jgi.p|Nanoce1779_2|574904, mRNA_986 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574904
Unique Name	mRNA_986
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1320
Alignment location	scaffold_2:935142..936740 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574990
Track	FilteredModels2
ProteinId	574904

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:935142..936740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574904	gene_986	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574904	mRNA_986-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_986	CDS_986	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:935142..936740+
coding sequence from alignment at scaffold_2:935142..936740+

mRNA sequence

>mRNA_986 ID=mRNA_986|Name=jgi.p|Nanoce1779_2|574904|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ACAGGCACATCTCCTCCGCCCCTTCCACAGCAGCATGTCTTTCTTCAGAC
AATCGGCTGGCGCCCTGCTTCTGCTGCCCTTTATTGCCGGTGCTTTTGTC
GTGCCAGGCATTGCACCTCGTCGTAACAGCATGGTGCGCATGAACGCAGG
AAGCGTGAAGCCGGTACGGATCGGGACGCGAGGGTCACCCTTGGCTTTGG
CGCAGGCCTACGAGACCAAACGAAGACTAGGTGAAGCCTTCCCCGAGCTA
GCTCCGGAGGGGATGGTCGAGATCAAAATCATCAAGACTACGGGAGACAT
GATTCTGGATAAGGCCTTGTCGGAGATTGGGGGCAAGGGTCTATTTACCA
AGGAGCTGGACGTCGCATTGCTGGGGCAAGAAGTTGATATTTGTGTGCAT
TCTATGAAGGACGTCCCTACCTGGCTTCCGGACGGCACCGTGCTTCCCTG
CAACTTACCTCGGGAGGATTCCCGGGATGTGTTCATTTGTAATAAGGCGA
AGTCAATTTCGGAACTACCGGCGGGGTCAGTGATTGGCTCGGCGTCTTTG
AGGCGACAAGCGCAGATCTTGGCGCGGAATCCTAATGTGAAGGTGGTGAA
CTTCCGGGGCAATGTCCAAACGCGGCTTAGGAAGCTGAGCGAAGGAGTAG
TGGATGCCACGATGTTGGCGGTGGCGGGGTTGAACAGGATGAACATGCAA
GATTGCGTTACCTCGATCTTGGACTGGGATGAGATGTTGCCCGCGGTGGC
GCAGGGGGCGATCGGCATCCAATGTCGGTCGGATGATGAACTTTCTTTGA
AGTACTTGGCTGCCTTAAACCACCCGGAGACAAAAGTTTGCATTGATTGC
GAGCGGTCGTTTTTGGCGGAGCTGGACGGGAATTGTAAGACCCCGATTGC
GGGCCAAGCGAAGGTGATTGATGGGAAGCTGCATTTTAAGGGCCTGGTCT
CCATGCCGGACGGCACCAAGATGTACGAAACGGATCGTGTGGGTGAGCTG
GCTGATGCAGTGAAGATCGGTAAAGAAGCGGGACAGGAGCTGAAAGAGAG
GGCAGGGCCGGAGTTTTTTAAGGCCTTATATGCTGCGATCCCTGCGCCGG
CGACGCCCAAGCCAGCTAGTGTGTCCTAATAAAAAGGGGTCGAGAATGAG
ATCAGGAAACGGCAGGGAGGGGTCAGAGATAGGAAGGTAGAGAGGCTAAA
AGGGAAAATAAGAGGTCAAGGAGAACGAGGATGACATGAGAAAGAAGGAG
GATGAGGAGGAGGAGGAGGAGGAGGAGGAATTGGAGGATAAAAGACATAC
GAATACCAATGAGATCTCGT

protein sequence of jgi.p|Nanoce1779_2|574904

>mRNA_986-protein ID=mRNA_986-protein|Name=jgi.p|Nanoce1779_2|574904|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MSFFRQSAGALLLLPFIAGAFVVPGIAPRRNSMVRMNAGSVKPVRIGTRG
SPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGG
KGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVF
ICNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRK
LSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSD
DELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLH
FKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYA
AIPAPATPKPASVS*

