACTTATACGTCCTTCGGCATGGAGACGATGAAAGGCCGTCAG
AGCGTATGGGACTTGACTCAAGGGGTCATTCCGCGAAAATACTAGATCCG
CAAAGGGAGTCTCGACCTCGTTGGCTTCCCCCTCCTCCCTCCCTTTCTCC
CCTTCCTCCGGTGCGACAGCTTGACTTTCACTTTCGCCACTGGCGAGGCT
GCGGCGACGGTAACGAGAACGAGTGCTTGCCAGAGGATAATCAGGAAGAT
GAGAACGAGGAAGAGGAAGAGAAGTATTTTTGCTGCAGCGGTAAGAGCGT
TCAAAGCAGCGGTCGCTGTGTGGGTGGGTGTGGATTTGACGATTATTTTC
ACAATGTACCATCACCTTCAGCACTCAATCAACTTACTCTTCCTTTTTCT
AGCTTTCTGGCACTCATCAACCAGTCGTGCAGCCGTCCTTCCCTTCCTTG
TTCGTATCCCCTCCCTTTTCCCACTCCCTCTCTCCCTCCCTCCGTCTTCC
TCATTCACTCCTCCCCATCAACGACACATCCCATATCGAATACCACCCAT
GCCTGGACCGAGAGGACTTGCTTATTACTCAAACAGCGACAGCCTCAAGC
AAGTACGAGAAATGGCTTCTTGCGATTACATGGAAGAAAGGATAACCGTA
CTTCGACCGGATAGCCCCGCCCATTGTTCTGGCTGACATTGATGGGAGGA
AGCTCATTCACCAGACAAACGGCACACACTTACCAGGGGAAATTACCGTC
ACATTTCACCTTGTCTCGGCTGTCGAGTGCATGTGCGAGTGTAAATGCGG
TAAAAGTTGTAAAGTGAGTACTATACAAGAAGCCCTCCATCCGCATCCCT
TGACTTGGTCAAGCAAAATCACCAAGTCACCATCAGCGCACCCACGTCAC
CCGGGGCCTTCCAACAGATCAGAAAAAGGACAGGGGCTTACGGACGAGGA
ACACCACATTGTGCTTACCTGCAGTGGAGGCAGGGCTTTTGATTCCGTTT
GCCCGTCTCTTGATTCATAATCCACTG

protein sequence of jgi.p|Nanoce1779_2|608217

>mRNA_9895-protein ID=mRNA_9895-protein|Name=jgi.p|Nanoce1779_2|608217|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MEERQGEKKPNINRRTRPATCVGESQRALDLYVLRHGDDERPSERMGLDS
RGHSAKILDPQRESRPRWLPPPPSLSPLPPVRQLDFHFRHWRGCGDGNEN
ECLPEDNQEDENEEEEEKYFCCSGKSVQSSGRCVGGCGFDDYFHNVPSPS
ALNQLTLPFSSFLALINQSCSRPSLPCSYPLPFPTPSLPPSVFLIHSSPS
TTHPISNTTHAWTERTCLLLKQRQPQASTRNGFLRLHGRKDNRTSTG*

