jgi.p|Nanoce1779_2|633855, mRNA_9884 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633855
Unique NamemRNA_9884
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length815
Alignment locationscaffold_45:144505..146798 -

Link to JBrowse

Properties
Property NameValue
TranscriptId633941
TrackFilteredModels2
ProteinId633855
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:144505..146798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633855gene_9884Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633855mRNA_9884-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9884CDS_9884Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9884 ID=mRNA_9884|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
ATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGACTCCGGCCTCTGT
CCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGGTCGCCG
AGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTA
CGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAAT
GATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGTTGAGCGAGA
AACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAGCAAG
GAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCCGAATTTAAGGCATC
CATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAA
AGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAACAGCGA
GTATCCGTGCTGCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCA
ATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTG
CCCGCTTGATGATGTGAGGAGGGAGGGAGGGAAGAGGCGAGGAGAAGTGT
AAATGAAATAAGGGTAAGATATTTGCGGGGCTGAGTGCTTCTTATTACCA
GCGTGTTGCGAGCTGCATGCTCCAGCATAGGGAAAGAGGGCAAAGACAGA
TGCAAAAGGCGAAACGTGTAAAGAGATGAGGTTGTCGAATGAAGGTGTCC
ATCGATGGTATTGTAATGGTCATTGTCAAACCTGAAAGATTTAAATAATA
ACCCAGTAAATTATG
back to top

protein sequence of jgi.p|Nanoce1779_2|633855

>mRNA_9884-protein ID=mRNA_9884-protein|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MLTEAQHCVGRQTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEAIL
RVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSK
EVIEKDLMSVRSEFKASIHAEYQKLEKEMSNVEKVLTDRHLTRRELMEQR
VSVLQNEIAQVEKRVVQYGAGTLLSLLTVGLGFARLMM*
back to top

mRNA from alignment at scaffold_45:144505..146798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9884 ID=mRNA_9884|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_45:144505..146798- (Nannochloropsis oceanica)
ATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGGTGTGTCTGTGATT CGCTAATATAACGGTAGAAAACAGGGAGGTGGCTGAAGAGGATGAGGACG AGGGAGGGAGGTCAGGGAGGTCGAAGAGGCAAAAGTGTGTTTGGCTGGCT TGTTGAGGGCGGAGTAGCACTTTTCTTGCATGCACACATCCCCTTCAGAT GTGAACGCTTGTCTCTCCCCTGGGGTTGTGTCGTCTGTGGAGACTGTCTG TGTGTACTCAGAAGGGGTCAGGGTGCTTACTCTCGCCCAACTTCCTTGAA CGCCGCAACGGACCAACAAGCCCATGTGTCCCATCCAGCCTACAAGGACC TCAGACACAGCTGTTGAGGCGAATATTCGATAATCGACTGCAGCAGGATG CACAACATGCACAGGAGTAGCCGCCTCAGGAGCTGCAGGCCTTGCAGTTG TAGCTGAGACCAATCCGACTCATGCCCTCCCTCACCCCATCTCACACCCC AGTGTTGTACAACTCCTACCTCCCTCTCGGAGACGTCCCACCACCCTTCG TATACCCTGATTCCACCTGGATACACGGCCCGATTCAGGCAAAATGCTTA TCTCCGGCCGCCGGTTGCTTCAGTCGACTGCTTGCCGTCAATGCCGCCTC GTTTCCTCCTCCTCCCCCACGCCTACCTCTACACCTCCTTCCTCTACGCC CTCCTCGTCTGGCGTTGCCCCCCCGCTCTTCTCCACCCCCTTCGCCTCTT CTTCCTCATCGAGCCCCTCCTTATCAACTGTGCAGACTCCGGCCTCTGTC CTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGGTGAGGAA GAGACGATACATGCCTTTATCATCTTCATACCTTCCCCTTCCCTACCTTT CCACCTTACTTCCTACATTCTGCCTTGACAGTCTTGAGCGATACGAATGC TTGCTTCTTTAATGCCTTATCCTCCCTAATTGTATTCGATCTTGTCTCCT GTCCTCCCTCCTCTCATGCGCCGCCCTAGGTCGCCGAGTCTCTGCAAGAA GCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTCGTCGC GGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGGTACGTAGGGGTG AACGAGGAAAGGATTTACAGGGCAGGAGCGAGGGAGAGGAAACGGTCTCA AGTCGGCTTTAAATGAAGAGCCACAACCTCCATGGCACTGTGCACAGCCG ACCCTAAGTCGACCAGGCGATTGTGACACTCAAAACCTTGACATCTAAAT CCATCACACATGATTTTGAATGCGTAGATTGCCACTCGCCGGGACCTGCT CGACCTCAAGACCGAGTTGAGCGAGAAACTATTCAGCAGCACCATGCGTT TTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATCTTATG TCCGTGCGGTACGAAGAGCAGCAAGAGCAAGGGAGAGAGAGGAGGAAAAT GGCATTGAGAAGAAGGGTCGCCTGCGTGCATTTACACGGACTTTGTTGGT TGAAAGAGAATAAGGACTCGGATATACATATCGTAACTTGTTCAAGAGGA CTCCACCAATGACGTGCCTCCCTCCTTTTTTCCCACTCTCCCTCCACACC TCCCTGCTCAGGTCCGAATTTAAGGCATCCATCCATGCCGAGTATCAGAA GCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCGGCATT TGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGGTCCGG AGGAAGGCGGGGAAAAGGGATGGAGGAAAGGGAGGCCTTCAATTCTACAC CATTGATCTATGGCTCATGTTTGCATGATATTATGCGTCACTCAAATGCT CTTCATCCCTCTTTCCATCCCTTCCTACTCCCCCTCTCGCACAGAACGAG ATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACGCTTCT GTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTGAGGAG GGAGGGAGGGAAGAGGCGAGGAGAAGTGTAAATGAAATAAGGGTAAGATA TTTGCGGGGCTGAGTGCTTCTTATTACCAGCGTGTTGCGAGCTGCATGCT CCAGCATAGGGAAAGAGGGCAAAGACAGATGCAAAAGGCGAAACGTGTAA AGAGATGAGGTTGTCGAATGAAGGTGTCCATCGATGGTATTGTAATGGTC ATTGTCAAACCTGAAAGATTTAAATAATAACCCAGTAAATTATG
back to top

