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Properties
| Property Name | Value |
|---|
| TranscriptId | 609598 |
| Track | FilteredModels2 |
| ProteinId | 609512 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_45 | supercontig | scaffold_45:159166..161254 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9888 ID=mRNA_9888|Name=jgi.p|Nanoce1779_2|609512|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
ACAGTTCACCAATAGCAATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCG
GCCGTCACAGGCACGCAAGCGTTCTTTGCAGCCTCCCCTGCTCAGGTGGC
AACAACGACGACTAGAAGGACGGGGGCCATGCGTATGATGTCTTCGGAGA
ACCTGGACGATCCCCGCCTGATGGAAATGCCCAAATTCCGTCCTCGTCCT
CGTCAATACAAGGGCAAGGCTTTCGTGACACGCGACAACATTGACACTGA
TCAGATTATTCCCGCCGAGTACCTCACCCTGGTGCCTTCCAAGATCGACG
AATACGAGCAGCTGGGCGCTTACGCTCTAATCGGCCTGCCTGAAGCCCTC
TACAGCACGCGGTTTGTGGACCCCGGGAAGACCAAGAGCGAGTATCCCAT
CATAATCGGCGGCGACAACTTCGGTTGTGGCTCCTCCCGAGAGCACGCCC
CCATCGCTCTCGGTGCAGCTGGCACACGTGTGGTGATTGCTGAGACCTAC
GCACGTATCTTCTTCCGCAACTGCATCTCCACCGGCGAGATCTACCCCTA
CGAGTGTCCCGGGCAGCGCTTGTGTGATGAAATTTCAACAGGCGACGAGG
TATCCGTCGACCTCGACACAGACTTGCTCATCAACCACAGCACGGGCAAG
GAATACAAGCTACAGGCATTGGGAGACGCGGGACCTGTGATTGAGGCCGG
CGGCATCTTCCCCTTCGCGGTCAAGACGGGCATGATTGAGAAAGCGGGGG
TGTAGGGGAATGAAAGGGGAAGGGAGGGAGGAAGGAAGGGGACTTCTCAA
CCCATATGGCCAGGGAGGCAGTAAAAGAGAGAAGGGAAATGATTGAATAA
ACAAGCAAAAGAAGAAAGAAAGAAAGAAAGAAAGAAGAAAGAAGAAGAGG
AAAG back to topprotein sequence of jgi.p|Nanoce1779_2|609512 >mRNA_9888-protein ID=mRNA_9888-protein|Name=jgi.p|Nanoce1779_2|609512|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MNKPVLLLLAAAVTGTQAFFAASPAQVATTTTRRTGAMRMMSSENLDDPR
LMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLG
AYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGA
AGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLD
TDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKAGV* back to topmRNA from alignment at scaffold_45:159166..161254+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9888 ID=mRNA_9888|Name=jgi.p|Nanoce1779_2|609512|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp|location=Sequence derived from alignment at scaffold_45:159166..161254+ (Nannochloropsis oceanica)
ACAGTTCACCAATAGCAATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCG
GCCGTCACAGGCACGCAAGCGTTCTTTGCAGCCTCCCCTGCTCAGGTTCG
TTACATAGGAAGGAAGTAAGGGATGGAGGGGGGATAAGAGATCGAGATAA
TATGCATGTATAATGCAGCAGCAACGTTACATAGACCAAAGCCGAGCAAT
GCGATGGGAACCCATCGATCCTTACTATCTTTCCCAACCTTCCTCCTTGC
CCCCCTCTTTCACGTAGGTGGCAACAACGACGACTAGAAGGACGGGGGCC
ATGCGTATGATGTCTTCGGAGAACCTGGACGATCCCCGCCTGATGGTAGG
GAGGGAGGGCGGGAGGGAGGGAGGGAGAAAGGGAGGGATGCAGGGAAGTA