mRNA from alignment at scaffold_41:6060..9024+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9895 ID=mRNA_9895|Name=jgi.p|Nanoce1779_2|608217|organism=Nannochloropsis oceanica|type=mRNA|length=2965bp|location=Sequence derived from alignment at scaffold_41:6060..9024+ (Nannochloropsis oceanica)
CTCCCTCCCTCCCTTCTTGCTTTCCCCTGTTCCTTCCCTTTCTCTTGTTA
TGCAAATCCTCGTGTGTGCATGCAACTTTTTCCTCCTCCATGCCCGTTCT
GTCTCCCTTGCTATCTACTTCGTTCTTGCTGCTGCTGCGGCTGGTAGGTG
GCCGCGAGAGCGAGAGAGGCAAGGGAAGGGTAGCAAACCCTGGCACGACT
GTGCCTTCTGCCGGCACCCACCGCTGCTGCTGCTGCTGCTGCCGCTGCTG
GTGGTGGTGGTGTTGATGGTTATCGTCTTTGCAGTCCTCTTTGAGCACAT
TCTCACCGCTATTCTGTCTCGGGTTGTGCAAACACGAGTCGGTGTCTGTA
TGCCCTCGGGGTGCTGTTATCCCTCCACCAACTGAGGCTGTCGTTGTCGA
TGCTGCTACTGCTGCTGCTGCTTGGACAACGGCTGCACTACCGTTATTAT
CGACGAAGTCAAGTATGGCCCCAATACCGGTAGAGACCTGCATATCCACT
TCCAAACATGCTGCTGCTGCTCCTCCTGCTGTTTTTGTTGTTTCTCGTAC
TCCTTGTGCTGCTGCTGCTGCTGCTGCTGCTGTATCGTTTCCTCTTTTTC
CTCCTTCTCCTCTTCCTTCTCCATCTCCTCCTTCTCCTTCGCTTCGGGTC
ATCTTCGCTCGCTTTTCTCGCGCTGGTGGCACGAAGAGAGAGCATGGTCC
ACTGTAACAACAGTCGGTCGTGGCGGAGGACGAAGAAATAGATGAGATGG
TGGGCGATAACGAGGACAAGTGCGCGGGAAACGGCAAAGGGGGTGGAAGG
GAGGTGGAGAGAGAGAAAGGGGAAGAGGGCGGGAGGGAGGAGGGGGAGGG
CAGCGGCCATCGTGACAGATTATTGTCCCTCCGGAAATTGCGGGCGCATT
TCATGTATCTTTTTCCCGGCTGGTCGGTAATATGGCGAGAGGGAGGACAA
ATATCGATGTATTGGAGGGCCGCATATACATACCGTGCCCCCCCCATCGC
CCCTCTCGCTTTGCCCTCTTCAGACAGACCTCCCCCCTTCCCCGCCGATG
AAGGTACAGGCACCGGCAAGAGCACCTGATGGTTGGTGATGAGGAAGAGC
TTCGCCTCTCCATCCCTCGGACAACCCTTCAAGAGAAAGGACTGCTTCGA
GGGGGTCATTTCTGTCATGCCGAGGATTAACATCGATTCGGCGTATGTCA
CACGGTCCTCCCGGCACACCAAAGCAGGGTGAACGAGCAGCTGAATGGCG
TGCCTTCCAAGGATCTGGGCCTCCAAGTCGGACTGAGGGTCGATGAGCCA
TTTTTGGCAGATATCGTTGGCCGTCTGGACGATATAGTCGCTCTCCGGGT
CGGTTATTGAAAATATACATGCCCGGCTCTCGTCGTTGGCTGAAATGAAG
AACGGCGTGCCCCGGAGAGCCTGGAGGATGGATAGAGAGGGGGGAGGGGG
ATGGGAGGAGGGAGGGGGGAAATGAGAAATTTAAATTAGCGTGGACTTGA
TGATTCTTGGAGCCGGGAGAGAAGCGATGAAACATAGATCGCAAGAAAGG
GAGGAGGGGAACGATGCAGGACGATCATCATCACCAACATGACATCACGT
CGACGGACCTGGCTGGCTACGGCGATCCGGTGGAACTTGCCGATGGTCTC
GGCTCGGAGGGCAGAGCACGGGGGGGAGGTGAGGAGGGTGGACGGGCTTT
CGAGCTCGATAGGGGTGATGGAGAGAGCTTTGGCTATGGCGGAAGAAAGT
GAGTAGGTGACGTCGCGCCCGACAGCGAGGGACCTGGCATGAACCCAAAT
AAGGTGTCAAGCAGCGATTCATCACATAGTGTAAGTAACGATTATTTAAT
GGCTGTGCATGGAGGAAAGACAGGGAGAGAAGAAACCAAACATAAACAGA
CGTACCAGGCCTGCCACATGCGTAGGCGAGTCACAACGCGCTCTCGACTT
ATACGTCCTTCGGCATGGAGACGATGAAAGGCCGTCAGAGCGTATGGGAC
TTGACTCAAGGGGTCATTCCGCGAAAATACTAGATCCGCAAAGGGAGTCT
CGACCTCGTTGGCTTCCCCCTCCTCCCTCCCTTTCTCCCCTTCCTCCGGT
GCGACAGCTTGACTTTCACTTTCGCCACTGGCGAGGCTGCGGCGACGGTA
ACGAGAACGAGTGCTTGCCAGAGGATAATCAGGAAGATGAGAACGAGGAA
GAGGAAGAGAAGTATTTTTGCTGCAGCGGTAAGAGCGTTCAAAGCAGCGG
TCGCTGTGTGGGTGGGTGTGGATTTGACGATTATTTTCACAATGTACCAT
CACCTTCAGCACTCAATCAACTTACTCTTCCTTTTTCTAGCTTTCTGGCA
CTCATCAACCAGTCGTGCAGCCGTCCTTCCCTTCCTTGTTCGTATCCCCT
CCCTTTTCCCACTCCCTCTCTCCCTCCCTCCGTCTTCCTCATTCACTCCT
CCCCATCAACGACACATCCCATATCGAATACCACCCATGCCTGGACCGAG
AGGACTTGCTTATTACTCAAACAGCGACAGCCTCAAGCAAGTACGAGAAA
TGGCTTCTTGCGATTACATGGAAGAAAGGATAACCGTACTTCGACCGGAT
AGCCCCGCCCATTGTTCTGGCTGACATTGATGGGAGGAAGCTCATTCACC
AGACAAACGGCACACACTTACCAGGGGAAATTACCGTCACATTTCACCTT
GTCTCGGCTGTCGAGTGCATGTGCGAGTGTAAATGCGGTAAAAGTTGTAA
AGTGAGTACTATACAAGAAGCCCTCCATCCGCATCCCTTGACTTGGTCAA
GCAAAATCACCAAGTCACCATCAGCGCACCCACGTCACCCGGGGCCTTCC
AACAGATCAGAAAAAGGACAGGGGCTTACGGACGAGGAACACCACATTGT
GCTTACCTGCAGTGGAGGCAGGGCTTTTGATTCCGTTTGCCCGTCTCTTG
ATTCATAATCCACTG

