jgi.p|Nanoce1779_2|667949, mRNA_989 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667949
Unique Name	mRNA_989
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2753
Alignment location	scaffold_2:946865..949617 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668035
Track	FilteredModels2
ProteinId	667949

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:946865..949617 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667949	gene_989	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667949	mRNA_989-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_989	CDS_989	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:946865..949617+
coding sequence from alignment at scaffold_2:946865..949617+

mRNA sequence

>mRNA_989 ID=mRNA_989|Name=jgi.p|Nanoce1779_2|667949|organism=Nannochloropsis oceanica|type=mRNA|length=2753bp
GCGCACGGGCTCAGACTTTCCCCGCTTTCGTACTCTTTCTCTTGAACTTC
CCTACTTTACATTCTCAGCACTTATTTACTCTCCTTTGCGTACACGACGT
GAATCTCTCAAGGCACAGGTCAATCAATCTCTCGGGTGGATCAAGAAACA
TCACGCGTTGGCCGGATACACCTAGCCTCTCCACTGCCAAAGCACCATGG
CACCACACCCGCCGCCAAGCTCCGAGCCAGCCTTGGAGGAGTTCATGCGC
CCGGACGCCTCTTTCTTGACAGAGTTGCGGAAACGCGGACAGGAAATGGC
GGAAGATTTTGTGGCCTTTGAGCTTTACGTGACGGAGGGGACAGGTTACA
AGGAGAATGCCGATGGTCAACAGAAGACGACAGATCTAGCGAAGTGCGTG
GCTGCACGTGTGCTGCACGTCACGGAGACGTATCGGGCAGCGTATCCCTG
GCACTTCGAAGCATTCGCGTTCTTCCCCCTCGAGAACGACTCTCCGACCT
TTGAACCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTATCCCTCCTCC
TCTTTGACCACCACTTCCCTGCCACTCCTGCAAGGCCGTGTATGCGTCGG
AGAGAACGTGGAAGACGAATGGTTTGTCGTCTGGCTGCTACAGCAGGCCA
CAGCAGACCCTGAACTGGCGGCGCTAGGGTTAACGGCACGAGTTTGGGAC
GCTGATGGAGATTTCTTGTTGATTCAAGCTGCCTTGGTGATTCCTGATTG
GTTGGACCCAGATAACAGTATGTTTCGTGTCTGGATTCGGGGCGGGCGAT
TTCATTTTTTATCTGAGGTGCATCATCCGTTGACCGCAGTCACTCGGCCT
CTGACGGCACAAAGGGCTTTACTGCTCTTGGCTTCCTCCTCCTCTTCCTC
TTCCTCCCCTACCTCGACGGTAGCACCCTGGCTTGATGGTGTACTGGATG
