jgi.p|Nanoce1779_2|674506, mRNA_9871 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674506
Unique Name	mRNA_9871
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2139
Alignment location	scaffold_45:104163..106456 +

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Properties


Property Name	Value
TranscriptId	674592
Track	FilteredModels2
ProteinId	674506

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:104163..106456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674506	gene_9871	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674506	mRNA_9871-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9871	CDS_9871	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:104163..106456+
coding sequence from alignment at scaffold_45:104163..106456+

mRNA sequence

>mRNA_9871 ID=mRNA_9871|Name=jgi.p|Nanoce1779_2|674506|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp
CTTGATGTTGGTGCTGCAGCTGCTGCTCATGGTCGTACAGGTCTTGGCTA
GCGCCCACCATTGGAAAGGACGAGGGAGACACAGGGAGACTGACACTGCG
GAGAGCGAGGGAGGCGACGATCGCGCCTTGGAAAGGGAGATTCTGGTGTT
GTTGTTTTCCTCAAAGGCCACGTTTGTGGCACGTTTATGGGCACAATAAG
CGATCGTCTTCTGTAGAGGGAGGCAGAGAGTTTGCGTATGGGTTAGTAAA
GGCTACTCTTGCGTGTGGATTAGTAAAGGCTGCATGTACTAACAGCATGA
CGAAAGCAATAGCTATCACAATATGATCGGTCAGTGGGAAGCACACCACA
TAGGTCAATAGAGCTCGTCTCCCGCCCGCCCTCCATTCTCCCATCCTCCA
TGCACTTCACAGATGGTCGTCACGGCCATGTTGTACATGGATGGATTTGA
AGGAAGGAGGGATCAGTCCCTCACACTGGCAGGCAGACAGACACCTGTCG
CATGGAAGCTACAAAAAAACGGACACGCTGAAGGCAACGAACGCGAGGTA
AGCAGGCAATAATTCTCACATCCAGGCCTTGACCATTCAACCACGGTTAC
AACATCTCCATTCGATACACAGAAAGAATAGTCTGGTAGTGTAGGCGCTG
CTGGTGGTGGTTCTCGGCTGCTGCCGCCCCAAAAAGCCTAAACTTCGTTT
CAATGGCGACAGTGATCATCGATCATTACTTCCACTCCACATTTCCACGC
GGCCTTTCACCATCACTCTTTACCACTCCTCCATCCCGACACAGACAGGC
ACGCCAAGCCCTTGTTTGTGAAAAAACGAGGCAGATCCTTTCTTCCTTCC
TATTACCTGGAAGGCAGAGGCCGCTTAGAGTATCCTGTTTGACTGCCCTT
TGCCCTCCTCGTTCTACGACCTCCTCCCCCCCAGTCTCTATCCCAACGTC
TCGTGGCCACCATTCAACGCCAAGCAAGCTAAGAAACATTCGGTTTAAAA
ACAATATGCCTCGGTCACAGCATTACAATAATGTATTTCGTCCATCCTCC
TCTTTGCTAGACGACCAGGCCCTCGATGGTGGCTTCGGCGGCAGCAGCGC
CAGCAGCAGCAGCAGCAGTAGTAGTAGTAGAAGTAGTGGGAATAGTAGTA
GTGGTGAAGACTCCGACGACGACGAAGAAATTCATCACCACCATCACCAC
CAAAACGGTCACCGTCCCGGCTCATTCTCTACCTCTTCCTCCTCCAGCAG
CAGCAGCGGCAGTAGCCACAACAACGGCAGTCCCGACCACTTGACACATG
CAGAGCTCACCCTCTTCTCCTCCTTCGTCGCCCATGCCCACTTGGCCCTT
CCCGACTGGGATGAAGAGGATATGGGCAAACTCATCTATCTCATCTCGAC
GTTCAAAAACAAACATTTAAATTCCAAAAAATTGTTTCACTTCATTGCCT
CTTCCTGCCCTGAATACGTCACGGGACCCTTCCTGGCTCGTGTGATGGGA
CCGGAGGGCGGGAGGAAGGAAAAGAGAAAGGGCAGGTTGCTAAATGCGAA
GCAGGTGGTGCAATTAATCGAGGCGGGAGCTCGGAATAAAGAGGACCTGA
TCTTGAAGATTGTGGACGTGCTGGAGCACCAGGTCCTGTCGTTGTCGGAC
GAAGCGACTGCGTTATGCCTGGTGGCTACTGTAGACGGACAGCACCCCTC
CCTCAAGCGGTCCCTTGCCCTCGCCCTCGGGGAGATGTGTGAATCGAAGG
GTCAATTTATTTTCCTCCTGTCCCTCTTTCAGGAACGGGGGAAGGGGGGG
AGGGACGGGTGGATGAGGGAGGTAGGGCGGGAGGCCGCTGCACTTTGGTG
GGAGGATTTGGGCGCTGGAAGGGGGGGGAGGAGGAGAAAGGGGAGGAAGA
GGAGGGAGGGAGGGAGGGAGGAAGAGGAGGAGGAAGAGCTGAGGAGGTTG
TACCCGGAGGTGGAGGAATTTTGGGAGGGGATAAGGGAGAGGAGGGAGCA
GGAGGGAGGGGAGGAGGACGAGGAGGACGAGGAGGGGAACCTGAAGGGTT
TTGTGGTGAGGGATGAGGAGGGGTTGGAGGAGGAGGGGGGGGGAGGAGGA
GGAGGAGGAGGAGGGGGAGGAGGAAGAGGGGTTGGATGA

