jgi.p|Nanoce1779_2|315768, mRNA_9886 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|315768
Unique Name	mRNA_9886
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1278
Alignment location	scaffold_45:155488..157514 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	315854
Track	FilteredModels2
ProteinId	315768

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:155488..157514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|315768	gene_9886	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|315768	mRNA_9886-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9886	CDS_9886	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:155488..157514+
coding sequence from alignment at scaffold_45:155488..157514+

mRNA sequence

>mRNA_9886 ID=mRNA_9886|Name=jgi.p|Nanoce1779_2|315768|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
TCCTCCCCACCCCCTTTAAAATTCCGCACAGCAATAGAGGGGTCCTTAGC
TTATTACACCAGTCAGTATCTGGGAACCTTACTGTTGGCTTTGGCGTGGA
CGCAGGGGCTTGATTGCTTGCCCTATGATAATTGGCGGTTTGCGCGTCGC
TCGGTCGAAAAGCGCGTTCCTTTTATAATTGTTTGTGACAAGACACCCGT
TTTGCTGAAGTCTACGCGGATTAGACAAGAGGAAGAATGAGTAAGACACA
CTTCAAGAATGGCCCGGTCATTCCCGCGGGGCAAGGTGGGCGGCTGCTGC
GCCTGGTTGTCTCGTTATGGGGATACTCATCAATGCTAATTAGCTTTGTC
GTGGCCTGGTGGCTTATGGTCCTCGCCCTCATCTTCATCTGCCCCTTCCT
ACCTTCCGAAAAAGACCGCACCCTTTTCCTGGGATGGATTTTCCGGTACA
TCTCCTCGTACGTCATCCACCTGAATCCATTTTGGCACCTTCAAATGGTG
GGGCCGCGTCCTTCCTCCCCTCCTACAAAGACATTGGTCATGTGCAACCA
CCTCTCCAACGCCGACGCATTCTTTCTGAGCTCGGCCCTCTTGCCATGGG
AGACAAAGTACATCGCAAAGGCAGATTTGTTCCAGGTGCCCTTTGGGGGC
TGGGCCATGGGCCTGGCCGGCGACCTGGCTATTCACTTCACTCGGGACCA
TACGGGTTGGGGTGTGAAGAAAGGAACGGTTGGCAAGATGATGGAACAAT
GCAAGAGCTATTTGTCCGACAGCATTCCAATCGCCGTCTTTCCGGAGGGA
GGGAGGACAGAAAACGGCCGCCTCCGCCCGTTTAAGGACGGTTTCTTCCA
ACTGGCGCTCGACACGAACGCGGACATCCTGCCTTGCGCACTATCAGGCA
CCGAGCAGGCGTGGCCCATATACGAATCGCTCATGGGGCCCGCCACAGTG
TATGTGCGGATCGGTAGCCCCATCCCGTCTTCCTCCCATACCGTGCAAAG
CCTCAAGGCAGAAGTGGTGCGTCAAATGGAGAAGCTGCAACGGGATTTGC
CGTTACCTTTAACGGTCCCTCGAATCGCAACCGTCGTCGCAGAGGAGGGA
GGAAGGGAGGGAGGGAGGGAAAGAGAGATAGTGCCCAATGGCGGAGGAGG
AGGTGATGGAGGAAGAGGAAGACGCGAAGAGCTTGACAGAGCCCAGCCCT
CCCCTCAGTAGACACAGGAAAAAGAGACCGGCAAAGGGAAAAAGGACAGG
AGGGAGGCAGGAGAGAAAGGAGATAGCT

protein sequence of jgi.p|Nanoce1779_2|315768

>mRNA_9886-protein ID=mRNA_9886-protein|Name=jgi.p|Nanoce1779_2|315768|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MSKTHFKNGPVIPAGQGGRLLRLVVSLWGYSSMLISFVVAWWLMVLALIF
ICPFLPSEKDRTLFLGWIFRYISSYVIHLNPFWHLQMVGPRPSSPPTKTL
VMCNHLSNADAFFLSSALLPWETKYIAKADLFQVPFGGWAMGLAGDLAIH
FTRDHTGWGVKKGTVGKMMEQCKSYLSDSIPIAVFPEGGRTENGRLRPFK
DGFFQLALDTNADILPCALSGTEQAWPIYESLMGPATVYVRIGSPIPSSS
HTVQSLKAEVVRQMEKLQRDLPLPLTVPRIATVVAEEGGREGGREREIVP
NGGGGGDGGRGRREELDRAQPSPQ*

