jgi.p|Nanoce1779_2|609388, mRNA_9862 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609388
Unique NamemRNA_9862
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length664
Alignment locationscaffold_45:78694..79357 -

Link to JBrowse

Properties
Property NameValue
TranscriptId609474
TrackFilteredModels2
ProteinId609388
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:78694..79357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609388gene_9862Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609388mRNA_9862-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9862CDS_9862Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9862 ID=mRNA_9862|Name=jgi.p|Nanoce1779_2|609388|organism=Nannochloropsis oceanica|type=mRNA|length=664bp
TCGTTTCGTTCTTATGCTTGGTTTGCCCGTTCCATTTTTGGTTTTCTCTT
CGTTTATCGTTTTTCTTCAAATCTGTCCTCTATTTTTCACAAAATCTGTG
GCATTGTCTTTATGCAATCATCCGTGTTTCACGGTTCGTCGTGCATATCC
CCCCATCCCCCTTTCCTTGTCCGCTAGGACCATAGGGGACCAGATATTTA
CATCCTCTTCTTGTTTCCTCTTATTGTTTCCTCTTATTGTTCGGACACTC
TTTCCGACCGCGGGTGGAGGAGGGGAGGAAGGGAAGAAAAGAGGGGGAGG
GAAGGAGAATGTGCCTCGCCCCTCCTGTGTCTTCTACCAATGGAACACCT
CCTCGTGCATTGCTATCCTCTCTTTTGCTTCTTGCAACTCCATCACTGCG
TTGCGAGCCTCCACAAGCATGGAATCCGGGCCACATACCACCACCCCTTT
CTCCCCCCCGTCCTCCTTCCCTCCTTCCCGCGATTCACTCCATTTTTTGA
CCATCGTTCTCACTTCCGGTCGCCCACAGTCGTAGACTAATCCTCCTTCC
GTCACGCCTCCTCGCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCGCCCGT
CACATACAGCCGAAGGGTGAATGAGAAGGAAGGAGGGAGGGAGGGCGAGA
ATTTCGCCCGCACA
back to top

protein sequence of jgi.p|Nanoce1779_2|609388

>mRNA_9862-protein ID=mRNA_9862-protein|Name=jgi.p|Nanoce1779_2|609388|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MLGLPVPFLVFSSFIVFLQICPLFFTKSVALSLCNHPCFTVRRAYPPIPL
SLSARTIGDQIFTSSSCFLLLFPLIVRTLFPTAGGGGEEGKKRGGGKENV
PRPSCVFYQWNTSSCIAILSFASCNSITALRASTSMESGPHTTTPFSPPS
SFPPSRDSLHFLTIVLTSGRPQS*
back to top

mRNA from alignment at scaffold_45:78694..79357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9862 ID=mRNA_9862|Name=jgi.p|Nanoce1779_2|609388|organism=Nannochloropsis oceanica|type=mRNA|length=664bp|location=Sequence derived from alignment at scaffold_45:78694..79357- (Nannochloropsis oceanica)
TCGTTTCGTTCTTATGCTTGGTTTGCCCGTTCCATTTTTGGTTTTCTCTT
CGTTTATCGTTTTTCTTCAAATCTGTCCTCTATTTTTCACAAAATCTGTG
GCATTGTCTTTATGCAATCATCCGTGTTTCACGGTTCGTCGTGCATATCC
CCCCATCCCCCTTTCCTTGTCCGCTAGGACCATAGGGGACCAGATATTTA
CATCCTCTTCTTGTTTCCTCTTATTGTTTCCTCTTATTGTTCGGACACTC
TTTCCGACCGCGGGTGGAGGAGGGGAGGAAGGGAAGAAAAGAGGGGGAGG
GAAGGAGAATGTGCCTCGCCCCTCCTGTGTCTTCTACCAATGGAACACCT
CCTCGTGCATTGCTATCCTCTCTTTTGCTTCTTGCAACTCCATCACTGCG
TTGCGAGCCTCCACAAGCATGGAATCCGGGCCACATACCACCACCCCTTT
CTCCCCCCCGTCCTCCTTCCCTCCTTCCCGCGATTCACTCCATTTTTTGA
CCATCGTTCTCACTTCCGGTCGCCCACAGTCGTAGACTAATCCTCCTTCC
GTCACGCCTCCTCGCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCGCCCGT
CACATACAGCCGAAGGGTGAATGAGAAGGAAGGAGGGAGGGAGGGCGAGA
ATTTCGCCCGCACA
back to top

Coding sequence (CDS) from alignment at scaffold_45:78694..79357-

>mRNA_9862 ID=mRNA_9862|Name=jgi.p|Nanoce1779_2|609388|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_45:78694..79357- (Nannochloropsis oceanica)
ATGCTTGGTTTGCCCGTTCCATTTTTGGTTTTCTCTTCGTTTATCGTTTT
TCTTCAAATCTGTCCTCTATTTTTCACAAAATCTGTGGCATTGTCTTTAT
GCAATCATCCGTGTTTCACGGTTCGTCGTGCATATCCCCCCATCCCCCTT
TCCTTGTCCGCTAGGACCATAGGGGACCAGATATTTACATCCTCTTCTTG
TTTCCTCTTATTGTTTCCTCTTATTGTTCGGACACTCTTTCCGACCGCGG
GTGGAGGAGGGGAGGAAGGGAAGAAAAGAGGGGGAGGGAAGGAGAATGTG
CCTCGCCCCTCCTGTGTCTTCTACCAATGGAACACCTCCTCGTGCATTGC
TATCCTCTCTTTTGCTTCTTGCAACTCCATCACTGCGTTGCGAGCCTCCA
CAAGCATGGAATCCGGGCCACATACCACCACCCCTTTCTCCCCCCCGTCC
TCCTTCCCTCCTTCCCGCGATTCACTCCATTTTTTGACCATCGTTCTCAC
TTCCGGTCGCCCACAGTCGTAG
back to top
Synonyms
Publications