jgi.p|Nanoce1779_2|674500, mRNA_9864 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674500
Unique NamemRNA_9864
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length814
Alignment locationscaffold_45:82071..84288 -

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Properties
Property NameValue
TranscriptId674586
TrackFilteredModels2
ProteinId674500
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:82071..84288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674500gene_9864Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674500mRNA_9864-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9864CDS_9864Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9864 ID=mRNA_9864|Name=jgi.p|Nanoce1779_2|674500|organism=Nannochloropsis oceanica|type=mRNA|length=814bp
GGAGGAAGAGGAAGCGAGGCAACGACGACGACGGGGGACGGGAGGTTGAC
GGAGCTGTGTATACATCAATCAATGTTTGCACACACAAACCCCTCAAACA
CTCAGAAACGCAGTCATGCCCTCACACAGCATTCACACCACAAATACGCA
CAAGTCCGGTGCAATTATCGTCGCTCCTTCGCCTCTGGGTAGCGGTCACC
ACGACAGCAAGTACCGGTACGGTATGCGCGGCGCAGCACATGCATCGTGA
TCAAGCAAGGACAGGACAAAGGCAAGGGCATTCGCTCCCGCAAAAGGCGT
CGGGTCAAACATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATT
TGGCATCATCTTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGT
GTGGACTTGGGGAGGCAAGCGCAGCAGCCCATCCTATCGCCCGGACACAT
ATCTGCAGCAGCCGAAGCAGCGGTAGCGGCAACAGCAGTCCACGATGCGC
CCGAGAAGGAGAAGTGTTTGATTCTTGTCGTGGAAGGGAGCGAAGACTCG
CTCCCGGGGAAGGCATCCCTCCTTCACTTCCTGGAGGAAGAAGGAAAAGA
GGGAGAGAGGGAGGATGGGATGACCTACATGCTGTTGGGGTCGGGCTCGG
ATGCTTACAAGACTGTCGGGTCGTGCGACCAACATTCCATCACCAGCAGC
AGCAGCAGCAGCAGCACTCACAGCAGCAGGAGCAAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAAGAATAA
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protein sequence of jgi.p|Nanoce1779_2|674500

>mRNA_9864-protein ID=mRNA_9864-protein|Name=jgi.p|Nanoce1779_2|674500|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MIATEGYESDSKNLASSSDEEKDDEYDLTCVDLGRQAQQPILSPGHISAA
AEAAVAATAVHDAPEKEKCLILVVEGSEDSLPGKASLLHFLEEEGKEGER
EDGMTYMLLGSGSDAYKTVGSCDQHSITSSSSSSSTHSSRSKEEEEEEEE
EEEEEEEEEEEEEEEKE*
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mRNA from alignment at scaffold_45:82071..84288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9864 ID=mRNA_9864|Name=jgi.p|Nanoce1779_2|674500|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at scaffold_45:82071..84288- (Nannochloropsis oceanica)
GGAGGAAGAGGAAGCGAGGCAACGACGACGACGGGGGACGGGAGGTTGAC
GGAGCTGTGTATACATCAATCAATGTTTGCACACACAAACCCCTCAAACA
CTCAGAAACGCAGTCATGCCCTCACACAGCATTCACACCACAAATACGCA
CAAGTCCGGTGCAATTATCGTCGCTCCTTCGCCTCTGGGTAGCGGTCACC
ACGACAGCAAGTACCGGTACGGTATGCGCGGCGCAGCACATGCATCGTGA