AGGAAAGGAGGAAGGAAGGAGGGATGAAGAGAAGGAAAAAGGGAGAAAGG
GAAGGGGGGAGAGAGGCAGGAAGAAGGCACAGAGAGAGGGTGGGTTGAGA
AGGAAAGGAGAGGAGGAAAGGAGGACAAGGATGCTATAATCTCAAAGAGT
GGTAGAGCTGCTTATGGAGGCGGAAAAGCATACGCGATACAAAAATCCTC
CAGCCATTCAGCCCCTCCTCTTCCTCCCTCCCTCCTCTTCCTCCCTCCCT
CCCTCTCCCCCCTCACCTCCAGGAAATGCCCAAATTCCGTCCTCGTCCTC
GTCAATACAAGGGCAAGGCTTTCGTGACACGCGACAACATTGACACTGAT
CAGATTATTCCCGCCGAGTACCTCACCCTGGTGCCTTCCAAGGTACATCC
TCTCTCCCTTCCTCCCGCCTGCCCTCCCTCCCTCCCTCCCCCTTCCCTCT
CTCAATGTCTCCCTCTCTCATGCCCCTCCCTCCTTCCCTCTCTCCCTCAG
ATCGACGAATACGAGCAGCTGGGCGCTTACGCTCTAATCGGCCTGCCTGA
AGCCCTCTACAGCACGCGGTTTGTGGACCCCGGGAAGACCAAGAGCGAGT
ATCCCATCATAATCGGCGGCGACAACTTCGGTTGTGGCTCCTCCCGAGAG
GTACCTCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCCCTCG
CCCCCTGGAAAGGAAGAAGCCCTTACATGACATGGGATGATGACGAGAAG
CCTCTTGTTCCCTTTTTCTCATCACACGCATAACAGTCGCTGAGACATGT
CACTCAAACACTCGCTCCCTCACTAACACCCTCCCTCCCTCCCTTCTTCC
GTCCCTTCCTCAGCACGCCCCCATCGCTCTCGGTGCAGCTGGCACACGTG
TGGTGATTGCTGAGACCTACGCACGTATCTTCTTCCGCAACTGCATCTCC
ACCGGCGAGGTACTTAGGCATCCCTCCCTTCCCTCCTTATCACCCTCTTT
CCTTCCCTCCCTCCCTCCCTCCCTCTCTTATTCCCGCTTTCAGCCTCTCC
CACGATCGCAAGCATCTTTACCATTCCGTCCCTCTTCCCTCCCTCCCTCC
CTCCTTCCCTCCCTCTCTTCCTCCCTCCTTCTCGCTCTCCCTCCCTCCTT
CCCTCCTCCCCCTCTTCCTAGATCTACCCCTACGAGTGTCCCGGGCAGCG
CTTGTGTGATGAAATTTCAACAGGCGACGAGGTATCCGTCGACCTCGACA
CAGACTTGCTCATCAACCACAGGTTCGTGCCCTCCCTCCCTTCCCCCCTT
CCTCCCTCCCTCCCTCCCTCCCTTCCTCGCACCGGCAAGCGAGACGCCGA
GCCTGTCATTGACGTCCTCACCTTCTCCCCTCCCTCTCCTCCCTCCCGCC
CTCCCTCGCCCCCTCCCCTCCCCAGCACGGGCAAGGAATACAAGCTACAG
GCATTGGGAGACGCGGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTT
CGCGGTCAAGACGGGCATGATTGAGAAAGCGGGGGTGTAGGGGAATGAAA
GGGGAAGGGAGGGAGGAAGGAAGGGGACTTCTCAACCCATATGGCCAGGG
AGGCAGTAAAAGAGAGAAGGGAAATGATTGAATAAACAAGCAAAAGAAGA
AAGAAAGAAAGAAAGAAAGAAGAAAGAAGAAGAGGAAAG back to topCoding sequence (CDS) from alignment at scaffold_45:159166..161254+ >mRNA_9888 ID=mRNA_9888|Name=jgi.p|Nanoce1779_2|609512|organism=Nannochloropsis oceanica|type=CDS|length=5166bp|location=Sequence derived from alignment at scaffold_45:159166..161254+ (Nannochloropsis oceanica)
ATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCA
AGCGTTCTTTGCAGCCTCCCCTGCTCAGGTGGCAACAACGACGACTAGAA
GGACGGGGGCCATGCGTATGATGTCTTCGGAGAACCTGGACGATCCCCGC
CTGATGGAAATGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAA
GGCTTTCGTGACACGCGACAACATTGACACTGATCAGATTATTCCCGCCG
AGTACCTCACCCTGGTGCCTTCCAAGATCGACGAATACGAGCAGCTGGGC
GCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTACAGCACGCGGTTTGT
GGACCCCGGGAAGACCAAGAGCGAGTATCCCATCATAATCGGCGGCGACA
ACTTCGGTTGTGGCTCCTCCCGAGAGCACGCCCCCATCGCTCTCGGTGCA
