jgi.p|Nanoce1779_2|314894, mRNA_9868 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|314894
Unique NamemRNA_9868
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1164
Alignment locationscaffold_45:95262..96425 +

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Properties
Property NameValue
TranscriptId314980
TrackFilteredModels2
ProteinId314894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:95262..96425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314894gene_9868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314894mRNA_9868-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9868CDS_9868Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9868 ID=mRNA_9868|Name=jgi.p|Nanoce1779_2|314894|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
GCGTGTTCTTTTTCAATGATTCGTTTTCCTTTTCGTTTTTTGTTCATCCT
TTTCGCCCATCATAGCCCAACCAACAAGGCTTTTCTCTTCTTATTTCCCG
GGCCCCTCCCCACACATTTCTTTTTCTCCCGTCTAGCCACCAGACATACT
CATACTCTTTTTAGTTGAAGATAGACTATAACGCTGGGCAACACCGACAG
TCTTATTGTCAATGCTCATCATTTATCCCTTGATTAATCTTCTCCACGAC
ACTCATTCGCACCACGATCGCAAAGTACCTTTTTACACCCACACCCCTTC
ACTCATACCTAGATCTTTTCTGAATTCATCGGCAATGACCACCATGCCTC
CCTCCTTCCTTCCATCTTTCTGCTCCCCGCCCTTCTGCTCCTCCTCTCTC
CCTTCAACCTTCCCTTCCTTCACCCCTCCACATGCCTCACCCACTTCCAC
CACCACCAACGCCTTCTCCCTCATTTCCTCCCTCCCTCCAATTTTCCCAC
CCTCTTTCGTCCACATCTCCTCCGTCACTTTGATGTCTGTGCTACTCACA
CTCCCCTTCCTCTCTCCCCTTCTCCCCTTCCTCCCTCCCTCCCTCCCACC
CACCTCCTTCTCAATCGCCCTCACTATCTCTTCCACCTCCTCCAACCTCT
TCTTCTCCTTCTCGACCTTTTCCCTCTTCTTTCTCTCCTCTTGTGCTTCG
AACTCGCTCTCTCCCTCTCTCATTATCTCCGCCGCCCTCTTTTCGATAGC
TTCCCGCATCTCCTCCTCACTCATCGTCTTCCCTCCCTTCCTCCACCCCT
CCCCCGCCACATACCCAATTATCAGACACAACACACTCGCACACAAGAAG
AGTGAACACAAAACCATCATCACCAGCCTGCTACTGCTACTGCCGACAGC
AGCAGAACTTGCAGGAGTAAATGCGACGGGGAGAAAGAGGAGGGAGAGGA
GGAGGAAGGGAATCGAGAGAAGGAAGCAGAGGAGGCGGCGTTTAAGAGCC
TCTTGACGACGGAGGGGGAGGGAAGCCTTGTGCGCGATGTACGCAGAGGC
TTCATCTTCTCTCACTTGCATGTTGGCTGCCAGACGGGCAAGGCGGAGGC
TTCTTGTTACCTGTCCTGGGTCAAGGATGCTGTGGAAAGGAAAGGGTGGA
AGGAAGAAAGTGTG
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protein sequence of jgi.p|Nanoce1779_2|314894