mRNA from alignment at scaffold_45:155488..157514+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9886 ID=mRNA_9886|Name=jgi.p|Nanoce1779_2|315768|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp|location=Sequence derived from alignment at scaffold_45:155488..157514+ (Nannochloropsis oceanica)
TCCTCCCCACCCCCTTTAAAATTCCGCACAGCAATAGAGGGGTCCTTAGC
TTATTACACCAGTCAGTATCTGGGAACCTTACTGTTGGCTTTGGCGTGGA
CGCAGGGGCTTGATTGCTTGCCCTATGATAATTGGCGGTTTGCGCGTCGC
TCGGTCGAAAAGCGCGTTCCTTTTATAATTGTTTGTGACAAGACACCCGT
TTTGCTGAAGTCTACGCGGATTAGACAAGAGGAAGAATGAGTAAGACACA
CTTCAAGAATGGCCCGGTCATTCCCGCGGGGCAAGGTGGGCGGCTGCTGC
GCCTGGTTGTCTCGTTATGGGGATACTCATCAATGCTAATTAGCTTTGTC
GTGGCCTGGTGGCTTATGGTAAGGACAGGCAGAAGGGAAAAGGAGGCGGA
AGGAAGGGGGAATAAGAGGAGGAGAAAGGAAGGATAAGAGCCACTGAGCT
GGTCGCATTCAGAAATGGTATGGAAGGAACTGATTCACTTTCCCCGCCCT
CCCTCCGACCCCCTTCTCGCTCCCTCCCTCTTTCCCCCTTAGGTCCTCGC
CCTCATCTTCATCTGCCCCTTCCTACCTTCCGAAAAAGACCGCACCCTTT
TCCTGGGATGGATTTTCCGGTACATCTCCTCGTACGTCATCCACCTGAAT
CCATTTTGGCACCTTCAAATGGTGGGGCCGCGTCCTTCCTCCCCTCCTAC
AAAGACATTGGTCATGTGCAACCACCTCTCCAACGCCGACGCATTCTTTC
TGAGCTCGGCCCTCTTGCCATGGGAGACAAAGTACATCGCAAAGGCAGAT
TTGTTCCAGGTACGTTTCACCTACCTTTTCGATCCCCTTGCTCTCCTTCC
ATGGCTCCCTCCGTCTCTTCCCCCCCGCATTCCTTCCATTATCCCTTCTG
AAGCCGACGCATCAGCCTTCATCTCGTATTCTCTCTCCTTTTCTCTTGAT
GGTTCTCGCTTTCCTCTAGGTGCCCTTTGGGGGCTGGGCCATGGGCCTGG
CCGGCGACCTGGCTATTCACTTCACTCGGGACCATACGGGTTGGGGTGTG
AAGAAAGGAACGGTAGGTAGTCCTTTTTTCCCTCCCTCCCTCCCTCCATC
CCTCCCTCTCTGACTTTTTTTCTCGGTTCTACTTCATTCATCCTTCTATA
GTGAAACAGCGCGACGGGCAAGACTCTTCCTCATTGGCTCCCTTTCCCTC
CCTCCCTCCCTCCATCCCTCGTTCCCTCCCTCCTTTTCTCCCTCCCTCCC
TCCTTCCCTCCTTCCCTCCCTCCCCCCCTCCAGGTTGGCAAGATGATGGA
ACAATGCAAGAGCTATTTGTCCGACAGCATTCCAATCGCCGTCTTTCCGG
AGGGAGGGAGGACAGAAAACGGCCGCCTCCGCCCGTTTAAGGACGGTTTC
TTCCAACTGGCGCTCGACACGAACGCGGACATCCTGCCTTGCGCACTATC
AGGTACGATGGGGACAACCCGCCCTCCCTCCCTCCGTCCCTCCCTCCCTC
CCTCCTTCTCTCCCTCTCTCCTCCTCTCCCCCACCTTCTGTTCATCCTCA
CCGTATGCCCATCTCTTTCCCTCTCGGTCATCCACACCGTTTCCTTCTTC
CCCATACCCCCCTCTCTATTTCAACCTCCTCCGGATCCATCACCAGGCAC
CGAGCAGGCGTGGCCCATATACGAATCGCTCATGGGGCCCGCCACAGTGT
ATGTGCGGATCGGTAGCCCCATCCCGTCTTCCTCCCATACCGTGCAAAGC
CTCAAGGCAGAAGTGGTGCGTCAAATGGAGAAGCTGCAACGGGATTTGCC
GTTACCTTTAACGGTCCCTCGAATCGCAACCGTCGTCGCAGAGGAGGGAG
GAAGGGAGGGAGGGAGGGAAAGAGAGATAGTGCCCAATGGCGGAGGAGGA
GGTGATGGAGGAAGAGGAAGACGCGAAGAGCTTGACAGAGCCCAGCCCTC
CCCTCAGTAGACACAGGAAAAAGAGACCGGCAAAGGGAAAAAGGACAGGA
GGGAGGCAGGAGAGAAAGGAGATAGCT

