jgi.p|Nanoce1779_2|633855, mRNA_9884 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633855
Unique Name	mRNA_9884
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	815
Alignment location	scaffold_45:144505..146798 -

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Properties


Property Name	Value
TranscriptId	633941
Track	FilteredModels2
ProteinId	633855

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:144505..146798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633855	gene_9884	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633855	mRNA_9884-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9884	CDS_9884	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:144505..146798-
coding sequence from alignment at scaffold_45:144505..146798-

mRNA sequence

>mRNA_9884 ID=mRNA_9884|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
ATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGACTCCGGCCTCTGT
CCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGGTCGCCG
AGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTA
CGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAAT
GATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGTTGAGCGAGA
AACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAGCAAG
GAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCCGAATTTAAGGCATC
CATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAA
AGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAACAGCGA
GTATCCGTGCTGCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCA
ATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTG
CCCGCTTGATGATGTGAGGAGGGAGGGAGGGAAGAGGCGAGGAGAAGTGT
AAATGAAATAAGGGTAAGATATTTGCGGGGCTGAGTGCTTCTTATTACCA
GCGTGTTGCGAGCTGCATGCTCCAGCATAGGGAAAGAGGGCAAAGACAGA
TGCAAAAGGCGAAACGTGTAAAGAGATGAGGTTGTCGAATGAAGGTGTCC
ATCGATGGTATTGTAATGGTCATTGTCAAACCTGAAAGATTTAAATAATA
ACCCAGTAAATTATG

protein sequence of jgi.p|Nanoce1779_2|633855

>mRNA_9884-protein ID=mRNA_9884-protein|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MLTEAQHCVGRQTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEAIL
RVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSK
EVIEKDLMSVRSEFKASIHAEYQKLEKEMSNVEKVLTDRHLTRRELMEQR
VSVLQNEIAQVEKRVVQYGAGTLLSLLTVGLGFARLMM*

mRNA from alignment at scaffold_45:144505..146798-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9884 ID=mRNA_9884|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_45:144505..146798- (Nannochloropsis oceanica)
ATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGGTGTGTCTGTGATT
CGCTAATATAACGGTAGAAAACAGGGAGGTGGCTGAAGAGGATGAGGACG
AGGGAGGGAGGTCAGGGAGGTCGAAGAGGCAAAAGTGTGTTTGGCTGGCT
TGTTGAGGGCGGAGTAGCACTTTTCTTGCATGCACACATCCCCTTCAGAT
GTGAACGCTTGTCTCTCCCCTGGGGTTGTGTCGTCTGTGGAGACTGTCTG
TGTGTACTCAGAAGGGGTCAGGGTGCTTACTCTCGCCCAACTTCCTTGAA
CGCCGCAACGGACCAACAAGCCCATGTGTCCCATCCAGCCTACAAGGACC
TCAGACACAGCTGTTGAGGCGAATATTCGATAATCGACTGCAGCAGGATG
CACAACATGCACAGGAGTAGCCGCCTCAGGAGCTGCAGGCCTTGCAGTTG
TAGCTGAGACCAATCCGACTCATGCCCTCCCTCACCCCATCTCACACCCC
AGTGTTGTACAACTCCTACCTCCCTCTCGGAGACGTCCCACCACCCTTCG
TATACCCTGATTCCACCTGGATACACGGCCCGATTCAGGCAAAATGCTTA
TCTCCGGCCGCCGGTTGCTTCAGTCGACTGCTTGCCGTCAATGCCGCCTC
GTTTCCTCCTCCTCCCCCACGCCTACCTCTACACCTCCTTCCTCTACGCC
CTCCTCGTCTGGCGTTGCCCCCCCGCTCTTCTCCACCCCCTTCGCCTCTT
CTTCCTCATCGAGCCCCTCCTTATCAACTGTGCAGACTCCGGCCTCTGTC
CTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGGTGAGGAA
GAGACGATACATGCCTTTATCATCTTCATACCTTCCCCTTCCCTACCTTT
CCACCTTACTTCCTACATTCTGCCTTGACAGTCTTGAGCGATACGAATGC
TTGCTTCTTTAATGCCTTATCCTCCCTAATTGTATTCGATCTTGTCTCCT
GTCCTCCCTCCTCTCATGCGCCGCCCTAGGTCGCCGAGTCTCTGCAAGAA
GCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTCGTCGC
GGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGGTACGTAGGGGTG
AACGAGGAAAGGATTTACAGGGCAGGAGCGAGGGAGAGGAAACGGTCTCA
AGTCGGCTTTAAATGAAGAGCCACAACCTCCATGGCACTGTGCACAGCCG
ACCCTAAGTCGACCAGGCGATTGTGACACTCAAAACCTTGACATCTAAAT
CCATCACACATGATTTTGAATGCGTAGATTGCCACTCGCCGGGACCTGCT
CGACCTCAAGACCGAGTTGAGCGAGAAACTATTCAGCAGCACCATGCGTT
TTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATCTTATG
TCCGTGCGGTACGAAGAGCAGCAAGAGCAAGGGAGAGAGAGGAGGAAAAT
GGCATTGAGAAGAAGGGTCGCCTGCGTGCATTTACACGGACTTTGTTGGT
TGAAAGAGAATAAGGACTCGGATATACATATCGTAACTTGTTCAAGAGGA
CTCCACCAATGACGTGCCTCCCTCCTTTTTTCCCACTCTCCCTCCACACC
TCCCTGCTCAGGTCCGAATTTAAGGCATCCATCCATGCCGAGTATCAGAA
GCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCGGCATT
TGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGGTCCGG
AGGAAGGCGGGGAAAAGGGATGGAGGAAAGGGAGGCCTTCAATTCTACAC
CATTGATCTATGGCTCATGTTTGCATGATATTATGCGTCACTCAAATGCT
CTTCATCCCTCTTTCCATCCCTTCCTACTCCCCCTCTCGCACAGAACGAG
ATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACGCTTCT
GTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTGAGGAG
GGAGGGAGGGAAGAGGCGAGGAGAAGTGTAAATGAAATAAGGGTAAGATA
TTTGCGGGGCTGAGTGCTTCTTATTACCAGCGTGTTGCGAGCTGCATGCT
CCAGCATAGGGAAAGAGGGCAAAGACAGATGCAAAAGGCGAAACGTGTAA
AGAGATGAGGTTGTCGAATGAAGGTGTCCATCGATGGTATTGTAATGGTC
ATTGTCAAACCTGAAAGATTTAAATAATAACCCAGTAAATTATG

