jgi.p|Nanoce1779_2|315431, mRNA_9880 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|315431
Unique NamemRNA_9880
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length678
Alignment locationscaffold_45:132302..133219 +

Link to JBrowse

Properties
Property NameValue
TranscriptId315517
TrackFilteredModels2
ProteinId315431
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:132302..133219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|315431gene_9880Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|315431mRNA_9880-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9880CDS_9880Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9880 ID=mRNA_9880|Name=jgi.p|Nanoce1779_2|315431|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
CTGTACACCACAACTCTCAAGCACACTGATAGGAGGAGTCTCAAGTAAGT
ATCCTTGGACATGCAGCAGCAACAACAGCAGCTGCCACAGCAGCACCAAC
AGCAAGCGCAGCCGCAAGTAAACATGGAGGAGGCATGTGCACTGTTTCGT
CAGGGGGTGACATCGGTGTTCAGGCAGTGGATGGTCCTTCACCTCGCCGT
CTCAAACAACTGGGGCGGGGGAGACAGCTACCGAAAAGCTACCATCCTCC
TCGAGGAGACATTACGCCTCTTTTTACCCTCCGCCCTCCCTCGCGCTGCG
CATCGTCCTAAGAAAATTCCTTCCGCTGATGACCTGGAGGAGAAGCTGGG
AGACTACATAGAAGAGGTAGACCTTTCCTTCCTCCCTTCCTCCCTCCCTC
TCTCCCTCTCTAGCCCCCTCCCTCGCGCCTCATCATTTCTTTATTTGTTT
GGTATCTGCGAGAATCGTCTAGAGAATACCTGTTCCAATCTTTGCAACCT
CCCTCCTTCCCTCCTTCCCTCCATCCCTCCTTTTCTCAGCAATTCGGGAC
ACTTATTGAAGACGGTAGTTTGGAAGAAGTGAGTGCCTTGGTGTGCAGAC
TCTGGGAAGACTGCAAACAGGGAGGGAAGGAGGGTGTGAGGGAGGTATGT
GGAAAGGAAGCGGAGGTGTTACGGTTGC
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protein sequence of jgi.p|Nanoce1779_2|315431

>mRNA_9880-protein ID=mRNA_9880-protein|Name=jgi.p|Nanoce1779_2|315431|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MQQQQQQLPQQHQQQAQPQVNMEEACALFRQGVTSVFRQWMVLHLAVSNN
WGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYI
EEVDLSFLPSSLPLSLSSPLPRASSFLYLFGICENRLENTCSNLCNLPPS
LLPSIPPFLSNSGHLLKTVVWKK*
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mRNA from alignment at scaffold_45:132302..133219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9880 ID=mRNA_9880|Name=jgi.p|Nanoce1779_2|315431|organism=Nannochloropsis oceanica|type=mRNA|length=918bp|location=Sequence derived from alignment at scaffold_45:132302..133219+ (Nannochloropsis oceanica)
CTGTACACCACAACTCTCAAGCACACTGATAGGAGGAGTCTCAAGTAAGT
ATCCTTGGACATGCAGCAGCAACAACAGCAGCTGCCACAGCAGCACCAAC
AGCAAGCGCAGCCGCAAGTAAACATGGAGGAGGCATGTGCACTGTTTCGT
CAGGGGGTGACATCGGTGTTCAGGCAGGTGAGAAGGGAGGGAGGGATGGA
AGGCGGGGAGGAAGGGCGGAACGCTTGATATGGTCCGCAGATCGCTTCGC
ATATACGGCGTGATGTAGTACCGCCACCCTACGTCAAAAAAACGGTACCT
TCCGCTTCTCGCTTTTTGGTACAGTGTGTATTTTGCTCCTTTGCTTGCAT
GACCCGACCCAAACCTCCCTCCTTCCCTCCCTCCTTCCCCCCCCCCCTCC
CTCCCTCCCTCCCTTAGTGGATGGTCCTTCACCTCGCCGTCTCAAACAAC
TGGGGCGGGGGAGACAGCTACCGAAAAGCTACCATCCTCCTCGAGGAGAC
ATTACGCCTCTTTTTACCCTCCGCCCTCCCTCGCGCTGCGCATCGTCCTA
AGAAAATTCCTTCCGCTGATGACCTGGAGGAGAAGCTGGGAGACTACATA
GAAGAGGTAGACCTTTCCTTCCTCCCTTCCTCCCTCCCTCTCTCCCTCTC
TAGCCCCCTCCCTCGCGCCTCATCATTTCTTTATTTGTTTGGTATCTGCG
AGAATCGTCTAGAGAATACCTGTTCCAATCTTTGCAACCTCCCTCCTTCC
CTCCTTCCCTCCATCCCTCCTTTTCTCAGCAATTCGGGACACTTATTGAA
GACGGTAGTTTGGAAGAAGTGAGTGCCTTGGTGTGCAGACTCTGGGAAGA
CTGCAAACAGGGAGGGAAGGAGGGTGTGAGGGAGGTATGTGGAAAGGAAG
CGGAGGTGTTACGGTTGC
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Coding sequence (CDS) from alignment at scaffold_45:132302..133219+