Coding sequence (CDS) from alignment at scaffold_45:155488..157514+

>mRNA_9886 ID=mRNA_9886|Name=jgi.p|Nanoce1779_2|315768|organism=Nannochloropsis oceanica|type=CDS|length=4875bp|location=Sequence derived from alignment at scaffold_45:155488..157514+ (Nannochloropsis oceanica)
ATGAGTAAGACACACTTCAAGAATGGCCCGGTCATTCCCGCGGGGCAAGG
TGGGCGGCTGCTGCGCCTGGTTGTCTCGTTATGGGGATACTCATCAATGC
TAATTAGCTTTGTCGTGGCCTGGTGGCTTATGGTCCTCGCCCTCATCTTC
ATCTGCCCCTTCCTACCTTCCGAAAAAGACCGCACCCTTTTCCTGGGATG
GATTTTCCGGTACATCTCCTCGTACGTCATCCACCTGAATCCATTTTGGC
ACCTTCAAATGGTGGGGCCGCGTCCTTCCTCCCCTCCTACAAAGACATTG
GTCATGTGCAACCACCTCTCCAACGCCGACGCATTCTTTCTGAGCTCGGC
CCTCTTGCCATGGGAGACAAAGTACATCGCAAAGGCAGATTTGTTCCAGG
TGCCCTTTGGGGGCTGGGCCATGGGCCTGGCCGGCGACCTGGCTATTCAC
TTCACTCGGGACCATACGGGTTGGGGTGTGAAGAAAGGAACGGTTGGCAA
GATGATGGAACAATGCAAGAGCTATTTGTCCGACAGCATTCCAATCGCCG
TCTTTCCGGAGGGAGGGAGGACAGAAAACGGCCGCCTCCGCCCGTTTAAG
GACGGTTTCTTCCAACTGGCGCTCGACACGAACGCGGACATCCTGCCTTG
CGCACTATCAGGCACCGAGCAGGCGTGGCCCATATACGAATCGCTCATGG
GGCCCGCCACAGTGTATGTGCGGATCGGTAGCCCCATCCCGTCTTCCTCC
CATACCGTGCAAAGCCTCAAGGCAGAAGTGGTGCGTCAAATGGAGAAGCT
GCAACGGGATTTGCCGTTACCTTTAACGGTCCCTCGAATCGCAACCGTCG
TCGCAGAGGAGGGAGGAAGGGAGGGAGGGAGGGAAAGAGAGATAGTGCCC
AATGGCGGAGGAGGAGGTGATGGAGGAAGAGGAAGACGCGAAGAGCTTGA
CAGAGCCCAGCCCTCCCCTCAGTAGATGAGTAAGACACACTTCAAGAATG
GCCCGGTCATTCCCGCGGGGCAAGGTGGGCGGCTGCTGCGCCTGGTTGTC
TCGTTATGGGGATACTCATCAATGCTAATTAGCTTTGTCGTGGCCTGGTG
GCTTATGGTCCTCGCCCTCATCTTCATCTGCCCCTTCCTACCTTCCGAAA
AAGACCGCACCCTTTTCCTGGGATGGATTTTCCGGTACATCTCCTCGTAC
GTCATCCACCTGAATCCATTTTGGCACCTTCAAATGGTGGGGCCGCGTCC
TTCCTCCCCTCCTACAAAGACATTGGTCATGTGCAACCACCTCTCCAACG
CCGACGCATTCTTTCTGAGCTCGGCCCTCTTGCCATGGGAGACAAAGTAC
ATCGCAAAGGCAGATTTGTTCCAGGTGCCCTTTGGGGGCTGGGCCATGGG
CCTGGCCGGCGACCTGGCTATTCACTTCACTCGGGACCATACGGGTTGGG