AGCGTCTCGGCATTTATCCCGATGCCATCGAAGGGTCTAAGCACCGTGCT
GCTTGCTATCTCCCTTTATCCATTGCTGTGCTTTTACGGGAGCGACCTTA
TCTAGTAGCAGCAGCTGTGCGGGCGTTGCGATCCCGAGAACCAGGAGAGT
TGTTGAGAATGATGAAAGGAGAAAGGGGAAGTGGAGGAGGAGGGATGGGA
GGAGGGGGTGGGGGAGGGGAGCTGAGGTTTGAACCTAGGCCGTTGGTGCC
TGTGTGTGTGACTTTTTCGAGGTATTTGTTTGGACAGGTGGAGGCGGACG
AATTGCAGCCACCAAAGGCCTATTTGACCGCTATTGCTGATGTCATGACG
ATGGGAGGAGAAAGGGGGGGAAGAATGGGAGAGAAGAAAGAAGAGGGGAA
TCGCGGCAGGGACCGAATGAAAGCAGCAGTGTCAAGAGGAGTGCGATTGG
CGTGTGGGTTGGAGATACTCTATTGGAGAAGTAAGCAAGGGGAGGAAAGA
GGAAGAGAGGGAGGCCAGGAAGAGTGGAAGGCGTATTTGGCACGGCTGCA
GGGGAAGGGCTTTTGGGATGGAGCCATGGAGGGGTCGAAGGAGTACAGGG
AAAGGATGACTCTTGCTAAGAAGGCCTTTCAGGAGAGAAGAGCCTCCAGC
TGTCAAAACGGAGGAGCAGCAGGAGAGAGCGGCGGAGGGGAGGAGACGTA
TGAGATAATCGACGAAATATTGCTAAAAGAGGGGGATAAAATGAAAGTGG
AGGATTTTGCACAGGCGCTGTCGGAGCTTCGGGCGGATGATGGCGAGGAA
TGGATGGAAATTGTGCCGGGGGAATTGGACGAGTTGTTGGAAAAGTATGG
GCAGCCTTTGACGGGAGAAGGAGAAGGAAGGATGTTCTTCGATGATGATG
AAGAGGATGCAGAGGAGGAAGAGGAGGGAGAGGAAGAGGAAGAGAAAGAG
GAAGAGGAGGAGGGAGGGAGGGATGGAAGGGGGGAGGACTTGAAATCGAT
GGTAGAGGGGATGAAGCATTTTATAGGCGCCATGGCTGGGTTAGAGGGAG
CGGAGATAACGGGAGGGAGGAGAGCGAGCACCAGTGACGATGGCAATGGT
CTTAGAGCTGCAAAGAAGGGCGAGGACGTGAGCTTTGATGTGAGTCGGTT
ATTGGACATTTTGGAAGGGCGAGATATAGAGAGGAGTTCGCGGGCGGGGA
TGATGGTGGGAAGGACGGAGGGAGGGATGCACTTGGGCAATGAGGAGGAT
GGAGAAGAGGAGGTGGAGATGGTAGGTCGTTCAAAGGAGAGAGTGTACAC
ACGCGAAGTCAAAGTGAAGAGTTGGAATGGAGGGGACAGCGACGATGAAG
ACGATAGTGACGAGGAGGAGGAAGAGGATGAAAGGGAAGGAGAGAAGGAG
GAGAAGGAAGCGATGGAGGCGTACATAACACAGATGGAACGGGAGCTGAA
GGGCACGACTTTGGCTTATACGTTTGACCGCGTGCCACGTGCGTGTGCAA
ATGGGGACGGTGAAAAGCGTGACAAACTCGAGAAAGAAGAGGAGAATGTG
GACGAAGATGAAGAGCTACCACCGGTCGATGTGGATTTGAACTTAGTGAG
ACACTTGCTCGAATCTGTGGCGGCACAAGGCTCACTTCCGGGTCCCGCCT
CTAATATGTTGGGTGAGGTGATGAAGAGTATGGAGGCCGATTAGGAAGTG
AGAGGGGGGAAATAGGTAAAAGGGGAAAGCAGGGATTCAAGAGCATACGC
TATCAATGACGATGAAATAAAAATGACAAAGAATGAAAGAAAGAAAGCAC
CCA

