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Properties
| Property Name | Value |
|---|
| TranscriptId | 315410 |
| Track | FilteredModels2 |
| ProteinId | 315324 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_45 | supercontig | scaffold_45:127711..130437 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9879 ID=mRNA_9879|Name=jgi.p|Nanoce1779_2|315324|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
ATCTCCAGCGCAAGCAAAGCTGCTGCCGGCGGATCCTCAGGTCTGAGCGC
CACGGGTGGGCTGCTGAACGAGCTGCTGGGGGGTGGAAGCAGCAGTGGAG
GAGACAGCTTAATTGGTGCGCCCGCCGAGAAGGCCAGTGTGGACACAACC
GTTACACCTGTGGGCAAGCCGTTTGTGCCGTCGTTAGGGGATGGAGGGAA
TGCGATGGGCTTGCCCACGGTGGGCGCTGCGGTGAAGAAAAGCGGGGCAG
CAGAGACGTGTGGTGCTCCCTTGTCAATTTCAGTGGAAAGTTTGACTGAG
TATCGCGTATACGTCGATGGAAATCAGGTCGGTTACAGTAATGGCGTGCA
GATGCAGCGCTACGAGACAACCTACGGGTCATCTGGCGCCGTCACGGTGG
CCATTGAAGCCACGCGCGACAGGGACATGTCTAACTTTGCATCCTCCCTC
CTTAGCCGTGGACGGGCTGGCTGTTAATGTAACGGTTTGTGGGGAGACGT
TTATTTCGGATCAGGACTGGGTGTGCACCGACACCCGCCCCTGGACCACC
ACATGGCGCCTGGGGTCTTACACACCCTTCCAATGGATGCAAGCGGCCCT
CGTGCGCGATGCGGCAAAGCTCGTCGATGGCTCCACCTCCTTCGCTATTT
GGTCCAAGCCCAGCTGTGACTCCAAACCAGGCGTGCCTGAGCAAGCCTTT
TGCCGCCGCACCCTCAAGCCCACGACCCCCTGCCCCAAATACCTTCCATG
CTACACCGAACAGACCACGTCCCCCCCCGACACGGGCTGTTTAACGGGCT
GCGTTATGGAAACCGTTAGCAAGGACAAATGCGCCACCATCGCCCATCAG
CTCACTGGAGGATGCGGCTCCTGTTCTTCGGCCTTTATGACGTACTACAA
GCAGTATTGCAAAACGCAAGGATGCTCGGCTGAGCAGTGCCAGGTATGCC
GTCGGAGAACGACGGCTTCACGCCCAACAGTGCGTGCCTCGACGGTTGCG
GCTTGAAAGCCTTCAACTCCCAATGCGAACAACAAGCACACCAGTTCCAA
AGCGGCTGCGCCTCAACCTGTGGCCCCGAGACGTTATCATTTGCCCGTGA
TAAATGCCTCTCTACCTACAAGTGCTCCCCAACCCAATGCTCTATTTTTG
CGGACAAAGGCGCGGTGGACGGTGGCTTGGCAAATCAAGTTGGAA back to topprotein sequence of jgi.p|Nanoce1779_2|315324 >mRNA_9879-protein ID=mRNA_9879-protein|Name=jgi.p|Nanoce1779_2|315324|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MEIRSVTVMACRCSATRQPTGHLAPSRWPLKPRATGTCLTLHPPSLAVDG
LAVNVTVCGETFISDQDWVCTDTRPWTTTWRLGSYTPFQWMQAALVRDAA