>mRNA_9880 ID=mRNA_9880|Name=jgi.p|Nanoce1779_2|315431|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_45:132302..133219+ (Nannochloropsis oceanica)
ATGCAGCAGCAACAACAGCAGCTGCCACAGCAGCACCAACAGCAAGCGCA
GCCGCAAGTAAACATGGAGGAGGCATGTGCACTGTTTCGTCAGGGGGTGA
CATCGGTGTTCAGGCAGTGGATGGTCCTTCACCTCGCCGTCTCAAACAAC
TGGGGCGGGGGAGACAGCTACCGAAAAGCTACCATCCTCCTCGAGGAGAC
ATTACGCCTCTTTTTACCCTCCGCCCTCCCTCGCGCTGCGCATCGTCCTA
AGAAAATTCCTTCCGCTGATGACCTGGAGGAGAAGCTGGGAGACTACATA
GAAGAGGTAGACCTTTCCTTCCTCCCTTCCTCCCTCCCTCTCTCCCTCTC
TAGCCCCCTCCCTCGCGCCTCATCATTTCTTTATTTGTTTGGTATCTGCG
AGAATCGTCTAGAGAATACCTGTTCCAATCTTTGCAACCTCCCTCCTTCC
CTCCTTCCCTCCATCCCTCCTTTTCTCAGCAATTCGGGACACTTATTGAA
GACGGTAGTTTGGAAGAAGTGAATGCAGCAGCAACAACAGCAGCTGCCAC
AGCAGCACCAACAGCAAGCGCAGCCGCAAGTAAACATGGAGGAGGCATGT
GCACTGTTTCGTCAGGGGGTGACATCGGTGTTCAGGCAGTGGATGGTCCT
TCACCTCGCCGTCTCAAACAACTGGGGCGGGGGAGACAGCTACCGAAAAG
CTACCATCCTCCTCGAGGAGACATTACGCCTCTTTTTACCCTCCGCCCTC
CCTCGCGCTGCGCATCGTCCTAAGAAAATTCCTTCCGCTGATGACCTGGA
GGAGAAGCTGGGAGACTACATAGAAGAGGTAGACCTTTCCTTCCTCCCTT
CCTCCCTCCCTCTCTCCCTCTCTAGCCCCCTCCCTCGCGCCTCATCATTT
CTTTATTTGTTTGGTATCTGCGAGAATCGTCTAGAGAATACCTGTTCCAA
TCTTTGCAACCTCCCTCCTTCCCTCCTTCCCTCCATCCCTCCTTTTCTCA
GCAATTCGGGACACTTATTGAAGACGGTAGTTTGGAAGAAGTGA
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Synonyms
Publications