jgi.p|Nanoce1779_2|314723, mRNA_9866 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|314723
Unique NamemRNA_9866
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1872
Alignment locationscaffold_45:87715..89586 -

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Properties
Property NameValue
TranscriptId314809
TrackFilteredModels2
ProteinId314723
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:87715..89586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314723gene_9866Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314723mRNA_9866-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9866CDS_9866Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9866 ID=mRNA_9866|Name=jgi.p|Nanoce1779_2|314723|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
CTGGCCGCCTCCTTGCCTTCCTCCCCGCCCTCCCCCTCTCCTTCCCTCCC
CCTCACCTTCTGCCAGCTCCTGCTCTCTTGCTCGGCGTGTGCTCCCACGG
CTGTGGATCGGAACGGGCGCTCTGCCCTTCACTACGCCGCCGAGGCTGGA
CACGCCCACGTGGTGCGTCTGCTCCTATTGCAGGGAGGATGCGGTCCTTC
CTCCTTGGACACGTCGCTGGAAACACCGTTGCACCTGGCTAGCAGGAAGG
GTAGGAAGGAGTGTGTCCGTGCGCTCATCAGGCACGGCGCTGGGGCGTAT
ATCCGAAACAAGGACGGGAAATCCGCTTTGGATGTCGCGGGGGAAGACGA
GGAGGAGGGGGAGGGAGCGAGATACAGAGGGTGGAAAGCCAGGAGGGCAG
ACATTCGGAAGGTGATTTTCGAGGAGGAGCCGCGGGTTCAAACACTCATC
ACCTGCCACTATTCCTCCTTTTCCTCGTCCTCGTCCTCCTCCTCCACCAA
TCCAATCCCCTCCCTCCCTTTCTCTCCTCCCTCCGCATCTCCTTCACGTC
CCTCCCTCCTCTTCACCCGCCTGCAGAACGCCTCCATCTTTCCTTCATTC
CTCCTCCACCTCACGACACACGTGCCCCTCGTCCCCTTCCTCCTCGAGGA
AACCGACGAGGAAGGGGGGGAGGGCAGGAAGGAGGGAGGGCGAGGCGCCT
TGAGCAAGGTGCACACCCCCGCCTACCTCTCCTCCCTCCATGCCCTTGAT
GCCCCTCCTACAAAGTCCCCTGATCCCTTCTCCCCTCCCTCCCTCTCCGT
CTCAGAACGGCAAGCCGTTGGCGCCGTCCGTTTGGCCGTCGATCAGGTCT
GTGCCGGGCGGAAACGAAACGCCCTCTGCCTCCTTCCCCCTTCCCCCCCT
CCCTCCCTCCCTCATTCCCATCACCTCGTCGGCCCGGCTGGCCTGCCGTC
CTCCTCGTCCTCCTTGCCCTCCCTCCTGAACCCAGTGGCAGCGGCGGTGG
CCCATGCCCTTGACCGTTACGAGCGAGTGGCCGTTATTTCCCTCGCTCAC
GTCCACGCCCAAGGCACCGAGGAATGTCTCCAAAGGGTGAATGGAGGAAA
GGATAGTGGAGGGGCAGGAAGAGGAATGGCGTCGATGTTATTTTCCATCT
TTACAGAAGAGGGGGGGGGCGAGGGAGGGAGGGAGGGAGAGGAAGAGGGG
GGGAGCGTGCATCGTGTCCACGTGCTTCCCAAGAAGGCAACAGGCGAGGA
AGGGAGGGAGGGAGGGAGAGAGGAGGGGGCCTTTCGACGGATGGTGCGCG
AAGAGGTGCTGCCGGAATTGACGAAGTATTCTCCGCAATTAATTTTGTTG
TCTATAGACTTGGAGACTGTGAGTAAGGACGAGGGAGGGAGGGAGGGATG
GATGGGGTTGACAGGAAAGGAGGTCGGGGAGTTAGTGAGGCAAGTACAGA
GAGTTGCGGATGTGTGCTCTGGAGGCAAGATGGTGTGTGTGATGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGCAGTGGTGGC
GCTTGTGAATGGGTTGATAGACCCTTATATGGAGGAGGGAAAGGAAGAGG
AGGAAGCGAAGGGGGAAGAAGCGAAGGAGGAAACGAAGAAGGGAGGAAAG
GAAGAGGGGCTGGTCATGGACGCTGCCGACTGTTACAGCCGTGAGTGTAG
GACGAGTCAGTGAGGGAGGGAAGGAGGGAGGGAGGGAGGAGGGGATGGGA
AGGAGTGGGAAAGAGTGAGGAGAGGAAGGAGAGAAAGGAGGCGATTTTCC