GTGTGAAGAAAGGAACGGTTGGCAAGATGATGGAACAATGCAAGAGCTAT
TTGTCCGACAGCATTCCAATCGCCGTCTTTCCGGAGGGAGGGAGGACAGA
AAACGGCCGCCTCCGCCCGTTTAAGGACGGTTTCTTCCAACTGGCGCTCG
ACACGAACGCGGACATCCTGCCTTGCGCACTATCAGGCACCGAGCAGGCG
TGGCCCATATACGAATCGCTCATGGGGCCCGCCACAGTGTATGTGCGGAT
CGGTAGCCCCATCCCGTCTTCCTCCCATACCGTGCAAAGCCTCAAGGCAG
AAGTGGTGCGTCAAATGGAGAAGCTGCAACGGGATTTGCCGTTACCTTTA
ACGGTCCCTCGAATCGCAACCGTCGTCGCAGAGGAGGGAGGAAGGGAGGG
AGGGAGGGAAAGAGAGATAGTGCCCAATGGCGGAGGAGGAGGTGATGGAG
GAAGAGGAAGACGCGAAGAGCTTGACAGAGCCCAGCCCTCCCCTCAGTAG
ATGAGTAAGACACACTTCAAGAATGGCCCGGTCATTCCCGCGGGGCAAGG
TGGGCGGCTGCTGCGCCTGGTTGTCTCGTTATGGGGATACTCATCAATGC
TAATTAGCTTTGTCGTGGCCTGGTGGCTTATGGTCCTCGCCCTCATCTTC
ATCTGCCCCTTCCTACCTTCCGAAAAAGACCGCACCCTTTTCCTGGGATG
GATTTTCCGGTACATCTCCTCGTACGTCATCCACCTGAATCCATTTTGGC
ACCTTCAAATGGTGGGGCCGCGTCCTTCCTCCCCTCCTACAAAGACATTG
GTCATGTGCAACCACCTCTCCAACGCCGACGCATTCTTTCTGAGCTCGGC
CCTCTTGCCATGGGAGACAAAGTACATCGCAAAGGCAGATTTGTTCCAGG
TGCCCTTTGGGGGCTGGGCCATGGGCCTGGCCGGCGACCTGGCTATTCAC
TTCACTCGGGACCATACGGGTTGGGGTGTGAAGAAAGGAACGGTTGGCAA
GATGATGGAACAATGCAAGAGCTATTTGTCCGACAGCATTCCAATCGCCG
TCTTTCCGGAGGGAGGGAGGACAGAAAACGGCCGCCTCCGCCCGTTTAAG
GACGGTTTCTTCCAACTGGCGCTCGACACGAACGCGGACATCCTGCCTTG
CGCACTATCAGGCACCGAGCAGGCGTGGCCCATATACGAATCGCTCATGG
GGCCCGCCACAGTGTATGTGCGGATCGGTAGCCCCATCCCGTCTTCCTCC
CATACCGTGCAAAGCCTCAAGGCAGAAGTGGTGCGTCAAATGGAGAAGCT
GCAACGGGATTTGCCGTTACCTTTAACGGTCCCTCGAATCGCAACCGTCG
TCGCAGAGGAGGGAGGAAGGGAGGGAGGGAGGGAAAGAGAGATAGTGCCC
AATGGCGGAGGAGGAGGTGATGGAGGAAGAGGAAGACGCGAAGAGCTTGA
CAGAGCCCAGCCCTCCCCTCAGTAGATGAGTAAGACACACTTCAAGAATG
GCCCGGTCATTCCCGCGGGGCAAGGTGGGCGGCTGCTGCGCCTGGTTGTC
TCGTTATGGGGATACTCATCAATGCTAATTAGCTTTGTCGTGGCCTGGTG
GCTTATGGTCCTCGCCCTCATCTTCATCTGCCCCTTCCTACCTTCCGAAA
AAGACCGCACCCTTTTCCTGGGATGGATTTTCCGGTACATCTCCTCGTAC
