jgi.p|Nanoce1779_2|609450, mRNA_9876 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609450
Unique NamemRNA_9876
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length938
Alignment locationscaffold_45:117043..118343 -

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Properties
Property NameValue
TranscriptId609536
TrackFilteredModels2
ProteinId609450
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:117043..118343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609450gene_9876Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609450mRNA_9876-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9876CDS_9876Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9876 ID=mRNA_9876|Name=jgi.p|Nanoce1779_2|609450|organism=Nannochloropsis oceanica|type=mRNA|length=938bp
AACCACAGACAGCTGCAGCAGCAGCGGCAGCAGGAGCAGCCTCAGCAGCA
ACTCCAGCACCTCAAGCCATGCGTCACCGCCATGTATCCGCATTTGCGCC
CTTGTCATACCCTCCTACCCCACCGCCACCATCGTCGCACTCCCCACGCT
CAAGCCCTTGGCCCAGCACCGCCACGGCTACCTCCGCAGCTGCCTACTTC
CTCCTCCTCTTTTCCCCGTTAAGCTCTCTCCTCCTTCCCTTATCCGCCGC
CTCTGCTTCGACCCTCTCGACCCGCACAAGCATTCTCTTTCTTGGCAGCA
GCAGCACCACTACCATCACCACCGCCATCACCACCACCTCCACCTCCACG
AACCTTATCGCCGCAGGAGCAGCTGACAAAAGCATCAGCGTCACCCCTCC
TTCGATCCTTCTCCTTCCCATCGTTAAAATCGAGTTGGCCCTCACAAATC
TCGGCCCTCTTCTCCAACCCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCT
TCTTCCTCCCCCAGCGATTGGGCTACTGCCAAGAATATTCTCTCCTCCCC
TCCCTTTACGAAAGGAGAGTTCAAACGAATCTTCAATCAGTACGCAGACA
CCATTTATCGGACTGATACCACGGACGTGATGGGAGGTCAGAGCGCGCCA
CCTGCCCCGCTACAAAGCATTCAGTATCTATACAGGAACGAGATTTTGAC
GGCTTGTGAGGAGCTACGCGATGAATTGAGCTACCTGCTCTCGGAGCAAG
GCAAGGGTCCTGAGGGCGACTGGCACGACCTGAGTGGATTAGAGGAGGCC
TATGGAAAGGCCTTGGAGAACATGCAGAAGTATTTGTCACTCGCACCGCC
AGACGACGTCGAGAGCGTCCGGAAAGCCGTGAAGCAACAATTACAATAAC
AACATAACGACGAAAGAAATAATTATAATTGATATGAA
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protein sequence of jgi.p|Nanoce1779_2|609450

>mRNA_9876-protein ID=mRNA_9876-protein|Name=jgi.p|Nanoce1779_2|609450|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MRHRHVSAFAPLSYPPTPPPPSSHSPRSSPWPSTATATSAAAYFLLLFSP
LSSLLLPLSAASASTLSTRTSILFLGSSSTTTITTAITTTSTSTNLIAAG
AADKSISVTPPSILLLPIVKIELALTNLGPLLQPPSSSSSSSPSSSSPSD
WATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQS
IQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALE
NMQKYLSLAPPDDVESVRKAVKQQLQ*