protein sequence of jgi.p|Nanoce1779_2|674506

>mRNA_9871-protein ID=mRNA_9871-protein|Name=jgi.p|Nanoce1779_2|674506|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MATVIIDHYFHSTFPRGLSPSLFTTPPSRHRQARQALVCEKTRQILSSFL
LPGRQRPLRVSCLTALCPPRSTTSSPPVSIPTSRGHHSTPSKLRNIRFKN
NMPRSQHYNNVFRPSSSLLDDQALDGGFGGSSASSSSSSSSSRSSGNSSS
GEDSDDDEEIHHHHHHQNGHRPGSFSTSSSSSSSSGSSHNNGSPDHLTHA
ELTLFSSFVAHAHLALPDWDEEDMGKLIYLISTFKNKHLNSKKLFHFIAS
SCPEYVTGPFLARVMGPEGGRKEKRKGRLLNAKQVVQLIEAGARNKEDLI
LKIVDVLEHQVLSLSDEATALCLVATVDGQHPSLKRSLALALGEMCESKG
QFIFLLSLFQERGKGGRDGWMREVGREAAALWWEDLGAGRGGRRRKGRKR
REGGREEEEEEELRRLYPEVEEFWEGIRERREQEGGEEDEEDEEGNLKGF
VVRDEEGLEEEGGGGGGGGGGGGGRGVG*