TTTTGATTTGGAAGGAAGGACGACGGCTCATGCGTGTGTTTTTTTTTCTA
TGTCTTCCTGCATATGGTGCCT
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protein sequence of jgi.p|Nanoce1779_2|314723

>mRNA_9866-protein ID=mRNA_9866-protein|Name=jgi.p|Nanoce1779_2|314723|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
LAASLPSSPPSPSPSLPLTFCQLLLSCSACAPTAVDRNGRSALHYAAEAG
HAHVVRLLLLQGGCGPSSLDTSLETPLHLASRKGRKECVRALIRHGAGAY
IRNKDGKSALDVAGEDEEEGEGARYRGWKARRADIRKVIFEEEPRVQTLI
TCHYSSFSSSSSSSSTNPIPSLPFSPPSASPSRPSLLFTRLQNASIFPSF
LLHLTTHVPLVPFLLEETDEEGGEGRKEGGRGALSKVHTPAYLSSLHALD
APPTKSPDPFSPPSLSVSERQAVGAVRLAVDQVCAGRKRNALCLLPPSPP
PSLPHSHHLVGPAGLPSSSSSLPSLLNPVAAAVAHALDRYERVAVISLAH
VHAQGTEECLQRVNGGKDSGGAGRGMASMLFSIFTEEGGGEGGREGEEEG
GSVHRVHVLPKKATGEEGREGGREEGAFRRMVREEVLPELTKYSPQLILL
SIDLETVSKDEGGREGWMGLTGKEVGELVRQVQRVADVCSGGKMVCVMEG
GREGGREGGREGEAVVALVNGLIDPYMEEGKEEEEAKGEEAKEETKKGGK
EEGLVMDAADCYSRECRTSQ*
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mRNA from alignment at scaffold_45:87715..89586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9866 ID=mRNA_9866|Name=jgi.p|Nanoce1779_2|314723|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp|location=Sequence derived from alignment at scaffold_45:87715..89586- (Nannochloropsis oceanica)
CTGGCCGCCTCCTTGCCTTCCTCCCCGCCCTCCCCCTCTCCTTCCCTCCC
CCTCACCTTCTGCCAGCTCCTGCTCTCTTGCTCGGCGTGTGCTCCCACGG
CTGTGGATCGGAACGGGCGCTCTGCCCTTCACTACGCCGCCGAGGCTGGA
CACGCCCACGTGGTGCGTCTGCTCCTATTGCAGGGAGGATGCGGTCCTTC
CTCCTTGGACACGTCGCTGGAAACACCGTTGCACCTGGCTAGCAGGAAGG
GTAGGAAGGAGTGTGTCCGTGCGCTCATCAGGCACGGCGCTGGGGCGTAT
ATCCGAAACAAGGACGGGAAATCCGCTTTGGATGTCGCGGGGGAAGACGA
GGAGGAGGGGGAGGGAGCGAGATACAGAGGGTGGAAAGCCAGGAGGGCAG
ACATTCGGAAGGTGATTTTCGAGGAGGAGCCGCGGGTTCAAACACTCATC
ACCTGCCACTATTCCTCCTTTTCCTCGTCCTCGTCCTCCTCCTCCACCAA
TCCAATCCCCTCCCTCCCTTTCTCTCCTCCCTCCGCATCTCCTTCACGTC
CCTCCCTCCTCTTCACCCGCCTGCAGAACGCCTCCATCTTTCCTTCATTC
CTCCTCCACCTCACGACACACGTGCCCCTCGTCCCCTTCCTCCTCGAGGA
AACCGACGAGGAAGGGGGGGAGGGCAGGAAGGAGGGAGGGCGAGGCGCCT
TGAGCAAGGTGCACACCCCCGCCTACCTCTCCTCCCTCCATGCCCTTGAT
GCCCCTCCTACAAAGTCCCCTGATCCCTTCTCCCCTCCCTCCCTCTCCGT
CTCAGAACGGCAAGCCGTTGGCGCCGTCCGTTTGGCCGTCGATCAGGTCT
GTGCCGGGCGGAAACGAAACGCCCTCTGCCTCCTTCCCCCTTCCCCCCCT
CCCTCCCTCCCTCATTCCCATCACCTCGTCGGCCCGGCTGGCCTGCCGTC
CTCCTCGTCCTCCTTGCCCTCCCTCCTGAACCCAGTGGCAGCGGCGGTGG
CCCATGCCCTTGACCGTTACGAGCGAGTGGCCGTTATTTCCCTCGCTCAC
GTCCACGCCCAAGGCACCGAGGAATGTCTCCAAAGGGTGAATGGAGGAAA
GGATAGTGGAGGGGCAGGAAGAGGAATGGCGTCGATGTTATTTTCCATCT
TTACAGAAGAGGGGGGGGGCGAGGGAGGGAGGGAGGGAGAGGAAGAGGGG
GGGAGCGTGCATCGTGTCCACGTGCTTCCCAAGAAGGCAACAGGCGAGGA
AGGGAGGGAGGGAGGGAGAGAGGAGGGGGCCTTTCGACGGATGGTGCGCG
AAGAGGTGCTGCCGGAATTGACGAAGTATTCTCCGCAATTAATTTTGTTG
