jgi.p|Nanoce1779_2|609511, mRNA_9887 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609511
Unique NamemRNA_9887
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length491
Alignment locationscaffold_45:158127..158815 -

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Properties
Property NameValue
TranscriptId609597
TrackFilteredModels2
ProteinId609511
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:158127..158815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609511gene_9887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609511mRNA_9887-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9887CDS_9887Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9887 ID=mRNA_9887|Name=jgi.p|Nanoce1779_2|609511|organism=Nannochloropsis oceanica|type=mRNA|length=491bp
AGGATAGGGAATGGGCGCCGCTCCCTCTGCCGTTGTCAAGCCGGCCGTCA
TCTTGCCGCCTCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAGGAGAC
GATTTCACCTCCTCCTCCTCCACCACCACCGCATCAGCCAACCTTTGGAC
AAGCCCTACATCCTGCACATACATATTCGACTCCCTGTGGTTTTGTCTGT
CTCCGGTCTATCAAGCCAAGGAGTACTATATTTCGGGCGACTTTGATTCA
TGCGAGGAGAAGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAGGTCAA
GAAGGATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACGAAAAC
CAATCCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACGAAGTG
GAGGAGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGGTATTG
AGATGTTTTATACGGATCAAAAGTAAATAAATGATGATGAG
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protein sequence of jgi.p|Nanoce1779_2|609511

>mRNA_9887-protein ID=mRNA_9887-protein|Name=jgi.p|Nanoce1779_2|609511|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MGAAPSAVVKPAVILPPPSSSPSSESSIGDDFTSSSSTTTASANLWTSPT
SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDP
DMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVWELKERPGWY*
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mRNA from alignment at scaffold_45:158127..158815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9887 ID=mRNA_9887|Name=jgi.p|Nanoce1779_2|609511|organism=Nannochloropsis oceanica|type=mRNA|length=689bp|location=Sequence derived from alignment at scaffold_45:158127..158815- (Nannochloropsis oceanica)
AGGATAGGGAATGGGCGCCGCTCCCTCTGCCGTTGTCAAGCCGGCCGTCA
TCTTGCCGCCTCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAGGAGAC
GATTTCACCTCCTCCTCCTCCACCACCACCGCATCAGCCAACCTTTGGAC
AAGCCCTACATCCTGCACATACATATTCGACTCCCTGTGGTTTTGTCTGT
CTCCGGTCTATCAAGCCAAGGAGTACTATATTTCGGGCGACTTTGATTCA
TGCGAGGAGAAGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAGGTAAG
AACGGGCAGAAGGGGAGTAAGGGAAAGTGAAAAGGAAGGAGGGAGGAATC
GTTCGTGGTGATTTTGTCGGTGGATGGTATGAGGAGGTGATCGACGCAGG
GAGAGAGGGGACCAAGAGTGAAGCTCGCTAGTGCTACCTCCTTCCCTGTC
CCCCCACCTCAGTTCTCCCTTCCTTTTTTTTTTCGCGTATTAGGTCAAGA
AGGATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACGAAAACCA
ATCCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACGAAGTGGA
GGAGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGGTATTGAG
ATGTTTTATACGGATCAAAAGTAAATAAATGATGATGAG
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Coding sequence (CDS) from alignment at scaffold_45:158127..158815-

>mRNA_9887 ID=mRNA_9887|Name=jgi.p|Nanoce1779_2|609511|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_45:158127..158815- (Nannochloropsis oceanica)
GTCAAGAAGGATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACG
AAAACCAATCCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACG
AAGTGGAGGAGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGG
TATTGAATGGGCGCCGCTCCCTCTGCCGTTGTCAAGCCGGCCGTCATCTT
GCCGCCTCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAGGAGACGATT
TCACCTCCTCCTCCTCCACCACCACCGCATCAGCCAACCTTTGGACAAGC
CCTACATCCTGCACATACATATTCGACTCCCTGTGGTTTTGTCTGTCTCC
GGTCTATCAAGCCAAGGAGTACTATATTTCGGGCGACTTTGATTCATGCG
AGGAGAAGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAGGTCAAGAAG
GATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACGAAAACCAAT
CCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACGAAGTGGAGG
AGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGGTATTGAATG
GGCGCCGCTCCCTCTGCCGTTGTCAAGCCGGCCGTCATCTTGCCGCCTCC
ATCCTCGTCTCCCTCGTCGGAGTCCTCTATAGGAGACGATTTCACCTCCT
CCTCCTCCACCACCACCGCATCAGCCAACCTTTGGACAAGCCCTACATCC
TGCACATACATATTCGACTCCCTGTGGTTTTGTCTGTCTCCGGTCTATCA
AGCCAAGGAGTACTATATTTCGGGCGACTTTGATTCATGCGAGGAGAAGG
CAAGCGCGCTCTACATGTGTCTCTCCAACAAG
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Synonyms
Publications