Coding sequence (CDS) from alignment at scaffold_45:144505..146798-

>mRNA_9884 ID=mRNA_9884|Name=jgi.p|Nanoce1779_2|633855|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_45:144505..146798- (Nannochloropsis oceanica)
AACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGAC
GCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGT
GAGTCCGAATTTAAGGCATCCATCCATGCCGAGTATCAGAAGCTTGAGAA
AGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCGGCATTTGACGCGGA
GGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGATTGCCACTCGCCGG
GACCTGCTCGACCTCAAGACCGAGTTGAGCGAGAAACTATTCAGCAGCAC
CATGCGTTTTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAG
ATCTTATGTCCGTGCGGTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCA
AAGGCCAAGCTGAAGCGATCCTACGGGTAGTCGTCGCGGGAATGGAGGAG
TCCACGCTGAAAAGCACAGCAATGACTCCGGCCTCTGTCCTCGGCCCGGG
TAAGGCGGTCGTGTCCTTTGACACCTACAAGATGCTGACGGAGGCGCAGC
ATTGCGTTGGTCGTCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCGTC
CAATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTT
TGCCCGCTTGATGATGTGAGTCCGAATTTAAGGCATCCATCCATGCCGAG
TATCAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCGA
CCGGCATTTGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTGC
AGATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGTTGAGCGAG
AAACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAGCAA
GGAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCGCCGAGTCTCTGCA
AGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTCG
TCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGACTCCGGCC
TCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGAT
GCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGAACGAGATTGCCCAGG
TGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACGCTTCTGTCCCTCTTG
ACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTGAGTCCGAATTTAAGG
CATCCATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGTG
GAAAAGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAACA
GCGAGTATCCGTGCTGCAGATTGCCACTCGCCGGGACCTGCTCGACCTCA
AGACCGAGTTGAGCGAGAAACTATTCAGCAGCACCATGCGTTTTGACGTT
GCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATCTTATGTCCGTGCG
GTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGC
GATCCTACGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCA
CAGCAATGACTCCGGCCTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCC
TTTGACACCTACAAGATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCA
GAACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGA
CGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATG
TGAGTCCGAATTTAAGGCATCCATCCATGCCGAGTATCAGAAGCTTGAGA
AAGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCGGCATTTGACGCGG
AGGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGATTGCCACTCGCCG
GGACCTGCTCGACCTCAAGACCGAGTTGAGCGAGAAACTATTCAGCAGCA
CCATGCGTTTTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAA
GATCTTATGTCCGTGCGGTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGC
AAAGGCCAAGCTGAAGCGATCCTACGGGTAGTCGTCGCGGGAATGGAGGA
GTCCACGCTGAAAAGCACAGCAATGACTCCGGCCTCTGTCCTCGGCCCGG
GTAAGGCGGTCGTGTCCTTTGACACCTACAAGATGCTGACGGAGGCGCAG
CATTGCGTTGGTCGTCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCGT
CCAATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGGT
TTGCCCGCTTGATGATGTGAGTCCGAATTTAAGGCATCCATCCATGCCGA
GTATCAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCG
ACCGGCATTTGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTG
CAGATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGTTGAGCGA
GAAACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAGCA
AGGAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCGCCGAGTCTCTGC
AAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTC
GTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGACTCCGGC
CTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGA
TGCTGACGGAGGCGCAGCATTGCGTTGGTCGTCAGAACGAGATTGCCCAG
GTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACGCTTCTGTCCCTCTT
GACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTGAGTCCGAATTTAAG
GCATCCATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGT
GGAAAAGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAAC
AGCGAGTATCCGTGCTGCAGATTGCCACTCGCCGGGACCTGCTCGACCTC
AAGACCGAGTTGAGCGAGAAACTATTCAGCAGCACCATGCGTTTTGACGT
TGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATCTTATGTCCGTGC
GGTCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAG
CGATCCTACGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGC
ACAGCAATGACTCCGGCCTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTC
CTTTGACACCTACAAGATGCTGACGGAGGCGCAGCATTGCGTTGGTCGTC
AG

Synonyms

Publications