jgi.p|Nanoce1779_2|609390, mRNA_9863 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609390
Unique NamemRNA_9863
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length764
Alignment locationscaffold_45:79364..80494 -

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Properties
Property NameValue
TranscriptId609476
TrackFilteredModels2
ProteinId609390
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:79364..80494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609390gene_9863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609390mRNA_9863-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9863CDS_9863Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9863 ID=mRNA_9863|Name=jgi.p|Nanoce1779_2|609390|organism=Nannochloropsis oceanica|type=mRNA|length=764bp
GCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGGAGGCAATCATCATGG
CATTCGCTGCGTACTCATCCGTTCTTGCGGCCGTTTTAGAGGCCGCGATT
GCAACGCCCGGGCGGGCTCTCCTTCTTTCCTTCGCCGCGGGCATGTTGGT
AACGGGGAGGCGGCGCCGACGCCGTCTACAACCCTTGGAGGAACGAAAGG
AACAGGAGGTAGGGGACGGGGAGGACGACGACGAGCAAGAAAGCGGGAGT
GAGAGCGAAAGCGACGGAGACAGTGAAACCGCAGCGGCCAGCGGGGGCAT
TCGTGACTTCTCCCTTCTGTCTGGTCCCTTCAAGATGGTGCTCTGTGTCA
ACATGGAACTGTCGATGGGAAAAGGCAAGATTGCTGCACAATGCGGTCAC
GCCACCCTAGGTGCTTACAAACGTGCAGCGCGGCATGCCCCCACTACATT
GCGAAGTTGGGAGTATGTTGGGCAAGCCAAGGTGTGTCTTAAAGTCCCGA
CGGGAGCAGACCTGCAACAGCTCCGCGCCTTGGCCACACGGGCGGGGTTG
GTTTCCTACCAGGTGGAAGATGCCGGACGCACGCAGATAGCTGCAGGATC
ACGGACTGTCTTAGCGATCGGTCCCGCGCCAGTGAAAGAGCTGGATAACA
TCACGGGACACTTGAAACTACTCTGACAGCGCACACAATGAGCGAATCCT
AGTACCATAAAGTATATACGAACGTATTGAAGCATGCCACATGACACTTA
AGCGTTGAAGGAAC
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protein sequence of jgi.p|Nanoce1779_2|609390

>mRNA_9863-protein ID=mRNA_9863-protein|Name=jgi.p|Nanoce1779_2|609390|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MAFAAYSSVLAAVLEAAIATPGRALLLSFAAGMLVTGRRRRRRLQPLEER
KEQEVGDGEDDDEQESGSESESDGDSETAAASGGIRDFSLLSGPFKMVLC
VNMELSMGKGKIAAQCGHATLGAYKRAARHAPTTLRSWEYVGQAKVCLKV
PTGADLQQLRALATRAGLVSYQVEDAGRTQIAAGSRTVLAIGPAPVKELD
NITGHLKLL*
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mRNA from alignment at scaffold_45:79364..80494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9863 ID=mRNA_9863|Name=jgi.p|Nanoce1779_2|609390|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at scaffold_45:79364..80494- (Nannochloropsis oceanica)
GCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGGAGGCAATCATCATGG
CATTCGCTGCGTACTCATCCGTTCTTGCGGCCGTTTTAGAGGCCGCGATT
GCAACGCCCGGGCGGGCTCTCCTTCTTTCCTTCGCCGCGGGCATGTTGGT
AACGGGGTGTGTGCTGCCCATGGGGGGGGGGGAGGAGGCGGCGCCGACGC
CGTCTACAACCCTTGGAGGAACGAAAGGAACAGGAGGTAGGGGACGGGGA
GGACGACGACGAGCAAGAAAGCGGGAGTGAGAGCGAAAGCGACGGAGACA
GTGAAACCGCAGCGGCCAGCGGGGGCATTCGTGACTTCTCCCTTCTGTCT
GGTCCCTTCAAGATGGTGCTCTGTGTCAACATGGAACTGTCGATGGGAAA
AGGCAAGATTGCTGCACAATGCGGTCACGCCACCCTAGGTGCTTACAAAC
GTGCAGCGCGGCATGCCCCCACTACATTGCGAAGTTGGGAGTATGTTGGG
TGAGTGTGGGATGGAGGAAGGGAAGGCAAGATGAAGAGAGGGCAGGGATT
GTACGGATGCGCGAAAGCATGCTTGCAAGATGCTACGTGTGGTGTGGTAG
CACAGGGCTTTATCCGCCGTATTAAAAAGAAGTCATGGTATCGGATCGAA
TGCACTAATTTCAAAATACAGGTCAGGCTTCCCTCCAGTGTGTGGACGTC
GATGACCGTTCGTGTTCGCTGTGCGACTGCAAAAGCATGGCGCCCTGACC
TGTCGGAGAACATATGTCCATGTGTGGATGTATTTGTGTAATGATCCTTC
AATGCATCATATTGTCCTTCCTCTTTTCCTTCCCTCAGGCAAGCCAAGGT
GTGTCTTAAAGTCCCGACGGGAGCAGACCTGCAACAGCTCCGCGCCTTGG
CCACACGGGCGGGGTTGGTTTCCTACCAGGTGGAAGATGCCGGACGCACG
CAGATAGCTGCAGGATCACGGACTGTCTTAGCGATCGGTCCCGCGCCAGT
GAAAGAGCTGGATAACATCACGGGACACTTGAAACTACTCTGACAGCGCA
CACAATGAGCGAATCCTAGTACCATAAAGTATATACGAACGTATTGAAGC
ATGCCACATGACACTTAAGCGTTGAAGGAAC
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Coding sequence (CDS) from alignment at scaffold_45:79364..80494-