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mRNA from alignment at scaffold_45:117043..118343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9876 ID=mRNA_9876|Name=jgi.p|Nanoce1779_2|609450|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_45:117043..118343- (Nannochloropsis oceanica)
AACCACAGACAGCTGCAGCAGCAGCGGCAGCAGGAGCAGCCTCAGCAGCA
ACTCCAGCACCTCAAGCCATGCGTCACCGCCATGTATCCGCATTTGCGCC
CTTGTCATACCCTCCTACCCCACCGCCACCATCGTCGCACTCCCCACGCT
CAAGCCCTTGGCCCAGCACCGCCACGGCTACCTCCGCAGCTGCCTACTTC
CTCCTCCTCTTTTCCCCGTTAAGCTCTCTCCTCCTTCCCTTATCCGCCGC
CTCTGCTTCGACCCTCTCGACCCGCACAAGCATTCTCTTTCTTGGCAGCA
GCAGCACCACTACCATCACCACCGCCATCACCACCACCTCCACCTCCACG
AACCTTATCGCCGCAGGAGCAGCTGACAAAAGCATCAGCGTCACCCCTCC
TTCGATCCTTCTCCTTCCCATCGTTAAAATCGAGTTGGCCCTCACAAATC
TCGGCCCTCTTCTCCAACCCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCT
TCTTCCTCCCCCAGCGATTGGGCTACTGCCAAGAATATTCTCTCCTCCCC
TCCCTTTACGAAAGGAGAGTTCAAACGAATCTTCAATCAGTACGCAGACA
CCATTTATCGGACTGATACCACGGACGTGATGGGAGGTCAGAGCGCGCCA
CCTGCCCCGCTACAAAGCATTCAGGTCGGTATGGGCCTTTCCTCCCTCCC
TCCCTCACTTAAGGTCCTCACTTTTCGACTCGAGACACTCGCTGGGAAAG
AAGGGGAAAACAAGAGAAGGGAGGAAGGAGGGTCAAAGAGGGAGGGAGGG
AGGGAGGGAGGGCTTGAGGAGACGGTGGACTCTGCTCACACGTGTTTCCC
CCACCCCATAGTATCTATACAGGAACGAGATTTTGACGGCTTGTGAGGAG
CTACGCGATGAATTGAGGTGAATGTTCTCACTAAGCCCCTCCCGCCTATT
GTCTCCTTAGCCCCCCTTCCCCCTCTTCCGTCCCTCCATTGCTCACTCCC
GTTGTATACTGACTAGGCATGGTTGGTTTAGTCCTCTCTTCCCCACCCAC
TCCTACCCCCCGTTCTCCCCCTCTCCCTCCTCCATTGATATAGCTACCTG
CTCTCGGAGCAAGGCAAGGGTCCTGAGGGCGACTGGCACGACCTGAGTGG
ATTAGAGGAGGCCTATGGAAAGGCCTTGGAGAACATGCAGAAGTATTTGT
CACTCGCACCGCCAGACGACGTCGAGAGCGTCCGGAAAGCCGTGAAGCAA
CAATTACAATAACAACATAACGACGAAAGAAATAATTATAATTGATATGA
A
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Coding sequence (CDS) from alignment at scaffold_45:117043..118343-

>mRNA_9876 ID=mRNA_9876|Name=jgi.p|Nanoce1779_2|609450|organism=Nannochloropsis oceanica|type=CDS|length=2493bp|location=Sequence derived from alignment at scaffold_45:117043..118343- (Nannochloropsis oceanica)
CTACCTGCTCTCGGAGCAAGGCAAGGGTCCTGAGGGCGACTGGCACGACC
TGAGTGGATTAGAGGAGGCCTATGGAAAGGCCTTGGAGAACATGCAGAAG
TATTTGTCACTCGCACCGCCAGACGACGTCGAGAGCGTCCGGAAAGCCGT
GAAGCAACAATTACAATAATATCTATACAGGAACGAGATTTTGACGGCTT
GTGAGGAGCTACGCGATGAATTGAGATGCGTCACCGCCATGTATCCGCAT
TTGCGCCCTTGTCATACCCTCCTACCCCACCGCCACCATCGTCGCACTCC