>mRNA_9868-protein ID=mRNA_9868-protein|Name=jgi.p|Nanoce1779_2|314894|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLIIYPLINLLHDTHSHHDRKVPFYTHTPSLIPRSFLNSSAMTTMPPSFL
PSFCSPPFCSSSLPSTFPSFTPPHASPTSTTTNAFSLISSLPPIFPPSFV
HISSVTLMSVLLTLPFLSPLLPFLPPSLPPTSFSIALTISSTSSNLFFSF
STFSLFFLSSCASNSLSPSLIISAALFSIASRISSSLIVFPPFLHPSPAT
YPIIRHNTLAHKKSEHKTIITSLLLLLPTAAELAGVNATGRKRRERRRKG
IERRKQRRRRLRAS*
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mRNA from alignment at scaffold_45:95262..96425+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9868 ID=mRNA_9868|Name=jgi.p|Nanoce1779_2|314894|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at scaffold_45:95262..96425+ (Nannochloropsis oceanica)
GCGTGTTCTTTTTCAATGATTCGTTTTCCTTTTCGTTTTTTGTTCATCCT
TTTCGCCCATCATAGCCCAACCAACAAGGCTTTTCTCTTCTTATTTCCCG
GGCCCCTCCCCACACATTTCTTTTTCTCCCGTCTAGCCACCAGACATACT
CATACTCTTTTTAGTTGAAGATAGACTATAACGCTGGGCAACACCGACAG
TCTTATTGTCAATGCTCATCATTTATCCCTTGATTAATCTTCTCCACGAC
ACTCATTCGCACCACGATCGCAAAGTACCTTTTTACACCCACACCCCTTC
ACTCATACCTAGATCTTTTCTGAATTCATCGGCAATGACCACCATGCCTC
CCTCCTTCCTTCCATCTTTCTGCTCCCCGCCCTTCTGCTCCTCCTCTCTC
CCTTCAACCTTCCCTTCCTTCACCCCTCCACATGCCTCACCCACTTCCAC
CACCACCAACGCCTTCTCCCTCATTTCCTCCCTCCCTCCAATTTTCCCAC
CCTCTTTCGTCCACATCTCCTCCGTCACTTTGATGTCTGTGCTACTCACA
CTCCCCTTCCTCTCTCCCCTTCTCCCCTTCCTCCCTCCCTCCCTCCCACC
CACCTCCTTCTCAATCGCCCTCACTATCTCTTCCACCTCCTCCAACCTCT
TCTTCTCCTTCTCGACCTTTTCCCTCTTCTTTCTCTCCTCTTGTGCTTCG
AACTCGCTCTCTCCCTCTCTCATTATCTCCGCCGCCCTCTTTTCGATAGC
TTCCCGCATCTCCTCCTCACTCATCGTCTTCCCTCCCTTCCTCCACCCCT
CCCCCGCCACATACCCAATTATCAGACACAACACACTCGCACACAAGAAG
AGTGAACACAAAACCATCATCACCAGCCTGCTACTGCTACTGCCGACAGC
AGCAGAACTTGCAGGAGTAAATGCGACGGGGAGAAAGAGGAGGGAGAGGA
GGAGGAAGGGAATCGAGAGAAGGAAGCAGAGGAGGCGGCGTTTAAGAGCC
TCTTGACGACGGAGGGGGAGGGAAGCCTTGTGCGCGATGTACGCAGAGGC
TTCATCTTCTCTCACTTGCATGTTGGCTGCCAGACGGGCAAGGCGGAGGC
TTCTTGTTACCTGTCCTGGGTCAAGGATGCTGTGGAAAGGAAAGGGTGGA
AGGAAGAAAGTGTG
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Coding sequence (CDS) from alignment at scaffold_45:95262..96425+

>mRNA_9868 ID=mRNA_9868|Name=jgi.p|Nanoce1779_2|314894|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_45:95262..96425+ (Nannochloropsis oceanica)
ATGCTCATCATTTATCCCTTGATTAATCTTCTCCACGACACTCATTCGCA
CCACGATCGCAAAGTACCTTTTTACACCCACACCCCTTCACTCATACCTA
GATCTTTTCTGAATTCATCGGCAATGACCACCATGCCTCCCTCCTTCCTT
CCATCTTTCTGCTCCCCGCCCTTCTGCTCCTCCTCTCTCCCTTCAACCTT
CCCTTCCTTCACCCCTCCACATGCCTCACCCACTTCCACCACCACCAACG
CCTTCTCCCTCATTTCCTCCCTCCCTCCAATTTTCCCACCCTCTTTCGTC
CACATCTCCTCCGTCACTTTGATGTCTGTGCTACTCACACTCCCCTTCCT
CTCTCCCCTTCTCCCCTTCCTCCCTCCCTCCCTCCCACCCACCTCCTTCT
CAATCGCCCTCACTATCTCTTCCACCTCCTCCAACCTCTTCTTCTCCTTC
TCGACCTTTTCCCTCTTCTTTCTCTCCTCTTGTGCTTCGAACTCGCTCTC
TCCCTCTCTCATTATCTCCGCCGCCCTCTTTTCGATAGCTTCCCGCATCT
CCTCCTCACTCATCGTCTTCCCTCCCTTCCTCCACCCCTCCCCCGCCACA
TACCCAATTATCAGACACAACACACTCGCACACAAGAAGAGTGAACACAA
AACCATCATCACCAGCCTGCTACTGCTACTGCCGACAGCAGCAGAACTTG
CAGGAGTAAATGCGACGGGGAGAAAGAGGAGGGAGAGGAGGAGGAAGGGA
ATCGAGAGAAGGAAGCAGAGGAGGCGGCGTTTAAGAGCCTCTTGA
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Synonyms
Publications