protein sequence of jgi.p|Nanoce1779_2|667949

>mRNA_989-protein ID=mRNA_989-protein|Name=jgi.p|Nanoce1779_2|667949|organism=Nannochloropsis oceanica|type=polypeptide|length=816bp
MAPHPPPSSEPALEEFMRPDASFLTELRKRGQEMAEDFVAFELYVTEGTG
YKENADGQQKTTDLAKCVAARVLHVTETYRAAYPWHFEAFAFFPLENDSP
TFEPSSSSSSSSPSYPSSSLTTTSLPLLQGRVCVGENVEDEWFVVWLLQQ
ATADPELAALGLTARVWDADGDFLLIQAALVIPDWLDPDNSMFRVWIRGG
RFHFLSEVHHPLTAVTRPLTAQRALLLLASSSSSSSSPTSTVAPWLDGVL
DERLGIYPDAIEGSKHRAACYLPLSIAVLLRERPYLVAAAVRALRSREPG
ELLRMMKGERGSGGGGMGGGGGGGELRFEPRPLVPVCVTFSRYLFGQVEA
DELQPPKAYLTAIADVMTMGGERGGRMGEKKEEGNRGRDRMKAAVSRGVR
LACGLEILYWRSKQGEERGREGGQEEWKAYLARLQGKGFWDGAMEGSKEY
RERMTLAKKAFQERRASSCQNGGAAGESGGGEETYEIIDEILLKEGDKMK
VEDFAQALSELRADDGEEWMEIVPGELDELLEKYGQPLTGEGEGRMFFDD
DEEDAEEEEEGEEEEEKEEEEEGGRDGRGEDLKSMVEGMKHFIGAMAGLE
GAEITGGRRASTSDDGNGLRAAKKGEDVSFDVSRLLDILEGRDIERSSRA
GMMVGRTEGGMHLGNEEDGEEEVEMVGRSKERVYTREVKVKSWNGGDSDD
EDDSDEEEEEDEREGEKEEKEAMEAYITQMERELKGTTLAYTFDRVPRAC
ANGDGEKRDKLEKEEENVDEDEELPPVDVDLNLVRHLLESVAAQGSLPGP
ASNMLGEVMKSMEAD*