KLVDGSTSFAIWSKPSCDSKPGVPEQAFCRRTLKPTTPCPKYLPCYTEQT
TSPPDTGCLTGCVMETVSKDKCATIAHQLTGGCGSCSSAFMTYYKQYCKT
QGCSAEQCQVCRRRTTASRPTVRASTVAA* back to topmRNA from alignment at scaffold_45:127711..130437+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9879 ID=mRNA_9879|Name=jgi.p|Nanoce1779_2|315324|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at scaffold_45:127711..130437+ (Nannochloropsis oceanica)
ATCTCCAGCGCAAGCAAAGCTGCTGCCGGCGGATCCTCAGGTCTGAGCGC
CACGGGTGGGCTGCTGAACGAGCTGCTGGGGGGTGGAAGCAGCAGTGGAG
GAGACAGCTTAATTGGTGCGCCCGCCGAGAAGGCCAGTGTGGACACAACC
GTTACACCTGTGGGCAAGCCGTTTGTGCCGTCGTTAGGGGATGGAGGGAA
TGCGATGGGCTTGCCCACGGTGGGCGCTGCGGTGAAGAAAAGCGGGGCAG
CAGAGACGTGTGGTGCTCCCTTGTCAATTTCAGTGGAAAGTTTGACTGAG
TATCGCGTATACGTCGATGGAAATCAGGTGCGTTCATTCTTCCTCCCTCA
CTCCCTAAAGCGTGTGTGGTATGGGTAGCTACAGCAGTAGCAACAGTAGT
AGTAGTTGTTGCTGTTGTCGATGTTGTTGTTGGACCAGCAGTAGCGGTAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGCAGCAGTAGCAGGGGAA
GAAGTGTCTCGAACCAATAAAACTTCCTTTCTTCCCTCTCTCTCGGGTCC
TCCCTCTCTCTCTCATGACTTAAATGTTTTGAGCTCAACCATTCCCAGCA
CCATCCATGTCACTCACCTCTTCCTCCACCCCCCCTCCCTCCCCCCCTCC
TTCAACGCTCTCAGGTCGGTTACAGTAATGGCGTGCAGATGCAGCGCTAC
GAGACAACCTACGGGTCATCTGGCGCCGTCACGGTGGCCATTGAAGCCAC
GCGCGACAGGGACATGTCTAACTTTGCATGTAGGGAGGGAGGGAAGGAGG
GAAAGACGGAGGGAGGGAGGGAGGGAAAGACGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGACTTGCGGTCGTTTGAATGATGGACTGAGAGAGA
GCGGGGCATACACAATGCATTTCGCACCAGCTCACTCACCTTCCCTCCCT
CCCTCCCTCCCTCCTTAGCCGTGGACGGGCTGGCTGTTAATGTAACGGTT
TGTGGGGAGACGTTTATTTCGGATCAGGACTGGGTGTGCACCGACACCCG
CCCCTGGACCACCACATGGCGCCTGGGGTCTTACACACCCTTCCAATGGA
TGCAAGCGGCCCTCGTGCGCGATGCGGCAAAGGTAGGGGTTAATTAATTC
ATCTGTTAGCTATCAATTTAAATATTTCGTATTTAAATTTTTGAATTGAC
TTATTTTTAATGATGGTGCTTGTTTGTTTGATGGGGGGGGGTTGGGGGTG
GAGCTTTCCCTCCTTCCTTCTTTCCCTCCCTCCCTCCCCGCTCCTGATAT
CTTGAAACTGACCACGCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCCAGCTCGTCGATGGCTCCACCTCCTTCGCTATTTGGTCCA
AGCCCAGCTGTGACTCCAAACCAGGCGTGCCTGAGCAAGCCTTTTGCCGC
CGCACCCTCAAGCCCACGACCCCCTGCCCCAAATACCTTCCATGCTACAC
CGAACAGGCACGGCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTTTCTC
CCCGTTCTGGGTCGTTGAAGAGCTATGCCATCTTTTCCTCCTCCCCTTCC
CTGTCGCATTCATACACATAATAATGATAATAATAACAATAAACAAGATT
GTCAACTCAACCAACAAGCACTCCCCCTACCTCTCCCCCACCCTCCACCT
AGACCACGTCCCCCCCCGACACGGGCTGTTTAACGGGCTGCGTTATGGAA
ACCGTTAGCAAGGACAAATGCGCCACCATCGCCCATCAGCTCACTGGAGG
ATGCGGCTCCTGTTCTTCGGCCTTTATGACGTACTACAAGCAGTATTGCA
AAACGCAAGGATGCTCGGCTGAGCAGTGCCAGGTGCGTGCGTGCAATTTA
ATTGCCCTCCTTCCCTCCCTTTTTCCCTCCCTCCCTCCGTTGGCTCTGTT
TCTCGAATGATGGATGGCGGTCTCAGATGGTCGCACTTTCTCGAAACGGA
CTGTTGCATCCTTCCATCCCTCCCCCCTTCCCTCCTTCCCTCCTTCCCTC
CTTCCCTCCTTCCCTCCTTCCCTCCTTCCGAGATCTACTCGTCTCACCCT
TCACATGATTCCAACACAAATCTAATCTCCTATCCTCCCTCCCCCCCTCC
CTCCCTCCCTCCCTTCCTCTTTCAGATGCCGTCGGAGAACGACGGCTTCA
CGCCCAACAGTGCGTGCCTCGACGGTTGCGGCTTGAAAGCCTTCAACTCC
CAATGCGAACAACAAGCACACCAGTTCCAAAGCGGTAAGCCTCCTCCCTC
CCTCCCTCCCTCTTTCTTTACCCATGTGCTCCCTCCCTCCCTCCCTTTCT
CCCTCCCTCCCTCCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
TTCTTTACCCATGTGCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTTTCTTTACCCATGTACTTCCTCCCTCCCTCCTT
CCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCAGGCTGCGCCTCAACC
TGTGGCCCCGAGACGTTATCATTTGCCCGTGATAAATGCCTCTCTACCTA
CAAGTGCTCCCCAACCCAATGCTCTATTTTTGCGGACAAAGGCGCGGTGG
ACGGTGGCTTGGCAAATCAAGTTGGAA back to topCoding sequence (CDS) from alignment at scaffold_45:127711..130437+ >mRNA_9879 ID=mRNA_9879|Name=jgi.p|Nanoce1779_2|315324|organism=Nannochloropsis oceanica|type=CDS|length=4140bp|location=Sequence derived from alignment at scaffold_45:127711..130437+ (Nannochloropsis oceanica)
ATGGAAATCAGGTCGGTTACAGTAATGGCGTGCAGATGCAGCGCTACGAG
ACAACCTACGGGTCATCTGGCGCCGTCACGGTGGCCATTGAAGCCACGCG
CGACAGGGACATGTCTAACTTTGCATCCTCCCTCCTTAGCCGTGGACGGG
CTGGCTGTTAATGTAACGGTTTGTGGGGAGACGTTTATTTCGGATCAGGA
CTGGGTGTGCACCGACACCCGCCCCTGGACCACCACATGGCGCCTGGGGT
CTTACACACCCTTCCAATGGATGCAAGCGGCCCTCGTGCGCGATGCGGCA
AAGCTCGTCGATGGCTCCACCTCCTTCGCTATTTGGTCCAAGCCCAGCTG
TGACTCCAAACCAGGCGTGCCTGAGCAAGCCTTTTGCCGCCGCACCCTCA