TCTATAGACTTGGAGACTGTGAGTAAGGACGAGGGAGGGAGGGAGGGATG
GATGGGGTTGACAGGAAAGGAGGTCGGGGAGTTAGTGAGGCAAGTACAGA
GAGTTGCGGATGTGTGCTCTGGAGGCAAGATGGTGTGTGTGATGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGCAGTGGTGGC
GCTTGTGAATGGGTTGATAGACCCTTATATGGAGGAGGGAAAGGAAGAGG
AGGAAGCGAAGGGGGAAGAAGCGAAGGAGGAAACGAAGAAGGGAGGAAAG
GAAGAGGGGCTGGTCATGGACGCTGCCGACTGTTACAGCCGTGAGTGTAG
GACGAGTCAGTGAGGGAGGGAAGGAGGGAGGGAGGGAGGAGGGGATGGGA
AGGAGTGGGAAAGAGTGAGGAGAGGAAGGAGAGAAAGGAGGCGATTTTCC
TTTTGATTTGGAAGGAAGGACGACGGCTCATGCGTGTGTTTTTTTTTCTA
TGTCTTCCTGCATATGGTGCCT
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Coding sequence (CDS) from alignment at scaffold_45:87715..89586-

>mRNA_9866 ID=mRNA_9866|Name=jgi.p|Nanoce1779_2|314723|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at scaffold_45:87715..89586- (Nannochloropsis oceanica)
CTGGCCGCCTCCTTGCCTTCCTCCCCGCCCTCCCCCTCTCCTTCCCTCCC
CCTCACCTTCTGCCAGCTCCTGCTCTCTTGCTCGGCGTGTGCTCCCACGG
CTGTGGATCGGAACGGGCGCTCTGCCCTTCACTACGCCGCCGAGGCTGGA
CACGCCCACGTGGTGCGTCTGCTCCTATTGCAGGGAGGATGCGGTCCTTC
CTCCTTGGACACGTCGCTGGAAACACCGTTGCACCTGGCTAGCAGGAAGG
GTAGGAAGGAGTGTGTCCGTGCGCTCATCAGGCACGGCGCTGGGGCGTAT
ATCCGAAACAAGGACGGGAAATCCGCTTTGGATGTCGCGGGGGAAGACGA
GGAGGAGGGGGAGGGAGCGAGATACAGAGGGTGGAAAGCCAGGAGGGCAG
ACATTCGGAAGGTGATTTTCGAGGAGGAGCCGCGGGTTCAAACACTCATC
ACCTGCCACTATTCCTCCTTTTCCTCGTCCTCGTCCTCCTCCTCCACCAA
TCCAATCCCCTCCCTCCCTTTCTCTCCTCCCTCCGCATCTCCTTCACGTC
CCTCCCTCCTCTTCACCCGCCTGCAGAACGCCTCCATCTTTCCTTCATTC
CTCCTCCACCTCACGACACACGTGCCCCTCGTCCCCTTCCTCCTCGAGGA
AACCGACGAGGAAGGGGGGGAGGGCAGGAAGGAGGGAGGGCGAGGCGCCT
TGAGCAAGGTGCACACCCCCGCCTACCTCTCCTCCCTCCATGCCCTTGAT
GCCCCTCCTACAAAGTCCCCTGATCCCTTCTCCCCTCCCTCCCTCTCCGT
CTCAGAACGGCAAGCCGTTGGCGCCGTCCGTTTGGCCGTCGATCAGGTCT
GTGCCGGGCGGAAACGAAACGCCCTCTGCCTCCTTCCCCCTTCCCCCCCT
CCCTCCCTCCCTCATTCCCATCACCTCGTCGGCCCGGCTGGCCTGCCGTC
CTCCTCGTCCTCCTTGCCCTCCCTCCTGAACCCAGTGGCAGCGGCGGTGG
CCCATGCCCTTGACCGTTACGAGCGAGTGGCCGTTATTTCCCTCGCTCAC
GTCCACGCCCAAGGCACCGAGGAATGTCTCCAAAGGGTGAATGGAGGAAA
GGATAGTGGAGGGGCAGGAAGAGGAATGGCGTCGATGTTATTTTCCATCT
TTACAGAAGAGGGGGGGGGCGAGGGAGGGAGGGAGGGAGAGGAAGAGGGG
GGGAGCGTGCATCGTGTCCACGTGCTTCCCAAGAAGGCAACAGGCGAGGA
AGGGAGGGAGGGAGGGAGAGAGGAGGGGGCCTTTCGACGGATGGTGCGCG
AAGAGGTGCTGCCGGAATTGACGAAGTATTCTCCGCAATTAATTTTGTTG
TCTATAGACTTGGAGACTGTGAGTAAGGACGAGGGAGGGAGGGAGGGATG
GATGGGGTTGACAGGAAAGGAGGTCGGGGAGTTAGTGAGGCAAGTACAGA
GAGTTGCGGATGTGTGCTCTGGAGGCAAGATGGTGTGTGTGATGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGCAGTGGTGGC
GCTTGTGAATGGGTTGATAGACCCTTATATGGAGGAGGGAAAGGAAGAGG
AGGAAGCGAAGGGGGAAGAAGCGAAGGAGGAAACGAAGAAGGGAGGAAAG
GAAGAGGGGCTGGTCATGGACGCTGCCGACTGTTACAGCCGTGAGTGTAG
GACGAGTCAGTGA
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Synonyms
Publications