mRNA from alignment at scaffold_2:946865..949617+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_989 ID=mRNA_989|Name=jgi.p|Nanoce1779_2|667949|organism=Nannochloropsis oceanica|type=mRNA|length=2753bp|location=Sequence derived from alignment at scaffold_2:946865..949617+ (Nannochloropsis oceanica)
GCGCACGGGCTCAGACTTTCCCCGCTTTCGTACTCTTTCTCTTGAACTTC
CCTACTTTACATTCTCAGCACTTATTTACTCTCCTTTGCGTACACGACGT
GAATCTCTCAAGGCACAGGTCAATCAATCTCTCGGGTGGATCAAGAAACA
TCACGCGTTGGCCGGATACACCTAGCCTCTCCACTGCCAAAGCACCATGG
CACCACACCCGCCGCCAAGCTCCGAGCCAGCCTTGGAGGAGTTCATGCGC
CCGGACGCCTCTTTCTTGACAGAGTTGCGGAAACGCGGACAGGAAATGGC
GGAAGATTTTGTGGCCTTTGAGCTTTACGTGACGGAGGGGACAGGTTACA
AGGAGAATGCCGATGGTCAACAGAAGACGACAGATCTAGCGAAGTGCGTG
GCTGCACGTGTGCTGCACGTCACGGAGACGTATCGGGCAGCGTATCCCTG
GCACTTCGAAGCATTCGCGTTCTTCCCCCTCGAGAACGACTCTCCGACCT
TTGAACCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTATCCCTCCTCC
TCTTTGACCACCACTTCCCTGCCACTCCTGCAAGGCCGTGTATGCGTCGG
AGAGAACGTGGAAGACGAATGGTTTGTCGTCTGGCTGCTACAGCAGGCCA
CAGCAGACCCTGAACTGGCGGCGCTAGGGTTAACGGCACGAGTTTGGGAC
GCTGATGGAGATTTCTTGTTGATTCAAGCTGCCTTGGTGATTCCTGATTG
GTTGGACCCAGATAACAGTATGTTTCGTGTCTGGATTCGGGGCGGGCGAT
TTCATTTTTTATCTGAGGTGCATCATCCGTTGACCGCAGTCACTCGGCCT
CTGACGGCACAAAGGGCTTTACTGCTCTTGGCTTCCTCCTCCTCTTCCTC
TTCCTCCCCTACCTCGACGGTAGCACCCTGGCTTGATGGTGTACTGGATG
AGCGTCTCGGCATTTATCCCGATGCCATCGAAGGGTCTAAGCACCGTGCT
GCTTGCTATCTCCCTTTATCCATTGCTGTGCTTTTACGGGAGCGACCTTA
TCTAGTAGCAGCAGCTGTGCGGGCGTTGCGATCCCGAGAACCAGGAGAGT
TGTTGAGAATGATGAAAGGAGAAAGGGGAAGTGGAGGAGGAGGGATGGGA
GGAGGGGGTGGGGGAGGGGAGCTGAGGTTTGAACCTAGGCCGTTGGTGCC
TGTGTGTGTGACTTTTTCGAGGTATTTGTTTGGACAGGTGGAGGCGGACG
AATTGCAGCCACCAAAGGCCTATTTGACCGCTATTGCTGATGTCATGACG
ATGGGAGGAGAAAGGGGGGGAAGAATGGGAGAGAAGAAAGAAGAGGGGAA
TCGCGGCAGGGACCGAATGAAAGCAGCAGTGTCAAGAGGAGTGCGATTGG
CGTGTGGGTTGGAGATACTCTATTGGAGAAGTAAGCAAGGGGAGGAAAGA
GGAAGAGAGGGAGGCCAGGAAGAGTGGAAGGCGTATTTGGCACGGCTGCA
GGGGAAGGGCTTTTGGGATGGAGCCATGGAGGGGTCGAAGGAGTACAGGG
AAAGGATGACTCTTGCTAAGAAGGCCTTTCAGGAGAGAAGAGCCTCCAGC
TGTCAAAACGGAGGAGCAGCAGGAGAGAGCGGCGGAGGGGAGGAGACGTA
TGAGATAATCGACGAAATATTGCTAAAAGAGGGGGATAAAATGAAAGTGG
AGGATTTTGCACAGGCGCTGTCGGAGCTTCGGGCGGATGATGGCGAGGAA
TGGATGGAAATTGTGCCGGGGGAATTGGACGAGTTGTTGGAAAAGTATGG
GCAGCCTTTGACGGGAGAAGGAGAAGGAAGGATGTTCTTCGATGATGATG
AAGAGGATGCAGAGGAGGAAGAGGAGGGAGAGGAAGAGGAAGAGAAAGAG
GAAGAGGAGGAGGGAGGGAGGGATGGAAGGGGGGAGGACTTGAAATCGAT
GGTAGAGGGGATGAAGCATTTTATAGGCGCCATGGCTGGGTTAGAGGGAG
CGGAGATAACGGGAGGGAGGAGAGCGAGCACCAGTGACGATGGCAATGGT
CTTAGAGCTGCAAAGAAGGGCGAGGACGTGAGCTTTGATGTGAGTCGGTT
ATTGGACATTTTGGAAGGGCGAGATATAGAGAGGAGTTCGCGGGCGGGGA
TGATGGTGGGAAGGACGGAGGGAGGGATGCACTTGGGCAATGAGGAGGAT
GGAGAAGAGGAGGTGGAGATGGTAGGTCGTTCAAAGGAGAGAGTGTACAC
ACGCGAAGTCAAAGTGAAGAGTTGGAATGGAGGGGACAGCGACGATGAAG
ACGATAGTGACGAGGAGGAGGAAGAGGATGAAAGGGAAGGAGAGAAGGAG
GAGAAGGAAGCGATGGAGGCGTACATAACACAGATGGAACGGGAGCTGAA
GGGCACGACTTTGGCTTATACGTTTGACCGCGTGCCACGTGCGTGTGCAA
ATGGGGACGGTGAAAAGCGTGACAAACTCGAGAAAGAAGAGGAGAATGTG
GACGAAGATGAAGAGCTACCACCGGTCGATGTGGATTTGAACTTAGTGAG
ACACTTGCTCGAATCTGTGGCGGCACAAGGCTCACTTCCGGGTCCCGCCT
CTAATATGTTGGGTGAGGTGATGAAGAGTATGGAGGCCGATTAGGAAGTG
AGAGGGGGGAAATAGGTAAAAGGGGAAAGCAGGGATTCAAGAGCATACGC
TATCAATGACGATGAAATAAAAATGACAAAGAATGAAAGAAAGAAAGCAC
CCA