AGCCCACGACCCCCTGCCCCAAATACCTTCCATGCTACACCGAACAGACC
ACGTCCCCCCCCGACACGGGCTGTTTAACGGGCTGCGTTATGGAAACCGT
TAGCAAGGACAAATGCGCCACCATCGCCCATCAGCTCACTGGAGGATGCG
GCTCCTGTTCTTCGGCCTTTATGACGTACTACAAGCAGTATTGCAAAACG
CAAGGATGCTCGGCTGAGCAGTGCCAGGTATGCCGTCGGAGAACGACGGC
TTCACGCCCAACAGTGCGTGCCTCGACGGTTGCGGCTTGAATGGAAATCA
GGTCGGTTACAGTAATGGCGTGCAGATGCAGCGCTACGAGACAACCTACG
GGTCATCTGGCGCCGTCACGGTGGCCATTGAAGCCACGCGCGACAGGGAC
ATGTCTAACTTTGCATCCTCCCTCCTTAGCCGTGGACGGGCTGGCTGTTA
ATGTAACGGTTTGTGGGGAGACGTTTATTTCGGATCAGGACTGGGTGTGC
ACCGACACCCGCCCCTGGACCACCACATGGCGCCTGGGGTCTTACACACC
CTTCCAATGGATGCAAGCGGCCCTCGTGCGCGATGCGGCAAAGCTCGTCG
ATGGCTCCACCTCCTTCGCTATTTGGTCCAAGCCCAGCTGTGACTCCAAA
CCAGGCGTGCCTGAGCAAGCCTTTTGCCGCCGCACCCTCAAGCCCACGAC
CCCCTGCCCCAAATACCTTCCATGCTACACCGAACAGACCACGTCCCCCC
CCGACACGGGCTGTTTAACGGGCTGCGTTATGGAAACCGTTAGCAAGGAC
AAATGCGCCACCATCGCCCATCAGCTCACTGGAGGATGCGGCTCCTGTTC
TTCGGCCTTTATGACGTACTACAAGCAGTATTGCAAAACGCAAGGATGCT
CGGCTGAGCAGTGCCAGGTATGCCGTCGGAGAACGACGGCTTCACGCCCA
ACAGTGCGTGCCTCGACGGTTGCGGCTTGAATGGAAATCAGGTCGGTTAC
AGTAATGGCGTGCAGATGCAGCGCTACGAGACAACCTACGGGTCATCTGG
CGCCGTCACGGTGGCCATTGAAGCCACGCGCGACAGGGACATGTCTAACT
TTGCATCCTCCCTCCTTAGCCGTGGACGGGCTGGCTGTTAATGTAACGGT
TTGTGGGGAGACGTTTATTTCGGATCAGGACTGGGTGTGCACCGACACCC
GCCCCTGGACCACCACATGGCGCCTGGGGTCTTACACACCCTTCCAATGG
ATGCAAGCGGCCCTCGTGCGCGATGCGGCAAAGCTCGTCGATGGCTCCAC
CTCCTTCGCTATTTGGTCCAAGCCCAGCTGTGACTCCAAACCAGGCGTGC
CTGAGCAAGCCTTTTGCCGCCGCACCCTCAAGCCCACGACCCCCTGCCCC
AAATACCTTCCATGCTACACCGAACAGACCACGTCCCCCCCCGACACGGG
CTGTTTAACGGGCTGCGTTATGGAAACCGTTAGCAAGGACAAATGCGCCA
CCATCGCCCATCAGCTCACTGGAGGATGCGGCTCCTGTTCTTCGGCCTTT
ATGACGTACTACAAGCAGTATTGCAAAACGCAAGGATGCTCGGCTGAGCA
GTGCCAGGTATGCCGTCGGAGAACGACGGCTTCACGCCCAACAGTGCGTG
CCTCGACGGTTGCGGCTTGAATGGAAATCAGGTCGGTTACAGTAATGGCG
TGCAGATGCAGCGCTACGAGACAACCTACGGGTCATCTGGCGCCGTCACG
GTGGCCATTGAAGCCACGCGCGACAGGGACATGTCTAACTTTGCATCCTC
CCTCCTTAGCCGTGGACGGGCTGGCTGTTAATGTAACGGTTTGTGGGGAG
ACGTTTATTTCGGATCAGGACTGGGTGTGCACCGACACCCGCCCCTGGAC