GTCATCCACCTGAATCCATTTTGGCACCTTCAAATGGTGGGGCCGCGTCC
TTCCTCCCCTCCTACAAAGACATTGGTCATGTGCAACCACCTCTCCAACG
CCGACGCATTCTTTCTGAGCTCGGCCCTCTTGCCATGGGAGACAAAGTAC
ATCGCAAAGGCAGATTTGTTCCAGGTGCCCTTTGGGGGCTGGGCCATGGG
CCTGGCCGGCGACCTGGCTATTCACTTCACTCGGGACCATACGGGTTGGG
GTGTGAAGAAAGGAACGGTTGGCAAGATGATGGAACAATGCAAGAGCTAT
TTGTCCGACAGCATTCCAATCGCCGTCTTTCCGGAGGGAGGGAGGACAGA
AAACGGCCGCCTCCGCCCGTTTAAGGACGGTTTCTTCCAACTGGCGCTCG
ACACGAACGCGGACATCCTGCCTTGCGCACTATCAGGCACCGAGCAGGCG
TGGCCCATATACGAATCGCTCATGGGGCCCGCCACAGTGTATGTGCGGAT
CGGTAGCCCCATCCCGTCTTCCTCCCATACCGTGCAAAGCCTCAAGGCAG
AAGTGGTGCGTCAAATGGAGAAGCTGCAACGGGATTTGCCGTTACCTTTA
ACGGTCCCTCGAATCGCAACCGTCGTCGCAGAGGAGGGAGGAAGGGAGGG
AGGGAGGGAAAGAGAGATAGTGCCCAATGGCGGAGGAGGAGGTGATGGAG
GAAGAGGAAGACGCGAAGAGCTTGACAGAGCCCAGCCCTCCCCTCAGTAG
ATGAGTAAGACACACTTCAAGAATGGCCCGGTCATTCCCGCGGGGCAAGG
TGGGCGGCTGCTGCGCCTGGTTGTCTCGTTATGGGGATACTCATCAATGC
TAATTAGCTTTGTCGTGGCCTGGTGGCTTATGGTCCTCGCCCTCATCTTC
ATCTGCCCCTTCCTACCTTCCGAAAAAGACCGCACCCTTTTCCTGGGATG
GATTTTCCGGTACATCTCCTCGTACGTCATCCACCTGAATCCATTTTGGC
ACCTTCAAATGGTGGGGCCGCGTCCTTCCTCCCCTCCTACAAAGACATTG
GTCATGTGCAACCACCTCTCCAACGCCGACGCATTCTTTCTGAGCTCGGC
CCTCTTGCCATGGGAGACAAAGTACATCGCAAAGGCAGATTTGTTCCAGG
TGCCCTTTGGGGGCTGGGCCATGGGCCTGGCCGGCGACCTGGCTATTCAC
TTCACTCGGGACCATACGGGTTGGGGTGTGAAGAAAGGAACGGTTGGCAA
GATGATGGAACAATGCAAGAGCTATTTGTCCGACAGCATTCCAATCGCCG
TCTTTCCGGAGGGAGGGAGGACAGAAAACGGCCGCCTCCGCCCGTTTAAG
GACGGTTTCTTCCAACTGGCGCTCGACACGAACGCGGACATCCTGCCTTG
CGCACTATCAGGCACCGAGCAGGCGTGGCCCATATACGAATCGCTCATGG
GGCCCGCCACAGTGTATGTGCGGATCGGTAGCCCCATCCCGTCTTCCTCC
CATACCGTGCAAAGCCTCAAGGCAGAAGTGGTGCGTCAAATGGAGAAGCT
GCAACGGGATTTGCCGTTACCTTTAACGGTCCCTCGAATCGCAACCGTCG
TCGCAGAGGAGGGAGGAAGGGAGGGAGGGAGGGAAAGAGAGATAGTGCCC
AATGGCGGAGGAGGAGGTGATGGAGGAAGAGGAAGACGCGAAGAGCTTGA
CAGAGCCCAGCCCTCCCCTCAGTAG

Synonyms

Publications