CCACGCTCAAGCCCTTGGCCCAGCACCGCCACGGCTACCTCCGCAGCTGC
CTACTTCCTCCTCCTCTTTTCCCCGTTAAGCTCTCTCCTCCTTCCCTTAT
CCGCCGCCTCTGCTTCGACCCTCTCGACCCGCACAAGCATTCTCTTTCTT
GGCAGCAGCAGCACCACTACCATCACCACCGCCATCACCACCACCTCCAC
CTCCACGAACCTTATCGCCGCAGGAGCAGCTGACAAAAGCATCAGCGTCA
CCCCTCCTTCGATCCTTCTCCTTCCCATCGTTAAAATCGAGTTGGCCCTC
ACAAATCTCGGCCCTCTTCTCCAACCCCCTTCCTCTTCCTCCTCCTCCTC
CCCCTCTTCTTCCTCCCCCAGCGATTGGGCTACTGCCAAGAATATTCTCT
CCTCCCCTCCCTTTACGAAAGGAGAGTTCAAACGAATCTTCAATCAGTAC
GCAGACACCATTTATCGGACTGATACCACGGACGTGATGGGAGGTCAGAG
CGCGCCACCTGCCCCGCTACAAAGCATTCAGCTACCTGCTCTCGGAGCAA
GGCAAGGGTCCTGAGGGCGACTGGCACGACCTGAGTGGATTAGAGGAGGC
CTATGGAAAGGCCTTGGAGAACATGCAGAAGTATTTGTCACTCGCACCGC
CAGACGACGTCGAGAGCGTCCGGAAAGCCGTGAAGCAACAATTACAATAA
TATCTATACAGGAACGAGATTTTGACGGCTTGTGAGGAGCTACGCGATGA
ATTGAGATGCGTCACCGCCATGTATCCGCATTTGCGCCCTTGTCATACCC
TCCTACCCCACCGCCACCATCGTCGCACTCCCCACGCTCAAGCCCTTGGC
CCAGCACCGCCACGGCTACCTCCGCAGCTGCCTACTTCCTCCTCCTCTTT
TCCCCGTTAAGCTCTCTCCTCCTTCCCTTATCCGCCGCCTCTGCTTCGAC
CCTCTCGACCCGCACAAGCATTCTCTTTCTTGGCAGCAGCAGCACCACTA
CCATCACCACCGCCATCACCACCACCTCCACCTCCACGAACCTTATCGCC
GCAGGAGCAGCTGACAAAAGCATCAGCGTCACCCCTCCTTCGATCCTTCT
CCTTCCCATCGTTAAAATCGAGTTGGCCCTCACAAATCTCGGCCCTCTTC
TCCAACCCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCTTCTTCCTCCCCC
AGCGATTGGGCTACTGCCAAGAATATTCTCTCCTCCCCTCCCTTTACGAA
AGGAGAGTTCAAACGAATCTTCAATCAGTACGCAGACACCATTTATCGGA
CTGATACCACGGACGTGATGGGAGGTCAGAGCGCGCCACCTGCCCCGCTA
CAAAGCATTCAGCTACCTGCTCTCGGAGCAAGGCAAGGGTCCTGAGGGCG
ACTGGCACGACCTGAGTGGATTAGAGGAGGCCTATGGAAAGGCCTTGGAG
AACATGCAGAAGTATTTGTCACTCGCACCGCCAGACGACGTCGAGAGCGT
CCGGAAAGCCGTGAAGCAACAATTACAATAATATCTATACAGGAACGAGA
TTTTGACGGCTTGTGAGGAGCTACGCGATGAATTGAGATGCGTCACCGCC
ATGTATCCGCATTTGCGCCCTTGTCATACCCTCCTACCCCACCGCCACCA
TCGTCGCACTCCCCACGCTCAAGCCCTTGGCCCAGCACCGCCACGGCTAC
CTCCGCAGCTGCCTACTTCCTCCTCCTCTTTTCCCCGTTAAGCTCTCTCC
TCCTTCCCTTATCCGCCGCCTCTGCTTCGACCCTCTCGACCCGCACAAGC
ATTCTCTTTCTTGGCAGCAGCAGCACCACTACCATCACCACCGCCATCAC
CACCACCTCCACCTCCACGAACCTTATCGCCGCAGGAGCAGCTGACAAAA
GCATCAGCGTCACCCCTCCTTCGATCCTTCTCCTTCCCATCGTTAAAATC
GAGTTGGCCCTCACAAATCTCGGCCCTCTTCTCCAACCCCCTTCCTCTTC
CTCCTCCTCCTCCCCCTCTTCTTCCTCCCCCAGCGATTGGGCTACTGCCA
AGAATATTCTCTCCTCCCCTCCCTTTACGAAAGGAGAGTTCAAACGAATC
TTCAATCAGTACGCAGACACCATTTATCGGACTGATACCACGGACGTGAT
GGGAGGTCAGAGCGCGCCACCTGCCCCGCTACAAAGCATTCAG
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Synonyms
Publications