mRNA from alignment at scaffold_45:104163..106456+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9871 ID=mRNA_9871|Name=jgi.p|Nanoce1779_2|674506|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_45:104163..106456+ (Nannochloropsis oceanica)
CTTGATGTTGGTGCTGCAGCTGCTGCTCATGGTCGTACAGGTCTTGGCTA
GCGCCCACCATTGGAAAGGACGAGGGAGACACAGGGAGACTGACACTGCG
GAGAGCGAGGGAGGCGACGATCGCGCCTTGGAAAGGGAGATTCTGGTGTT
GTTGTTTTCCTCAAAGGCCACGTTTGTGGCACGTTTATGGGCACAATAAG
CGATCGTCTTCTGTAGAGGGAGGCAGAGAGTTTGCGTATGGGTTAGTAAA
GGCTACTCTTGCGTGTGGATTAGTAAAGGCTGCATGTACTAACAGCATGA
CGAAAGCAATAGCTATCACAATATGATCGGTCAGTGGGAAGCACACCACA
TAGGTCAATAGAGCTCGTCTCCCGCCCGCCCTCCATTCTCCCATCCTCCA
TGCACTTCACAGATGGTCGTCACGGCCATGTTGTACATGGATGGATTTGA
AGGAAGGAGGGATCAGTCCCTCACACTGGCAGGCAGACAGACACCTGTCG
CATGGAAGCTACAAAAAAACGGACACGCTGAAGGCAACGAACGCGAGGTA
AGCAGGCAATAATTCTCACATCCAGGCCTTGACCATTCAACCACGGTTAC
AACATCTCCATTCGATACACAGAAAGAATAGTCTGGTAGTGTAGGCGCTG
CTGGTGGTGGTTCTCGGCTGCTGCCGCCCCAAAAAGCCTAAACTTCGTTT
CAATGGCGACAGTGATCATCGATCATTACTTCCACTCCACATTTCCACGC
GGCCTTTCACCATCACTCTTTACCACTCCTCCATCCCGACACAGACAGGC
ACGCCAAGCCCTTGTTTGTGAAAAAACGAGGCAGATCCTTTCTTCCTTCC
TATTACCTGGAAGGCAGAGGCCGCTTAGAGTATCCTGTTTGACTGCCCTT
TGCCCTCCTCGTTCTACGACCTCCTCCCCCCCAGTCTCTATCCCAACGTC
TCGTGGCCACCATTCAACGCCAAGCAAGCTAAGAAACATTCGGTTTAAAA
ACAATATGCCTCGGTCACAGCATTACAATAATGTATTTCGTCCATCCTCC
TCTTTGCTAGACGACCAGGCCCTCGATGGTGGCTTCGGCGGCAGCAGCGC
CAGCAGCAGCAGCAGCAGTAGTAGTAGTAGAAGTAGTGGGAATAGTAGTA
GTGGTGAAGACTCCGACGACGACGAAGAAATTCATCACCACCATCACCAC
CAAAACGGTCACCGTCCCGGCTCATTCTCTACCTCTTCCTCCTCCAGCAG
CAGCAGCGGCAGTAGCCACAACAACGGCAGTCCCGACCACTTGACACATG
CAGAGCTCACCCTCTTCTCCTCCTTCGTCGCCCATGCCCACTTGGCCCTT
CCCGACTGGGATGAAGAGGATATGGGCAAACTCATCTATCTCATCTCGAC
GTTCAAAAACAAACATTTAAATTCCAAAAAATTGTTTCACTTCATTGCCT
CTTCCTGCCCTGAATACGTCACGGGACCCTTCCTGGCTCGTGTGATGGGA
CCGGAGGGCGGGAGGAAGGAAAAGAGAAAGGGCAGGTTGCTAAATGCGAA
GCAGGTGGTGCAATTAATCGAGGCGGGAGCTCGGAATAAAGAGGACCTGA
TCTTGAAGATTGTGGACGTGCTGGAGCACCAGGTGAACCCTCCCTCCCTC
CCTCCCTCCATTCCTCCCTTCTTCCCTCCCTCCCTCCTCTACTTCACGTC
CAACTGCCCTCCCTGCCTCCCTCCCTTGCCTTGGCTGACGGCTCATTCCA
TCCCTTTGCTCCTTCCCTTCCTTCCCTCTCTCCTCAGGTCCTGTCGTTGT
CGGACGAAGCGACTGCGTTATGCCTGGTGGCTACTGTAGACGGACAGCAC
CCCTCCCTCAAGCGGTCCCTTGCCCTCGCCCTCGGGGAGATGTGTGAATC
GAAGGGTCAATTTATTTTCCTCCTGTCCCTCTTTCAGGAACGGGGGAAGG
GGGGGAGGGACGGGTGGATGAGGGAGGTAGGGCGGGAGGCCGCTGCACTT
TGGTGGGAGGATTTGGGCGCTGGAAGGGGGGGGAGGAGGAGAAAGGGGAG
GAAGAGGAGGGAGGGAGGGAGGGAGGAAGAGGAGGAGGAAGAGCTGAGGA
GGTTGTACCCGGAGGTGGAGGAATTTTGGGAGGGGATAAGGGAGAGGAGG
GAGCAGGAGGGAGGGGAGGAGGACGAGGAGGACGAGGAGGGGAACCTGAA
GGGTTTTGTGGTGAGGGATGAGGAGGGGTTGGAGGAGGAGGGGGGGGGAG
GAGGAGGAGGAGGAGGAGGGGGAGGAGGAAGAGGGGTTGGATGA

