jgi.p|Nanoce1779_2|315004, mRNA_9873 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|315004
Unique NamemRNA_9873
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length687
Alignment locationscaffold_45:110608..111294 -

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Properties
Property NameValue
TranscriptId315090
TrackFilteredModels2
ProteinId315004
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:110608..111294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|315004gene_9873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|315004mRNA_9873-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9873CDS_9873Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9873 ID=mRNA_9873|Name=jgi.p|Nanoce1779_2|315004|organism=Nannochloropsis oceanica|type=mRNA|length=687bp
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGATGATGTACCGTCATGCCTCCTCCTGGTAGTGGGT
GTCGTCGTTGCTGATGACTACTGGAGGAAGGCGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGCAGGATGGTCTTCCAAGTGCAGGAGAGTTTGTTGG
AGGAAGAGCAGCGGTGCTAGCAGCAATTGCCGCAACGGGGCAGGAGGAGA
AAGAGGAGGAGGAAGAGGAAGCAAAGGGGGAGGAAGGGGAGGAGGGCTTG
CGCCGCTTATACCCACTGCCTCCCCCTCTTCCTCCTGCGCTGTAGGGAGG
ACGGTTGCCCCCTCCACCACCACTGGGGAAGGAGGGGAGGAAGATGAGAG
TGAAGGAGGTAAGAAGGATGGAAATAAGGTGAATGCGATGATGTCCTCTT
TACCCTTTGGACGCAAGGGGAAAGTAATGCCGCCACATACCGACTCTCAA
TCAACCTTCTCTCCTTCCTTTCCTCCCTCCCTCCCCTCCCTTCCTCCTAT
GACTACCTCCACGAAGGCGAGTAGATAGGCGAAGAAGTTATAGTCCGCCG
TTTCACTGGCGTCCGCGGTGCGCCACCCCCCGGCCCTAAAGGTGGTAGGG
CAGGAGGAGCAGGAGGAGCTGTTGCTGCTGCTGTTGC
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protein sequence of jgi.p|Nanoce1779_2|315004

>mRNA_9873-protein ID=mRNA_9873-protein|Name=jgi.p|Nanoce1779_2|315004|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MTTGGRRGGGGGGGGGGAGWSSKCRRVCWRKSSGASSNCRNGAGGERGGG
RGSKGGGRGGGLAPLIPTASPSSSCAVGRTVAPSTTTGEGGEEDESEGGK
KDGNKVNAMMSSLPFGRKGKVMPPHTDSQSTFSPSFPPSLPSLPPMTTST
KASR*
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mRNA from alignment at scaffold_45:110608..111294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9873 ID=mRNA_9873|Name=jgi.p|Nanoce1779_2|315004|organism=Nannochloropsis oceanica|type=mRNA|length=687bp|location=Sequence derived from alignment at scaffold_45:110608..111294- (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGATGATGTACCGTCATGCCTCCTCCTGGTAGTGGGT
GTCGTCGTTGCTGATGACTACTGGAGGAAGGCGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGCAGGATGGTCTTCCAAGTGCAGGAGAGTTTGTTGG
AGGAAGAGCAGCGGTGCTAGCAGCAATTGCCGCAACGGGGCAGGAGGAGA
AAGAGGAGGAGGAAGAGGAAGCAAAGGGGGAGGAAGGGGAGGAGGGCTTG
CGCCGCTTATACCCACTGCCTCCCCCTCTTCCTCCTGCGCTGTAGGGAGG
ACGGTTGCCCCCTCCACCACCACTGGGGAAGGAGGGGAGGAAGATGAGAG
TGAAGGAGGTAAGAAGGATGGAAATAAGGTGAATGCGATGATGTCCTCTT
TACCCTTTGGACGCAAGGGGAAAGTAATGCCGCCACATACCGACTCTCAA
TCAACCTTCTCTCCTTCCTTTCCTCCCTCCCTCCCCTCCCTTCCTCCTAT
GACTACCTCCACGAAGGCGAGTAGATAGGCGAAGAAGTTATAGTCCGCCG
TTTCACTGGCGTCCGCGGTGCGCCACCCCCCGGCCCTAAAGGTGGTAGGG
CAGGAGGAGCAGGAGGAGCTGTTGCTGCTGCTGTTGC
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Coding sequence (CDS) from alignment at scaffold_45:110608..111294-

>mRNA_9873 ID=mRNA_9873|Name=jgi.p|Nanoce1779_2|315004|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_45:110608..111294- (Nannochloropsis oceanica)
ATGACTACTGGAGGAAGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGCAGGATGGTCTTCCAAGTGCAGGAGAGTTTGTTGGAGGAAGAGCAGCG
GTGCTAGCAGCAATTGCCGCAACGGGGCAGGAGGAGAAAGAGGAGGAGGA
AGAGGAAGCAAAGGGGGAGGAAGGGGAGGAGGGCTTGCGCCGCTTATACC
CACTGCCTCCCCCTCTTCCTCCTGCGCTGTAGGGAGGACGGTTGCCCCCT
CCACCACCACTGGGGAAGGAGGGGAGGAAGATGAGAGTGAAGGAGGTAAG
AAGGATGGAAATAAGGTGAATGCGATGATGTCCTCTTTACCCTTTGGACG
CAAGGGGAAAGTAATGCCGCCACATACCGACTCTCAATCAACCTTCTCTC
CTTCCTTTCCTCCCTCCCTCCCCTCCCTTCCTCCTATGACTACCTCCACG
AAGGCGAGTAGATAG
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Synonyms
Publications