>mRNA_9863 ID=mRNA_9863|Name=jgi.p|Nanoce1779_2|609390|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_45:79364..80494- (Nannochloropsis oceanica)
GCAAGCCAAGGTGTGTCTTAAAGTCCCGACGGGAGCAGACCTGCAACAGC
TCCGCGCCTTGGCCACACGGGCGGGGTTGGTTTCCTACCAGGTGGAAGAT
GCCGGACGCACGCAGATAGCTGCAGGATCACGGACTGTCTTAGCGATCGG
TCCCGCGCCAGTGAAAGAGCTGGATAACATCACGGGACACTTGAAACTAC
TCTGAGAGGCGGCGCCGACGCCGTCTACAACCCTTGGAGGAACGAAAGGA
ACAGGAGGTAGGGGACGGGGAGGACGACGACGAGCAAGAAAGCGGGAGTG
AGAGCGAAAGCGACGGAGACAGTGAAACCGCAGCGGCCAGCGGGGGCATT
CGTGACTTCTCCCTTCTGTCTGGTCCCTTCAAGATGGTGCTCTGTGTCAA
CATGGAACTGTCGATGGGAAAAGGCAAGATTGCTGCACAATGCGGTCACG
CCACCCTAGGTGCTTACAAACGTGCAGCGCGGCATGCCCCCACTACATTG
CGAAGTTGGGAGTATGTTGGATGGCATTCGCTGCGTACTCATCCGTTCTT
GCGGCCGTTTTAGAGGCCGCGATTGCAACGCCCGGGCGGGCTCTCCTTCT
TTCCTTCGCCGCGGGCATGTTGGTAACGGGGCAAGCCAAGGTGTGTCTTA
AAGTCCCGACGGGAGCAGACCTGCAACAGCTCCGCGCCTTGGCCACACGG
GCGGGGTTGGTTTCCTACCAGGTGGAAGATGCCGGACGCACGCAGATAGC
TGCAGGATCACGGACTGTCTTAGCGATCGGTCCCGCGCCAGTGAAAGAGC
TGGATAACATCACGGGACACTTGAAACTACTCTGAGAGGCGGCGCCGACG
CCGTCTACAACCCTTGGAGGAACGAAAGGAACAGGAGGTAGGGGACGGGG
AGGACGACGACGAGCAAGAAAGCGGGAGTGAGAGCGAAAGCGACGGAGAC
AGTGAAACCGCAGCGGCCAGCGGGGGCATTCGTGACTTCTCCCTTCTGTC
TGGTCCCTTCAAGATGGTGCTCTGTGTCAACATGGAACTGTCGATGGGAA
AAGGCAAGATTGCTGCACAATGCGGTCACGCCACCCTAGGTGCTTACAAA
CGTGCAGCGCGGCATGCCCCCACTACATTGCGAAGTTGGGAGTATGTTGG
ATGGCATTCGCTGCGTACTCATCCGTTCTTGCGGCCGTTTTAGAGGCCGC
GATTGCAACGCCCGGGCGGGCTCTCCTTCTTTCCTTCGCCGCGGGCATGT
TGGTAACGGGGCAAGCCAAGGTGTGTCTTAAAGTCCCGACGGGAGCAGAC
CTGCAACAGCTCCGCGCCTTGGCCACACGGGCGGGGTTGGTTTCCTACCA
GGTGGAAGATGCCGGACGCACGCAGATAGCTGCAGGATCACGGACTGTCT
TAGCGATCGGTCCCGCGCCAGTGAAAGAGCTGGATAACATCACGGGACAC
TTGAAACTACTCTGAGAGGCGGCGCCGACGCCGTCTACAACCCTTGGAGG
AACGAAAGGAACAGGAGGTAGGGGACGGGGAGGACGACGACGAGCAAGAA
AGCGGGAGTGAGAGCGAAAGCGACGGAGACAGTGAAACCGCAGCGGCCAG
CGGGGGCATTCGTGACTTCTCCCTTCTGTCTGGTCCCTTCAAGATGGTGC
TCTGTGTCAACATGGAACTGTCGATGGGAAAAGGCAAGATTGCTGCACAA
TGCGGTCACGCCACCCTAGGTGCTTACAAACGTGCAGCGCGGCATGCCCC
CACTACATTGCGAAGTTGGGAGTATGTTGGATGGCATTCGCTGCGTACTC
ATCCGTTCTTGCGGCCGTTTTAGAGGCCGCGATTGCAACGCCCGGGCGGG
CTCTCCTTCTTTCCTTCGCCGCGGGCATGTTGGTAACGGG
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Synonyms
Publications