GCTGGCACACGTGTGGTGATTGCTGAGACCTACGCACGTATCTTCTTCCG
CAACTGCATCTCCACCGGCGAGATCTACCCCTACGAGTGTCCCGGGCAGC
GCTTGTGTGATGAAATTTCAACAGGCGACGAGGTATCCGTCGACCTCGAC
ACAGACTTGCTCATCAACCACAGCACGGGCAAGGAATACAAGCTACAGGC
ATTGGGAGACGCGGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCG
CGGTCAAGACGGGCATGATTGAGAAAGCGGGGGTGTAGATGAACAAGCCT
GTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCAAGCGTTCTTTGC
AGCCTCCCCTGCTCAGGTGGCAACAACGACGACTAGAAGGACGGGGGCCA
TGCGTATGATGTCTTCGGAGAACCTGGACGATCCCCGCCTGATGGAAATG
CCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAAGGCTTTCGTGAC
ACGCGACAACATTGACACTGATCAGATTATTCCCGCCGAGTACCTCACCC
TGGTGCCTTCCAAGATCGACGAATACGAGCAGCTGGGCGCTTACGCTCTA
ATCGGCCTGCCTGAAGCCCTCTACAGCACGCGGTTTGTGGACCCCGGGAA
GACCAAGAGCGAGTATCCCATCATAATCGGCGGCGACAACTTCGGTTGTG
GCTCCTCCCGAGAGCACGCCCCCATCGCTCTCGGTGCAGCTGGCACACGT
GTGGTGATTGCTGAGACCTACGCACGTATCTTCTTCCGCAACTGCATCTC
CACCGGCGAGATCTACCCCTACGAGTGTCCCGGGCAGCGCTTGTGTGATG
AAATTTCAACAGGCGACGAGGTATCCGTCGACCTCGACACAGACTTGCTC
ATCAACCACAGCACGGGCAAGGAATACAAGCTACAGGCATTGGGAGACGC
GGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCGCGGTCAAGACGG
GCATGATTGAGAAAGCGGGGGTGTAGATGAACAAGCCTGTTCTCCTTCTC
CTCGCGGCGGCCGTCACAGGCACGCAAGCGTTCTTTGCAGCCTCCCCTGC
TCAGGTGGCAACAACGACGACTAGAAGGACGGGGGCCATGCGTATGATGT
CTTCGGAGAACCTGGACGATCCCCGCCTGATGGAAATGCCCAAATTCCGT
CCTCGTCCTCGTCAATACAAGGGCAAGGCTTTCGTGACACGCGACAACAT
TGACACTGATCAGATTATTCCCGCCGAGTACCTCACCCTGGTGCCTTCCA
AGATCGACGAATACGAGCAGCTGGGCGCTTACGCTCTAATCGGCCTGCCT
GAAGCCCTCTACAGCACGCGGTTTGTGGACCCCGGGAAGACCAAGAGCGA
GTATCCCATCATAATCGGCGGCGACAACTTCGGTTGTGGCTCCTCCCGAG
AGCACGCCCCCATCGCTCTCGGTGCAGCTGGCACACGTGTGGTGATTGCT
GAGACCTACGCACGTATCTTCTTCCGCAACTGCATCTCCACCGGCGAGAT
CTACCCCTACGAGTGTCCCGGGCAGCGCTTGTGTGATGAAATTTCAACAG
GCGACGAGGTATCCGTCGACCTCGACACAGACTTGCTCATCAACCACAGC
ACGGGCAAGGAATACAAGCTACAGGCATTGGGAGACGCGGGACCTGTGAT
TGAGGCCGGCGGCATCTTCCCCTTCGCGGTCAAGACGGGCATGATTGAGA
AAGCGGGGGTGTAGATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCC
GTCACAGGCACGCAAGCGTTCTTTGCAGCCTCCCCTGCTCAGGTGGCAAC
AACGACGACTAGAAGGACGGGGGCCATGCGTATGATGTCTTCGGAGAACC
TGGACGATCCCCGCCTGATGGAAATGCCCAAATTCCGTCCTCGTCCTCGT
CAATACAAGGGCAAGGCTTTCGTGACACGCGACAACATTGACACTGATCA
GATTATTCCCGCCGAGTACCTCACCCTGGTGCCTTCCAAGATCGACGAAT
ACGAGCAGCTGGGCGCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTAC
AGCACGCGGTTTGTGGACCCCGGGAAGACCAAGAGCGAGTATCCCATCAT
AATCGGCGGCGACAACTTCGGTTGTGGCTCCTCCCGAGAGCACGCCCCCA
TCGCTCTCGGTGCAGCTGGCACACGTGTGGTGATTGCTGAGACCTACGCA
CGTATCTTCTTCCGCAACTGCATCTCCACCGGCGAGATCTACCCCTACGA
GTGTCCCGGGCAGCGCTTGTGTGATGAAATTTCAACAGGCGACGAGGTAT
CCGTCGACCTCGACACAGACTTGCTCATCAACCACAGCACGGGCAAGGAA