Coding sequence (CDS) from alignment at scaffold_45:104163..106456+

>mRNA_9871 ID=mRNA_9871|Name=jgi.p|Nanoce1779_2|674506|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_45:104163..106456+ (Nannochloropsis oceanica)
ATGGCGACAGTGATCATCGATCATTACTTCCACTCCACATTTCCACGCGG
CCTTTCACCATCACTCTTTACCACTCCTCCATCCCGACACAGACAGGCAC
GCCAAGCCCTTGTTTGTGAAAAAACGAGGCAGATCCTTTCTTCCTTCCTA
TTACCTGGAAGGCAGAGGCCGCTTAGAGTATCCTGTTTGACTGCCCTTTG
CCCTCCTCGTTCTACGACCTCCTCCCCCCCAGTCTCTATCCCAACGTCTC
GTGGCCACCATTCAACGCCAAGCAAGCTAAGAAACATTCGGTTTAAAAAC
AATATGCCTCGGTCACAGCATTACAATAATGTATTTCGTCCATCCTCCTC
TTTGCTAGACGACCAGGCCCTCGATGGTGGCTTCGGCGGCAGCAGCGCCA
GCAGCAGCAGCAGCAGTAGTAGTAGTAGAAGTAGTGGGAATAGTAGTAGT
GGTGAAGACTCCGACGACGACGAAGAAATTCATCACCACCATCACCACCA
AAACGGTCACCGTCCCGGCTCATTCTCTACCTCTTCCTCCTCCAGCAGCA
GCAGCGGCAGTAGCCACAACAACGGCAGTCCCGACCACTTGACACATGCA
GAGCTCACCCTCTTCTCCTCCTTCGTCGCCCATGCCCACTTGGCCCTTCC
CGACTGGGATGAAGAGGATATGGGCAAACTCATCTATCTCATCTCGACGT
TCAAAAACAAACATTTAAATTCCAAAAAATTGTTTCACTTCATTGCCTCT
TCCTGCCCTGAATACGTCACGGGACCCTTCCTGGCTCGTGTGATGGGACC
GGAGGGCGGGAGGAAGGAAAAGAGAAAGGGCAGGTTGCTAAATGCGAAGC
AGGTGGTGCAATTAATCGAGGCGGGAGCTCGGAATAAAGAGGACCTGATC
TTGAAGATTGTGGACGTGCTGGAGCACCAGGTCCTGTCGTTGTCGGACGA
AGCGACTGCGTTATGCCTGGTGGCTACTGTAGACGGACAGCACCCCTCCC
TCAAGCGGTCCCTTGCCCTCGCCCTCGGGGAGATGTGTGAATCGAAGGGT
CAATTTATTTTCCTCCTGTCCCTCTTTCAGGAACGGGGGAAGGGGGGGAG
GGACGGGTGGATGAGGGAGGTAGGGCGGGAGGCCGCTGCACTTTGGTGGG
AGGATTTGGGCGCTGGAAGGGGGGGGAGGAGGAGAAAGGGGAGGAAGAGG
AGGGAGGGAGGGAGGGAGGAAGAGGAGGAGGAAGAGCTGAGGAGGTTGTA
CCCGGAGGTGGAGGAATTTTGGGAGGGGATAAGGGAGAGGAGGGAGCAGG
AGGGAGGGGAGGAGGACGAGGAGGACGAGGAGGGGAACCTGAAGGGTTTT