Coding sequence (CDS) from alignment at scaffold_41:6060..9024+

>mRNA_9895 ID=mRNA_9895|Name=jgi.p|Nanoce1779_2|608217|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_41:6060..9024+ (Nannochloropsis oceanica)
ATGGAGGAAAGACAGGGAGAGAAGAAACCAAACATAAACAGACGTACCAG
GCCTGCCACATGCGTAGGCGAGTCACAACGCGCTCTCGACTTATACGTCC
TTCGGCATGGAGACGATGAAAGGCCGTCAGAGCGTATGGGACTTGACTCA
AGGGGTCATTCCGCGAAAATACTAGATCCGCAAAGGGAGTCTCGACCTCG
TTGGCTTCCCCCTCCTCCCTCCCTTTCTCCCCTTCCTCCGGTGCGACAGC
TTGACTTTCACTTTCGCCACTGGCGAGGCTGCGGCGACGGTAACGAGAAC
GAGTGCTTGCCAGAGGATAATCAGGAAGATGAGAACGAGGAAGAGGAAGA
GAAGTATTTTTGCTGCAGCGGTAAGAGCGTTCAAAGCAGCGGTCGCTGTG
TGGGTGGGTGTGGATTTGACGATTATTTTCACAATGTACCATCACCTTCA
GCACTCAATCAACTTACTCTTCCTTTTTCTAGCTTTCTGGCACTCATCAA
CCAGTCGTGCAGCCGTCCTTCCCTTCCTTGTTCGTATCCCCTCCCTTTTC
CCACTCCCTCTCTCCCTCCCTCCGTCTTCCTCATTCACTCCTCCCCATCA
ACGACACATCCCATATCGAATACCACCCATGCCTGGACCGAGAGGACTTG
CTTATTACTCAAACAGCGACAGCCTCAAGCAAGTACGAGAAATGGCTTCT
TGCGATTACATGGAAGAAAGGATAACCGTACTTCGACCGGATAG

Synonyms

Publications