Coding sequence (CDS) from alignment at scaffold_45:144505..146798-

>mRNA_9884 ID=mRNA_9884|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_45:144505..146798- (Nannochloropsis oceanica)
AACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGAC
GCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGT
GAGTCCGAATTTAAGGCATCCATCCATGCCGAGTATCAGAAGCTTGAGAA
AGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCGGCATTTGACGCGGA
GGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGATTGCCACTCGCCGG
GACCTGCTCGACCTCAAGACCGAGTTGAGCGAGAAACTATTCAGCAGCAC
CATGCGTTTTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAG
ATCTTATGTCCGTGCGGTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCA
AAGGCCAAGCTGAAGCGATCCTACGGGTAGTCGTCGCGGGAATGGAGGAG
TCCACGCTGAAAAGCACAGCAATGACTCCGGCCTCTGTCCTCGGCCCGGG
TAAGGCGGTCGTGTCCTTTGACACCTACAAGATGCTGACGGAGGCGCAGC
ATTGCGTTGGTCGTCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCGTC
CAATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTT
TGCCCGCTTGATGATGTGAGTCCGAATTTAAGGCATCCATCCATGCCGAG
TATCAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCGA
CCGGCATTTGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTGC
AGATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGTTGAGCGAG
AAACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAGCAA
GGAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCGCCGAGTCTCTGCA
AGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTCG
TCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGACTCCGGCC
TCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGAT
GCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGAACGAGATTGCCCAGG
TGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACGCTTCTGTCCCTCTTG
ACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTGAGTCCGAATTTAAGG
CATCCATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGTG
GAAAAGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAACA
GCGAGTATCCGTGCTGCAGATTGCCACTCGCCGGGACCTGCTCGACCTCA
AGACCGAGTTGAGCGAGAAACTATTCAGCAGCACCATGCGTTTTGACGTT
GCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATCTTATGTCCGTGCG
GTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGC
GATCCTACGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCA
CAGCAATGACTCCGGCCTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCC
TTTGACACCTACAAGATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCA
GAACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGA
CGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATG
TGAGTCCGAATTTAAGGCATCCATCCATGCCGAGTATCAGAAGCTTGAGA
AAGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCGGCATTTGACGCGG
AGGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGATTGCCACTCGCCG
GGACCTGCTCGACCTCAAGACCGAGTTGAGCGAGAAACTATTCAGCAGCA
CCATGCGTTTTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAA
GATCTTATGTCCGTGCGGTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGC
AAAGGCCAAGCTGAAGCGATCCTACGGGTAGTCGTCGCGGGAATGGAGGA
GTCCACGCTGAAAAGCACAGCAATGACTCCGGCCTCTGTCCTCGGCCCGG
GTAAGGCGGTCGTGTCCTTTGACACCTACAAGATGCTGACGGAGGCGCAG
CATTGCGTTGGTCGTCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCGT
CCAATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGT
TTGCCCGCTTGATGATGTGAGTCCGAATTTAAGGCATCCATCCATGCCGA
GTATCAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCG
ACCGGCATTTGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTG
CAGATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGTTGAGCGA
GAAACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAGCA
AGGAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCGCCGAGTCTCTGC
AAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTC
GTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGACTCCGGC
CTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGA
TGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGAACGAGATTGCCCAG
GTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACGCTTCTGTCCCTCTT
GACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTGAGTCCGAATTTAAG
GCATCCATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGT
GGAAAAGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAAC
AGCGAGTATCCGTGCTGCAGATTGCCACTCGCCGGGACCTGCTCGACCTC
AAGACCGAGTTGAGCGAGAAACTATTCAGCAGCACCATGCGTTTTGACGT
TGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATCTTATGTCCGTGC
GGTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAG
CGATCCTACGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGC
ACAGCAATGACTCCGGCCTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTC
CTTTGACACCTACAAGATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTC
AG
back to top
Synonyms
Publications