jgi.p|Nanoce1779_2|609413, mRNA_9867 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609413
Unique Name	mRNA_9867
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1035
Alignment location	scaffold_45:92554..93588 +

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Properties


Property Name	Value
TranscriptId	609499
Track	FilteredModels2
ProteinId	609413

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:92554..93588 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609413	gene_9867	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609413	mRNA_9867-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9867	CDS_9867	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:92554..93588+
coding sequence from alignment at scaffold_45:92554..93588+

mRNA sequence

>mRNA_9867 ID=mRNA_9867|Name=jgi.p|Nanoce1779_2|609413|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
CTCCACCGCCACTGCTGCTCCTCCTGCGGCCTTTAGTTGTAGAGGCTGGG
GGGGGAGGAGGAAGGGGAGGAGGCAGGACACGTAACAGGTGGGGAGGAGG
CGGGGGGAAACTAACTGCGCCGTTGATGCCGGGAGCTGGGGAAAGGAGAG
ATGGAGGAGGTATGTGCATGGCAGGGACGGGGGTGAGGTGGCGTTGATCC
ATGGGAAGGAGGTCGTCTGGTGTGCCGGCCGGAGCGAGGGGGAGGGAAGG
AATGCCGTCGACGTGCTGGTGCTGCTGATGATGCTGCTGCTGCTGCTGCT
GGTGGTGATAATAATGATGGGGAGGTTGCTGCTTCTCCTCCCCCAGTATA
TGGTGGTGATGAGGTTGCAGGTGAGAAGGGAGGTCTCCCCCTACTCCTCC
TCCTCCTTCCATCCTTCCTCCTATTCCTGCCCCGTCGTCGACGGGGGGAG
AAAGGGATTGCATGTGCATGATCACCTTAACCTCCTGCCTGGTCGCGTCT
CCCTCTTTATTGACCGTCGTGGGTTTACTGCAACTGCTGCTACTGTTGAT
GCTTTTGAGCGAGTTACGCCTGCTCCTGCGCGTGGGTTGCTCAATAGTTA
TTTGTAAAGAGGAGGGGAGAGAAGAGCACGACAGTGCACTGCTCTCCTAC
CGCTGCCCCTGTGCTTGTTGCTGATGCCGCAGCTGCCGCTGCTTTTCCGG
TTGCTCGCCTGTCGTCTGATACAGGAAAGCGCGCGAAATGGGAGGAGAGA
GGGGGGGAAGGACAACGCTCTGCTGTCCCTGTGCTGTAGCTATTGCTGTT
GGTGCTCCTCCGTTGAGGTATTGCTCTTGGCGTCAAAGCACTGCTCAGGA
GGCGGTGTCCATGCCTCTACGTGTTAAGGTCGAGGTAGATGCACACGAAG
AGGACGAATTGCCGAGAGAAAGGGGGATGGTCGTTCACTCCGCCCGCTTT
CGCTGGTGCTGTCCCTCCTGATGGTGGCGCTGCTGATGGTACTGCTGCTG
CCGCCGCTACCACTCCTACTGCTGCGTAGCACTGT

protein sequence of jgi.p|Nanoce1779_2|609413

>mRNA_9867-protein ID=mRNA_9867-protein|Name=jgi.p|Nanoce1779_2|609413|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MMLLLLLLVVIIMMGRLLLLLPQYMVVMRLQVRREVSPYSSSSFHPSSYS
CPVVDGGRKGLHVHDHLNLLPGRVSLFIDRRGFTATAATVDAFERVTPAP
ARGLLNSYL*

mRNA from alignment at scaffold_45:92554..93588+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9867 ID=mRNA_9867|Name=jgi.p|Nanoce1779_2|609413|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at scaffold_45:92554..93588+ (Nannochloropsis oceanica)
CTCCACCGCCACTGCTGCTCCTCCTGCGGCCTTTAGTTGTAGAGGCTGGG
GGGGGAGGAGGAAGGGGAGGAGGCAGGACACGTAACAGGTGGGGAGGAGG
CGGGGGGAAACTAACTGCGCCGTTGATGCCGGGAGCTGGGGAAAGGAGAG
ATGGAGGAGGTATGTGCATGGCAGGGACGGGGGTGAGGTGGCGTTGATCC
ATGGGAAGGAGGTCGTCTGGTGTGCCGGCCGGAGCGAGGGGGAGGGAAGG
AATGCCGTCGACGTGCTGGTGCTGCTGATGATGCTGCTGCTGCTGCTGCT
GGTGGTGATAATAATGATGGGGAGGTTGCTGCTTCTCCTCCCCCAGTATA
TGGTGGTGATGAGGTTGCAGGTGAGAAGGGAGGTCTCCCCCTACTCCTCC
TCCTCCTTCCATCCTTCCTCCTATTCCTGCCCCGTCGTCGACGGGGGGAG
AAAGGGATTGCATGTGCATGATCACCTTAACCTCCTGCCTGGTCGCGTCT
CCCTCTTTATTGACCGTCGTGGGTTTACTGCAACTGCTGCTACTGTTGAT
GCTTTTGAGCGAGTTACGCCTGCTCCTGCGCGTGGGTTGCTCAATAGTTA
TTTGTAAAGAGGAGGGGAGAGAAGAGCACGACAGTGCACTGCTCTCCTAC
CGCTGCCCCTGTGCTTGTTGCTGATGCCGCAGCTGCCGCTGCTTTTCCGG
TTGCTCGCCTGTCGTCTGATACAGGAAAGCGCGCGAAATGGGAGGAGAGA
GGGGGGGAAGGACAACGCTCTGCTGTCCCTGTGCTGTAGCTATTGCTGTT
GGTGCTCCTCCGTTGAGGTATTGCTCTTGGCGTCAAAGCACTGCTCAGGA
GGCGGTGTCCATGCCTCTACGTGTTAAGGTCGAGGTAGATGCACACGAAG
AGGACGAATTGCCGAGAGAAAGGGGGATGGTCGTTCACTCCGCCCGCTTT
CGCTGGTGCTGTCCCTCCTGATGGTGGCGCTGCTGATGGTACTGCTGCTG
CCGCCGCTACCACTCCTACTGCTGCGTAGCACTGT

Coding sequence (CDS) from alignment at scaffold_45:92554..93588+

>mRNA_9867 ID=mRNA_9867|Name=jgi.p|Nanoce1779_2|609413|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_45:92554..93588+ (Nannochloropsis oceanica)
ATGATGCTGCTGCTGCTGCTGCTGGTGGTGATAATAATGATGGGGAGGTT
GCTGCTTCTCCTCCCCCAGTATATGGTGGTGATGAGGTTGCAGGTGAGAA
GGGAGGTCTCCCCCTACTCCTCCTCCTCCTTCCATCCTTCCTCCTATTCC
TGCCCCGTCGTCGACGGGGGGAGAAAGGGATTGCATGTGCATGATCACCT
TAACCTCCTGCCTGGTCGCGTCTCCCTCTTTATTGACCGTCGTGGGTTTA
CTGCAACTGCTGCTACTGTTGATGCTTTTGAGCGAGTTACGCCTGCTCCT
GCGCGTGGGTTGCTCAATAGTTATTTGTAA

Synonyms

Publications