GTGGTGAGGGATGAGGAGGGGTTGGAGGAGGAGGGGGGGGGAGGAGGAGG
AGGAGGAGGAGGGGGAGGAGGAAGAGGGGTTGGATGAATGGCGACAGTGA
TCATCGATCATTACTTCCACTCCACATTTCCACGCGGCCTTTCACCATCA
CTCTTTACCACTCCTCCATCCCGACACAGACAGGCACGCCAAGCCCTTGT
TTGTGAAAAAACGAGGCAGATCCTTTCTTCCTTCCTATTACCTGGAAGGC
AGAGGCCGCTTAGAGTATCCTGTTTGACTGCCCTTTGCCCTCCTCGTTCT
ACGACCTCCTCCCCCCCAGTCTCTATCCCAACGTCTCGTGGCCACCATTC
AACGCCAAGCAAGCTAAGAAACATTCGGTTTAAAAACAATATGCCTCGGT
CACAGCATTACAATAATGTATTTCGTCCATCCTCCTCTTTGCTAGACGAC
CAGGCCCTCGATGGTGGCTTCGGCGGCAGCAGCGCCAGCAGCAGCAGCAG
CAGTAGTAGTAGTAGAAGTAGTGGGAATAGTAGTAGTGGTGAAGACTCCG
ACGACGACGAAGAAATTCATCACCACCATCACCACCAAAACGGTCACCGT
CCCGGCTCATTCTCTACCTCTTCCTCCTCCAGCAGCAGCAGCGGCAGTAG
CCACAACAACGGCAGTCCCGACCACTTGACACATGCAGAGCTCACCCTCT
TCTCCTCCTTCGTCGCCCATGCCCACTTGGCCCTTCCCGACTGGGATGAA
GAGGATATGGGCAAACTCATCTATCTCATCTCGACGTTCAAAAACAAACA
TTTAAATTCCAAAAAATTGTTTCACTTCATTGCCTCTTCCTGCCCTGAAT
ACGTCACGGGACCCTTCCTGGCTCGTGTGATGGGACCGGAGGGCGGGAGG
AAGGAAAAGAGAAAGGGCAGGTTGCTAAATGCGAAGCAGGTGGTGCAATT
AATCGAGGCGGGAGCTCGGAATAAAGAGGACCTGATCTTGAAGATTGTGG
ACGTGCTGGAGCACCAGGTCCTGTCGTTGTCGGACGAAGCGACTGCGTTA
TGCCTGGTGGCTACTGTAGACGGACAGCACCCCTCCCTCAAGCGGTCCCT
TGCCCTCGCCCTCGGGGAGATGTGTGAATCGAAGGGTCAATTTATTTTCC
TCCTGTCCCTCTTTCAGGAACGGGGGAAGGGGGGGAGGGACGGGTGGATG
AGGGAGGTAGGGCGGGAGGCCGCTGCACTTTGGTGGGAGGATTTGGGCGC
TGGAAGGGGGGGGAGGAGGAGAAAGGGGAGGAAGAGGAGGGAGGGAGGGA
GGGAGGAAGAGGAGGAGGAAGAGCTGAGGAGGTTGTACCCGGAGGTGGAG
GAATTTTGGGAGGGGATAAGGGAGAGGAGGGAGCAGGAGGGAGGGGAGGA
GGACGAGGAGGACGAGGAGGGGAACCTGAAGGGTTTTGTGGTGAGGGATG
AGGAGGGGTTGGAGGAGGAGGGGGGGGGAGGAGGAGGAGGAGGAGGAGGG
GGAGGAGGAAGAGGGGTTGGATGA

Synonyms

Publications