CACCACATGGCGCCTGGGGTCTTACACACCCTTCCAATGGATGCAAGCGG
CCCTCGTGCGCGATGCGGCAAAGCTCGTCGATGGCTCCACCTCCTTCGCT
ATTTGGTCCAAGCCCAGCTGTGACTCCAAACCAGGCGTGCCTGAGCAAGC
CTTTTGCCGCCGCACCCTCAAGCCCACGACCCCCTGCCCCAAATACCTTC
CATGCTACACCGAACAGACCACGTCCCCCCCCGACACGGGCTGTTTAACG
GGCTGCGTTATGGAAACCGTTAGCAAGGACAAATGCGCCACCATCGCCCA
TCAGCTCACTGGAGGATGCGGCTCCTGTTCTTCGGCCTTTATGACGTACT
ACAAGCAGTATTGCAAAACGCAAGGATGCTCGGCTGAGCAGTGCCAGGTA
TGCCGTCGGAGAACGACGGCTTCACGCCCAACAGTGCGTGCCTCGACGGT
TGCGGCTTGAATGGAAATCAGGTCGGTTACAGTAATGGCGTGCAGATGCA
GCGCTACGAGACAACCTACGGGTCATCTGGCGCCGTCACGGTGGCCATTG
AAGCCACGCGCGACAGGGACATGTCTAACTTTGCATCCTCCCTCCTTAGC
CGTGGACGGGCTGGCTGTTAATGTAACGGTTTGTGGGGAGACGTTTATTT
CGGATCAGGACTGGGTGTGCACCGACACCCGCCCCTGGACCACCACATGG
CGCCTGGGGTCTTACACACCCTTCCAATGGATGCAAGCGGCCCTCGTGCG
CGATGCGGCAAAGCTCGTCGATGGCTCCACCTCCTTCGCTATTTGGTCCA
AGCCCAGCTGTGACTCCAAACCAGGCGTGCCTGAGCAAGCCTTTTGCCGC
CGCACCCTCAAGCCCACGACCCCCTGCCCCAAATACCTTCCATGCTACAC
CGAACAGACCACGTCCCCCCCCGACACGGGCTGTTTAACGGGCTGCGTTA
TGGAAACCGTTAGCAAGGACAAATGCGCCACCATCGCCCATCAGCTCACT
GGAGGATGCGGCTCCTGTTCTTCGGCCTTTATGACGTACTACAAGCAGTA
TTGCAAAACGCAAGGATGCTCGGCTGAGCAGTGCCAGGTATGCCGTCGGA
GAACGACGGCTTCACGCCCAACAGTGCGTGCCTCGACGGTTGCGGCTTGA
ATGGAAATCAGGTCGGTTACAGTAATGGCGTGCAGATGCAGCGCTACGAG
ACAACCTACGGGTCATCTGGCGCCGTCACGGTGGCCATTGAAGCCACGCG
CGACAGGGACATGTCTAACTTTGCATCCTCCCTCCTTAGCCGTGGACGGG
CTGGCTGTTAATGTAACGGTTTGTGGGGAGACGTTTATTTCGGATCAGGA
CTGGGTGTGCACCGACACCCGCCCCTGGACCACCACATGGCGCCTGGGGT
CTTACACACCCTTCCAATGGATGCAAGCGGCCCTCGTGCGCGATGCGGCA
AAGCTCGTCGATGGCTCCACCTCCTTCGCTATTTGGTCCAAGCCCAGCTG
TGACTCCAAACCAGGCGTGCCTGAGCAAGCCTTTTGCCGCCGCACCCTCA
AGCCCACGACCCCCTGCCCCAAATACCTTCCATGCTACACCGAACAGACC
ACGTCCCCCCCCGACACGGGCTGTTTAACGGGCTGCGTTATGGAAACCGT
TAGCAAGGACAAATGCGCCACCATCGCCCATCAGCTCACTGGAGGATGCG
GCTCCTGTTCTTCGGCCTTTATGACGTACTACAAGCAGTATTGCAAAACG
CAAGGATGCTCGGCTGAGCAGTGCCAGGTATGCCGTCGGAGAACGACGGC
TTCACGCCCAACAGTGCGTGCCTCGACGGTTGCGGCTTGA back to top
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