Coding sequence (CDS) from alignment at scaffold_2:946865..949617+

>mRNA_989 ID=mRNA_989|Name=jgi.p|Nanoce1779_2|667949|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_2:946865..949617+ (Nannochloropsis oceanica)
ATGGCACCACACCCGCCGCCAAGCTCCGAGCCAGCCTTGGAGGAGTTCAT
GCGCCCGGACGCCTCTTTCTTGACAGAGTTGCGGAAACGCGGACAGGAAA
TGGCGGAAGATTTTGTGGCCTTTGAGCTTTACGTGACGGAGGGGACAGGT
TACAAGGAGAATGCCGATGGTCAACAGAAGACGACAGATCTAGCGAAGTG
CGTGGCTGCACGTGTGCTGCACGTCACGGAGACGTATCGGGCAGCGTATC
CCTGGCACTTCGAAGCATTCGCGTTCTTCCCCCTCGAGAACGACTCTCCG
ACCTTTGAACCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTATCCCTC
CTCCTCTTTGACCACCACTTCCCTGCCACTCCTGCAAGGCCGTGTATGCG
TCGGAGAGAACGTGGAAGACGAATGGTTTGTCGTCTGGCTGCTACAGCAG
GCCACAGCAGACCCTGAACTGGCGGCGCTAGGGTTAACGGCACGAGTTTG
GGACGCTGATGGAGATTTCTTGTTGATTCAAGCTGCCTTGGTGATTCCTG
ATTGGTTGGACCCAGATAACAGTATGTTTCGTGTCTGGATTCGGGGCGGG
CGATTTCATTTTTTATCTGAGGTGCATCATCCGTTGACCGCAGTCACTCG
GCCTCTGACGGCACAAAGGGCTTTACTGCTCTTGGCTTCCTCCTCCTCTT
CCTCTTCCTCCCCTACCTCGACGGTAGCACCCTGGCTTGATGGTGTACTG
GATGAGCGTCTCGGCATTTATCCCGATGCCATCGAAGGGTCTAAGCACCG
TGCTGCTTGCTATCTCCCTTTATCCATTGCTGTGCTTTTACGGGAGCGAC
CTTATCTAGTAGCAGCAGCTGTGCGGGCGTTGCGATCCCGAGAACCAGGA
GAGTTGTTGAGAATGATGAAAGGAGAAAGGGGAAGTGGAGGAGGAGGGAT
GGGAGGAGGGGGTGGGGGAGGGGAGCTGAGGTTTGAACCTAGGCCGTTGG
TGCCTGTGTGTGTGACTTTTTCGAGGTATTTGTTTGGACAGGTGGAGGCG
GACGAATTGCAGCCACCAAAGGCCTATTTGACCGCTATTGCTGATGTCAT
GACGATGGGAGGAGAAAGGGGGGGAAGAATGGGAGAGAAGAAAGAAGAGG
GGAATCGCGGCAGGGACCGAATGAAAGCAGCAGTGTCAAGAGGAGTGCGA
TTGGCGTGTGGGTTGGAGATACTCTATTGGAGAAGTAAGCAAGGGGAGGA
AAGAGGAAGAGAGGGAGGCCAGGAAGAGTGGAAGGCGTATTTGGCACGGC
TGCAGGGGAAGGGCTTTTGGGATGGAGCCATGGAGGGGTCGAAGGAGTAC
AGGGAAAGGATGACTCTTGCTAAGAAGGCCTTTCAGGAGAGAAGAGCCTC
CAGCTGTCAAAACGGAGGAGCAGCAGGAGAGAGCGGCGGAGGGGAGGAGA
CGTATGAGATAATCGACGAAATATTGCTAAAAGAGGGGGATAAAATGAAA
GTGGAGGATTTTGCACAGGCGCTGTCGGAGCTTCGGGCGGATGATGGCGA
GGAATGGATGGAAATTGTGCCGGGGGAATTGGACGAGTTGTTGGAAAAGT
ATGGGCAGCCTTTGACGGGAGAAGGAGAAGGAAGGATGTTCTTCGATGAT
GATGAAGAGGATGCAGAGGAGGAAGAGGAGGGAGAGGAAGAGGAAGAGAA
AGAGGAAGAGGAGGAGGGAGGGAGGGATGGAAGGGGGGAGGACTTGAAAT
CGATGGTAGAGGGGATGAAGCATTTTATAGGCGCCATGGCTGGGTTAGAG
GGAGCGGAGATAACGGGAGGGAGGAGAGCGAGCACCAGTGACGATGGCAA
TGGTCTTAGAGCTGCAAAGAAGGGCGAGGACGTGAGCTTTGATGTGAGTC
GGTTATTGGACATTTTGGAAGGGCGAGATATAGAGAGGAGTTCGCGGGCG
GGGATGATGGTGGGAAGGACGGAGGGAGGGATGCACTTGGGCAATGAGGA
GGATGGAGAAGAGGAGGTGGAGATGGTAGGTCGTTCAAAGGAGAGAGTGT
ACACACGCGAAGTCAAAGTGAAGAGTTGGAATGGAGGGGACAGCGACGAT
GAAGACGATAGTGACGAGGAGGAGGAAGAGGATGAAAGGGAAGGAGAGAA
GGAGGAGAAGGAAGCGATGGAGGCGTACATAACACAGATGGAACGGGAGC
TGAAGGGCACGACTTTGGCTTATACGTTTGACCGCGTGCCACGTGCGTGT
GCAAATGGGGACGGTGAAAAGCGTGACAAACTCGAGAAAGAAGAGGAGAA
TGTGGACGAAGATGAAGAGCTACCACCGGTCGATGTGGATTTGAACTTAG
TGAGACACTTGCTCGAATCTGTGGCGGCACAAGGCTCACTTCCGGGTCCC
GCCTCTAATATGTTGGGTGAGGTGATGAAGAGTATGGAGGCCGATTAG

Synonyms

Publications