jgi.p|Nanoce1779_2|609447, mRNA_9874 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609447
Unique NamemRNA_9874
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length842
Alignment locationscaffold_45:113896..115282 +

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Properties
Property NameValue
TranscriptId609533
TrackFilteredModels2
ProteinId609447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:113896..115282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609447gene_9874Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609447mRNA_9874-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9874CDS_9874Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9874 ID=mRNA_9874|Name=jgi.p|Nanoce1779_2|609447|organism=Nannochloropsis oceanica|type=mRNA|length=842bp
GGGAGGGAGGGAGGGAGGGAGGGAGAAGTGAAGGCATAATGTCGCCTCCG
TATCAATTTAATATTAACTAATTTATGTGTCATACTACATGTATTATGTG
TATGTCATGTCATGTATATATATTATACAGTATTTTTGAAAATATTACAT
GTATATGTTTATATACATATTAATCCTCGTATATTCTCATGTTCCACTTT
CAGGTTTGTGGCTTGAAATGGTCCCCGGATGGCACGACGCTGGCTTCAGG
CGGCAACGAGAATTTCCTCTGTCTCTGGGACGCGTCTATGATGGAAAGTG
TCACCACCACTGCTCCTCGTCTCTGTCTAAAGGAGCACCAAGCGGCCGTG
AAGGCCCTGGCCTGGTGCCCGTTCCAGCGGTACGTCCCCTCCCTCCCTCC
TTTCTTTTGTTTACTTCTTCGTCCCTTGTTCTTCAATCCTTCCCCTTCAT
GACCCCCCCCCCTTTCCCCCCTACACCGCCACCGCCACCACCATCATCGT
GACCATCCCCACAAGGCCGCCATTCTGACACTCATATCTCCTTTTTTTCC
ATTATCTCCTTGCCCCACCCCACTTTTCGCCCTCTCTCCCTCCCTTCCTT
CCTCCCTCAGTCGCCTCCTCGCCTCGGGGGGAGGGACTCTCGATCGTACC
ATCAAGTTTTGGAACACCCACACAGGCTCCCTCCTCAATAGCGTGGACAC
TGGCAGTCAGGTCTGTGCCTTGCTCTGGTCTCAGCACAACAAGGAGCTCG
TCTCCTCCCACGGCTTCTCGGAAAACCAACTCTGCCTTTGGAAGTACCCC
TCCATGGCCAAGATCAAGGAGCTCAAAGGACACACGGCGCGA
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protein sequence of jgi.p|Nanoce1779_2|609447

>mRNA_9874-protein ID=mRNA_9874-protein|Name=jgi.p|Nanoce1779_2|609447|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MFHFQVCGLKWSPDGTTLASGGNENFLCLWDASMMESVTTTAPRLCLKEH
QAAVKALAWCPFQRYVPSLPPFFCLLLRPLFFNPSPS*
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mRNA from alignment at scaffold_45:113896..115282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9874 ID=mRNA_9874|Name=jgi.p|Nanoce1779_2|609447|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp|location=Sequence derived from alignment at scaffold_45:113896..115282+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGAGAAGTGAAGGCATAATGTCGCCTCCG
TATCAATTTAATATTAACTAATTTATGTGTCATACTACATGTATTATGTG
TATGTCATGTCATGTATATATATTATACAGTATTTTTGAAAATATTACAT
GTATATGTTTATATACATATTAATCCTCGTATATTCTCATGTTCCACTTT
CAGGTTTGTGGCTTGAAATGGTCCCCGGATGGCACGACGCTGGCTTCAGG
CATGTGCTCCCTCCCTCCCTCCATCCTTCCCTCCCTCCCTACCCTCCCTC
CCTCTCTACCTCCAGTATTATTCACTACTCCCTCTCGTTCCCTCCCTCCC
TCCCTCCCCCCCCTCCCTCAGGCGGCAACGAGAATTTCCTCTGTCTCTGG
GACGCGTCTATGATGGAAAGTGTCACCACCACTGCTCCTCGTCTCTGTCT
AAAGGAGCACCAAGCGGCCGTGAAGGCCCTGGCCTGGTGCCCGTTCCAGC
GGTACGTCCCCTCCCTCCCTCCTTTCTTTTGTTTACTTCTTCGTCCCTTG
TTCTTCAATCCTTCCCCTTCATGACCCCCCCCCCTTTCCCCCCTACACCG
CCACCGCCACCACCATCATCGTGACCATCCCCACAAGGCCGCCATTCTGA
CACTCATATCTCCTTTTTTTCCATTATCTCCTTGCCCCACCCCACTTTTC
GCCCTCTCTCCCTCCCTTCCTTCCTCCCTCAGTCGCCTCCTCGCCTCGGG
GGGAGGGACTCTCGATCGTACCATCAAGTTTTGGAACACCCACACAGGCT
CCCTCCTCAATAGCGTGGACACTGGCAGTCAGGTAGGCAAGCCCTCCCTC
CCTCCCTCCCTTTCTCCCTCCCTTCCATCTTTCCTCCTTTCCTCCTCTCT
CTGGCCAGCATGACCCGCACACAAATCGGTCTGTGAAAGTAGTCGTCTAG
TTATTGCCCTCAATCTAATCCTTATGTCATTATCATTATCACCACACAAT
GAATGATGAGTCTACTCCCACGCAATACCAATCTTATTACATTACACGCG
GTACCAATTACATTACATTACACGCCGTGCCAATCTAATTACATTACTCT
TCATTTCGCGACAGGTCTGTGCCTTGCTCTGGTCTCAGCACAACAAGGAG
CTCGTCTCCTCCCACGGCTTCTCGGAAAACCAACTCTGGTATGTCCCCTC
CCTCCCCTCCCTCCCTCCCCCCCTCCCTTCTCATGTCACACCCTTTTTAA
TGCCCCTACACGATGATGTTTGCTTTTTCTGACCCTCCCTCATTCCCTCC
CTCCCTCCTTCCCTCCCACCCTCCCCCAGCCTTTGGAAGTACCCCTCCAT
GGCCAAGATCAAGGAGCTCAAAGGACACACGGCGCGA
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Coding sequence (CDS) from alignment at scaffold_45:113896..115282+

>mRNA_9874 ID=mRNA_9874|Name=jgi.p|Nanoce1779_2|609447|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_45:113896..115282+ (Nannochloropsis oceanica)
ATGTTCCACTTTCAGGTTTGTGGCTTGAAATGGTCCCCGGATGGCACGAC
GCTGGCTTCAGGCGGCAACGAGAATTTCCTCTGTCTCTGGGACGCGTCTA
TGATGGAAAGTGTCACCACCACTGCTCCTCGTCTCTGTCTAAAGGAGCAC
CAAGCGGCCGTGAAGGCCCTGGCCTGGTGCCCGTTCCAGCGGTACGTCCC
CTCCCTCCCTCCTTTCTTTTGTTTACTTCTTCGTCCCTTGTTCTTCAATC
CTTCCCCTTCATGAATGTTCCACTTTCAGGTTTGTGGCTTGAAATGGTCC
CCGGATGGCACGACGCTGGCTTCAGGCGGCAACGAGAATTTCCTCTGTCT
CTGGGACGCGTCTATGATGGAAAGTGTCACCACCACTGCTCCTCGTCTCT
GTCTAAAGGAGCACCAAGCGGCCGTGAAGGCCCTGGCCTGGTGCCCGTTC
CAGCGGTACGTCCCCTCCCTCCCTCCTTTCTTTTGTTTACTTCTTCGTCC
CTTGTTCTTCAATCCTTCCCCTTCATGA
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Synonyms
Publications