TCAAGCAAGGACAGGACAAAGGCAAGGGCATTCGCTCCCGCAAAAGGCGT
CGGGTCAAACATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATT
TGGCATCATCTTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGT
GTGGACTTGGGGAGGTACGGATGAAGGGAGGCTGGTAAAAGTCAACTGCT
TTGAGAAATGGCTGTCGTCTTTGGACGAGGATTTGATGAGACAGGGAAGA
ATGGGGGAGGGGGGAGAGGGAAAAGGAGGGATTTCCGACGGGGGGCAGGG
AGGAATATTTGTTAGGTGCCCCTAGCGTCCTTTTCACCCTTTTCCTCCTC
ATTCCCACCACTCCCTCCCCCTCGCTCTCCTCCACACCCAGGCAAGCGCA
GCAGCCCATCCTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGG
TAGCGGCAACAGCAGTAAAGAAGAACGCCTCCCATCATCGCAGTTGTCCA
ACCGAGGAAGGGAGGGTTGGATAGAGGGAGGGAAGGAGGGACAGCACCGG
TCCTGACACCTCTCTTGTGCCGGGCACTTATCTCACCCTCCTAGACCAGG
GAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGT
GAGACTTATCTCACCCTCCTAGACCAGGGAGGGAGGGAAGGAGGGAGGGA
GAGAGGGAGAGAGGGAGGGAGGGAGGGTGAGACTTATCTCACCCTCCTAG
ACCAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGCACGT
CCCATTTACTGCCGGGCTAAAGCCCACCAGGCGCACCATTAAAGCTCCCA
TTGGAAGGGCTCTTCGACCTAGAGGGAGAAAGGGAGGGAGGGAGGGAGAG
AGGGAGGAAAAGAGGATTCACCTGCTGACCCGACAGGTCCACGATGCGCC
CGAGAAGGAGAAGTGTTTGATTCTTGTCGTGGAAGGGAGCGAAGACTCGC
TCCCGGGGAAGGCATCCCTCCTTCACTTCCTGGAGGAAGAAGGAAAAGAG
GGAGAGAGGGAGGATGGGATGACCTACATGCTGTTGGGGTCGGGCTCGGA
TGCTTACAAGACTGTATGGACCAAGTCAATGCTCGTGCAGCAGCAGCAGA
AGCAGCAGAGAAGTAACAGTGATTGTCAAGCCCTCCTCCTCGCCTTCCCT
ACCCCTCCCTCCCTCCGTCCCTCCCCCTCCTCCTCCCCCACCACCGGCCA
TCACCATTTCAATCCTGACCATCAGCCCTGTCGTTCTCCCTCCCTTCCTC
GCCCCCTTCCTCCTGCCTCCAGGTCGGGTCGTGCGACCAACAGTGAGAAA
TGCAAACAGACAAGGTCGATCTGTCGTTCGATCCAATGCGGCGATGAAGG
AGGGAAGAAGAAGATGAGGGCGCCTGTGGAAAGGACAAGCAGTTGGGCTG
ACGGGGCACGATTTGAGAAGTCGGTGCAGGAGGGATGGGAAAGGAGGGAG
GGGGGAAGGAAGCGAAGGAGGAGGATGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGATGACAATGAGAGGGGAAAGATACGTCGAAAATCGGAGAATGAGT
GGAGGGAGGAAGGGAGGGAGGAAAGGAGAAGGTCACTTAATAGGAAACAG
GATACATCGGAAGAAAGGAGAAGGAGGGGAGAAAGGGGAGGGAGGGAGGG
AGGGAGGAGGGGGACATGACCCTAAGGTGGGGGAAGGGAGGGAAGGAAGG
ATGGAGTGGGTGGAGATGATGTCGGAGGGGGATAAGTATTTCTTTGACTT
GGGGTGTCAGCAGGGGGGTACAGTAGGCCCTCCTCCAGTTCCATCACCAG
CAGCAGCAGCAGCAGCAGCACTCACAGCAGCAGGAGCAAAGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGAAAGAATAA
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Coding sequence (CDS) from alignment at scaffold_45:82071..84288-

>mRNA_9864 ID=mRNA_9864|Name=jgi.p|Nanoce1779_2|674500|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_45:82071..84288- (Nannochloropsis oceanica)
TTCCATCACCAGCAGCAGCAGCAGCAGCAGCACTCACAGCAGCAGGAGCA
AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAAAGAATAAGTCGGGTCGTGCGACCAACA
GTCCACGATGCGCCCGAGAAGGAGAAGTGTTTGATTCTTGTCGTGGAAGG
GAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTCACTTCCTGGAGG
AAGAAGGAAAAGAGGGAGAGAGGGAGGATGGGATGACCTACATGCTGTTG
GGGTCGGGCTCGGATGCTTACAAGACTGCAAGCGCAGCAGCCCATCCTAT
CGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGGTAGCGGCAACAGCA
ATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTGGCATCATC
TTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGTGGACTTGG
GGAGTTCCATCACCAGCAGCAGCAGCAGCAGCAGCACTCACAGCAGCAGG
AGCAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATAAGTCGGGTCGTGCGACC
AACAGTCCACGATGCGCCCGAGAAGGAGAAGTGTTTGATTCTTGTCGTGG
AAGGGAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTCACTTCCTG
GAGGAAGAAGGAAAAGAGGGAGAGAGGGAGGATGGGATGACCTACATGCT
GTTGGGGTCGGGCTCGGATGCTTACAAGACTGCAAGCGCAGCAGCCCATC
CTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGGTAGCGGCAAC
AGCAATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTGGCAT
CATCTTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGTGGAC
TTGGGGAGTTCCATCACCAGCAGCAGCAGCAGCAGCAGCACTCACAGCAG
CAGGAGCAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATAAGTCGGGTCGTGC
GACCAACAGTCCACGATGCGCCCGAGAAGGAGAAGTGTTTGATTCTTGTC
GTGGAAGGGAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTCACTT
CCTGGAGGAAGAAGGAAAAGAGGGAGAGAGGGAGGATGGGATGACCTACA
TGCTGTTGGGGTCGGGCTCGGATGCTTACAAGACTGCAAGCGCAGCAGCC
CATCCTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGGTAGCGG
CAACAGCAATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAATTTG
GCATCATCTTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCTGTGT
GGACTTGGGGAGTTCCATCACCAGCAGCAGCAGCAGCAGCAGCACTCACA
GCAGCAGGAGCAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATAAGTCGGGTC
GTGCGACCAACAGTCCACGATGCGCCCGAGAAGGAGAAGTGTTTGATTCT
TGTCGTGGAAGGGAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTCCTTC
ACTTCCTGGAGGAAGAAGGAAAAGAGGGAGAGAGGGAGGATGGGATGACC
TACATGCTGTTGGGGTCGGGCTCGGATGCTTACAAGACTGCAAGCGCAGC
AGCCCATCCTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGCGGTA
GCGGCAACAGCAATGATTGCAACAGAGGGGTATGAGTCGGACAGCAAAAA
TTTGGCATCATCTTCGGACGAGGAGAAGGACGACGAGTATGACCTGACCT
GTGTGGACTTGGGGAGTTCCATCACCAGCAGCAGCAGCAGCAGCAGCACT
CACAGCAGCAGGAGCAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAATAAGTCG
GGTCGTGCGACCAACAGTCCACGATGCGCCCGAGAAGGAGAAGTGTTTGA
TTCTTGTCGTGGAAGGGAGCGAAGACTCGCTCCCGGGGAAGGCATCCCTC
CTTCACTTCCTGGAGGAAGAAGGAAAAGAGGGAGAGAGGGAGGATGGGAT
GACCTACATGCTGTTGGGGTCGGGCTCGGATGCTTACAAGACTGCAAGCG
CAGCAGCCCATCCTATCGCCCGGACACATATCTGCAGCAGCCGAAGCAGC
GGTAGCGGCAACAGCAATGATTGCAACAGAGGGGTATGAGTCGGACAGCA
AAAATTTGGCATCATCTTCGGACGAGGAGAAGGACGACGAGTATGACCTG
ACCTGTGTGGACTTGGGGAG
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Synonyms
Publications