jgi.p|Nanoce1779_2|547482, mRNA_9875 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|547482
Unique NamemRNA_9875
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length343
Alignment locationscaffold_45:115625..115967 +

Link to JBrowse

Properties
Property NameValue
TranscriptId547568
TrackFilteredModels2
ProteinId547482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:115625..115967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|547482gene_9875Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|547482mRNA_9875-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9875CDS_9875Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9875 ID=mRNA_9875|Name=jgi.p|Nanoce1779_2|547482|organism=Nannochloropsis oceanica|type=mRNA|length=343bp
GGGAGGGAGGGAGGGAGGGAGGGAAGAAAAGCCAGGAGGGTGTTGGGCTT
GCCATATCCGCTCACTTCACTTTTTCATGTCGCTATTTATCATTCATGTA
TTTATCGATCTCTCCTTTCCACCATCTTTTCCTCAGACAAGCAAAAGCAA
TTCGTCGGAAAAGGCATCTTGCTTCCTCCTCTCAACACCATCAGCATGGC
TCGCTCCTCATCTGGGACATTTGGTGGAATCAGATAAAGGAGGAAGGAGG
GAGGGGGGGAAGGAGGGGGCAAAGGAGGGGGGGAAGGAGGGGGGGAGGGC
GAAAGAGCAAGTATGCAATTATCTCTGGAAGTGTATGTGTGTG
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protein sequence of jgi.p|Nanoce1779_2|547482

>mRNA_9875-protein ID=mRNA_9875-protein|Name=jgi.p|Nanoce1779_2|547482|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MSLFIIHVFIDLSFPPSFPQTSKSNSSEKASCFLLSTPSAWLAPHLGHLV
ESDKGGRREGGKEGAKEGGKEGGRAKEQVCNYLWKCMCV
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mRNA from alignment at scaffold_45:115625..115967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9875 ID=mRNA_9875|Name=jgi.p|Nanoce1779_2|547482|organism=Nannochloropsis oceanica|type=mRNA|length=343bp|location=Sequence derived from alignment at scaffold_45:115625..115967+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGAAGAAAAGCCAGGAGGGTGTTGGGCTT
GCCATATCCGCTCACTTCACTTTTTCATGTCGCTATTTATCATTCATGTA
TTTATCGATCTCTCCTTTCCACCATCTTTTCCTCAGACAAGCAAAAGCAA
TTCGTCGGAAAAGGCATCTTGCTTCCTCCTCTCAACACCATCAGCATGGC
TCGCTCCTCATCTGGGACATTTGGTGGAATCAGATAAAGGAGGAAGGAGG
GAGGGGGGGAAGGAGGGGGCAAAGGAGGGGGGGAAGGAGGGGGGGAGGGC
GAAAGAGCAAGTATGCAATTATCTCTGGAAGTGTATGTGTGTG
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Coding sequence (CDS) from alignment at scaffold_45:115625..115967+

>mRNA_9875 ID=mRNA_9875|Name=jgi.p|Nanoce1779_2|547482|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_45:115625..115967+ (Nannochloropsis oceanica)
ATGTCGCTATTTATCATTCATGTATTTATCGATCTCTCCTTTCCACCATC
TTTTCCTCAGACAAGCAAAAGCAATTCGTCGGAAAAGGCATCTTGCTTCC
TCCTCTCAACACCATCAGCATGGCTCGCTCCTCATCTGGGACATTTGGTG
GAATCAGATAAAGGAGGAAGGAGGGAGGGGGGGAAGGAGGGGGCAAAGGA
GGGGGGGAAGGAGGGGGGGAGGGCGAAAGAGCAAGTATGCAATTATCTCT
GGAAGTGTATGTGTGTG
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Synonyms
Publications