TACAAGCTACAGGCATTGGGAGACGCGGGACCTGTGATTGAGGCCGGCGG
CATCTTCCCCTTCGCGGTCAAGACGGGCATGATTGAGAAAGCGGGGGTGT
AGATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACG
CAAGCGTTCTTTGCAGCCTCCCCTGCTCAGGTGGCAACAACGACGACTAG
AAGGACGGGGGCCATGCGTATGATGTCTTCGGAGAACCTGGACGATCCCC
GCCTGATGGAAATGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGC
AAGGCTTTCGTGACACGCGACAACATTGACACTGATCAGATTATTCCCGC
CGAGTACCTCACCCTGGTGCCTTCCAAGATCGACGAATACGAGCAGCTGG
GCGCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTACAGCACGCGGTTT
GTGGACCCCGGGAAGACCAAGAGCGAGTATCCCATCATAATCGGCGGCGA
CAACTTCGGTTGTGGCTCCTCCCGAGAGCACGCCCCCATCGCTCTCGGTG
CAGCTGGCACACGTGTGGTGATTGCTGAGACCTACGCACGTATCTTCTTC
CGCAACTGCATCTCCACCGGCGAGATCTACCCCTACGAGTGTCCCGGGCA
GCGCTTGTGTGATGAAATTTCAACAGGCGACGAGGTATCCGTCGACCTCG
ACACAGACTTGCTCATCAACCACAGCACGGGCAAGGAATACAAGCTACAG
GCATTGGGAGACGCGGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTT
CGCGGTCAAGACGGGCATGATTGAGAAAGCGGGGGTGTAGATGAACAAGC
CTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCAAGCGTTCTTT
GCAGCCTCCCCTGCTCAGGTGGCAACAACGACGACTAGAAGGACGGGGGC
CATGCGTATGATGTCTTCGGAGAACCTGGACGATCCCCGCCTGATGGAAA
TGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAAGGCTTTCGTG
ACACGCGACAACATTGACACTGATCAGATTATTCCCGCCGAGTACCTCAC
CCTGGTGCCTTCCAAGATCGACGAATACGAGCAGCTGGGCGCTTACGCTC
TAATCGGCCTGCCTGAAGCCCTCTACAGCACGCGGTTTGTGGACCCCGGG
AAGACCAAGAGCGAGTATCCCATCATAATCGGCGGCGACAACTTCGGTTG
TGGCTCCTCCCGAGAGCACGCCCCCATCGCTCTCGGTGCAGCTGGCACAC
GTGTGGTGATTGCTGAGACCTACGCACGTATCTTCTTCCGCAACTGCATC
TCCACCGGCGAGATCTACCCCTACGAGTGTCCCGGGCAGCGCTTGTGTGA
TGAAATTTCAACAGGCGACGAGGTATCCGTCGACCTCGACACAGACTTGC
TCATCAACCACAGCACGGGCAAGGAATACAAGCTACAGGCATTGGGAGAC
GCGGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCGCGGTCAAGAC
GGGCATGATTGAGAAAGCGGGGGTGTAGATGAACAAGCCTGTTCTCCTTC
TCCTCGCGGCGGCCGTCACAGGCACGCAAGCGTTCTTTGCAGCCTCCCCT
GCTCAGGTGGCAACAACGACGACTAGAAGGACGGGGGCCATGCGTATGAT
GTCTTCGGAGAACCTGGACGATCCCCGCCTGATGGAAATGCCCAAATTCC
GTCCTCGTCCTCGTCAATACAAGGGCAAGGCTTTCGTGACACGCGACAAC
ATTGACACTGATCAGATTATTCCCGCCGAGTACCTCACCCTGGTGCCTTC
CAAGATCGACGAATACGAGCAGCTGGGCGCTTACGCTCTAATCGGCCTGC
CTGAAGCCCTCTACAGCACGCGGTTTGTGGACCCCGGGAAGACCAAGAGC
GAGTATCCCATCATAATCGGCGGCGACAACTTCGGTTGTGGCTCCTCCCG
AGAGCACGCCCCCATCGCTCTCGGTGCAGCTGGCACACGTGTGGTGATTG
CTGAGACCTACGCACGTATCTTCTTCCGCAACTGCATCTCCACCGGCGAG
ATCTACCCCTACGAGTGTCCCGGGCAGCGCTTGTGTGATGAAATTTCAAC
AGGCGACGAGGTATCCGTCGACCTCGACACAGACTTGCTCATCAACCACA
GCACGGGCAAGGAATACAAGCTACAGGCATTGGGAGACGCGGGACCTGTG
ATTGAGGCCGGCGGCATCTTCCCCTTCGCGGTCAAGACGGGCATGATTGA
GAAAGCGGGGGTGTAG back to top
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