mRNA from alignment at scaffold_2:935142..936740+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_986 ID=mRNA_986|Name=jgi.p|Nanoce1779_2|574904|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_2:935142..936740+ (Nannochloropsis oceanica)
ACAGGCACATCTCCTCCGCCCCTTCCACAGCAGCATGTCTTTCTTCAGAC
AATCGGCTGGCGCCCTGCTTCTGCTGCCCTTTATTGCCGGTGCTTTTGTC
GTGCCAGGTAAGAGCAGGAAGGATCATAGGTTGGGGAGGCGAAGGCATGG
GGCTGGGAGGAGAGAGGGAATGAAAAATAGATAAGCTTTCCCTAGGCTCC
TATAAAGCAACTGTTAAGATCTATGCTATCGTTTCTGTGTGATAGTGTCC
TGTGTGGACACCACTTCAGGTGACGTGAAAGGTATCAAAGATGAGGCGGC
ACGATCCTTTCTTTTGTTCCATCTCAAGCCGTGCACGACATCTCACCACC
TCCCTCCTGCTTCCTTCCTTCTTTCCATGATCATAGGCATTGCACCTCGT
CGTAACAGCATGGTGCGCATGAACGCAGGAAGCGTGAAGCCGGTACGGAT
CGGGACGCGAGGGTCACCCTTGGCTTTGGCGCAGGCCTACGAGACCAAAC
GAAGACTAGGTGAAGCCTTCCCCGAGCTAGCTCCGGAGGGGATGGTCGAG
ATCAAAATCATCAAGACTACGGGAGACATGATTCTGGATAAGGCCTTGTC
GGAGATTGGGGGCAAGGGTCTATTTACCAAGGAGCTGGACGTCGCATTGC
TGGGGCAAGAAGTTGATATTTGTGTGCATTCTATGAAGGACGTCCCTACC
TGGCTTCCGGACGGCACCGTGCTTCCCTGCAACTTACCTCGGGAGGATTC
CCGGGATGTGTTCATTTGTAATAAGGCGAAGTCAATTTCGGAACTACCGG
CGGGGTCAGTGATTGGCTCGGCGTCTTTGAGGCGACAAGCGCAGATCTTG
GCGCGGAATCCTAATGTGAAGGTGGTGAACTTCCGGGGCAATGTCCAAAC
GCGGCTTAGGAAGCTGAGCGAAGGAGTAGTGGATGCCACGATGTTGGCGG
TGGCGGGGTTGAACAGGATGAACATGCAAGATTGCGTTACCTCGATCTTG
GACTGGGATGAGATGTTGCCCGCGGTGGCGCAGGGGGCGATCGGCATCCA
ATGTCGGTCGGATGATGAACTTTCTTTGAAGTACTTGGCTGCCTTAAACC
ACCCGGAGACAAAAGTTTGCATTGATTGCGAGCGGTCGTTTTTGGCGGAG
CTGGACGGGAATTGTAAGACCCCGATTGCGGGCCAAGCGAAGGTGATTGA
TGGGAAGCTGCATTTTAAGGGCCTGGTCTCCATGCCGGACGGCACCAAGA
TGTACGAAACGGATCGTGTGGGTGAGCTGGCTGATGCAGTGAAGATCGGT
AAAGAAGCGGGACAGGAGCTGAAAGAGAGGGCAGGGCCGGAGTTTTTTAA
GGCCTTATATGCTGCGATCCCTGCGCCGGCGACGCCCAAGCCAGCTAGTG
TGTCCTAATAAAAAGGGGTCGAGAATGAGATCAGGAAACGGCAGGGAGGG
GTCAGAGATAGGAAGGTAGAGAGGCTAAAAGGGAAAATAAGAGGTCAAGG
AGAACGAGGATGACATGAGAAAGAAGGAGGATGAGGAGGAGGAGGAGGAG
GAGGAGGAATTGGAGGATAAAAGACATACGAATACCAATGAGATCTCGT

Coding sequence (CDS) from alignment at scaffold_2:935142..936740+

>mRNA_986 ID=mRNA_986|Name=jgi.p|Nanoce1779_2|574904|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_2:935142..936740+ (Nannochloropsis oceanica)
ATGTCTTTCTTCAGACAATCGGCTGGCGCCCTGCTTCTGCTGCCCTTTAT
TGCCGGTGCTTTTGTCGTGCCAGGCATTGCACCTCGTCGTAACAGCATGG
TGCGCATGAACGCAGGAAGCGTGAAGCCGGTACGGATCGGGACGCGAGGG
TCACCCTTGGCTTTGGCGCAGGCCTACGAGACCAAACGAAGACTAGGTGA
AGCCTTCCCCGAGCTAGCTCCGGAGGGGATGGTCGAGATCAAAATCATCA
AGACTACGGGAGACATGATTCTGGATAAGGCCTTGTCGGAGATTGGGGGC
AAGGGTCTATTTACCAAGGAGCTGGACGTCGCATTGCTGGGGCAAGAAGT
TGATATTTGTGTGCATTCTATGAAGGACGTCCCTACCTGGCTTCCGGACG
GCACCGTGCTTCCCTGCAACTTACCTCGGGAGGATTCCCGGGATGTGTTC
ATTTGTAATAAGGCGAAGTCAATTTCGGAACTACCGGCGGGGTCAGTGAT
TGGCTCGGCGTCTTTGAGGCGACAAGCGCAGATCTTGGCGCGGAATCCTA
ATGTGAAGGTGGTGAACTTCCGGGGCAATGTCCAAACGCGGCTTAGGAAG
CTGAGCGAAGGAGTAGTGGATGCCACGATGTTGGCGGTGGCGGGGTTGAA
CAGGATGAACATGCAAGATTGCGTTACCTCGATCTTGGACTGGGATGAGA
TGTTGCCCGCGGTGGCGCAGGGGGCGATCGGCATCCAATGTCGGTCGGAT
GATGAACTTTCTTTGAAGTACTTGGCTGCCTTAAACCACCCGGAGACAAA
AGTTTGCATTGATTGCGAGCGGTCGTTTTTGGCGGAGCTGGACGGGAATT
GTAAGACCCCGATTGCGGGCCAAGCGAAGGTGATTGATGGGAAGCTGCAT
TTTAAGGGCCTGGTCTCCATGCCGGACGGCACCAAGATGTACGAAACGGA
TCGTGTGGGTGAGCTGGCTGATGCAGTGAAGATCGGTAAAGAAGCGGGAC
AGGAGCTGAAAGAGAGGGCAGGGCCGGAGTTTTTTAAGGCCTTATATGCT
GCGATCCCTGCGCCGGCGACGCCCAAGCCAGCTAGTGTGTCCTAAATGTC
TTTCTTCAGACAATCGGCTGGCGCCCTGCTTCTGCTGCCCTTTATTGCCG
GTGCTTTTGTCGTGCCAGGCATTGCACCTCGTCGTAACAGCATGGTGCGC
ATGAACGCAGGAAGCGTGAAGCCGGTACGGATCGGGACGCGAGGGTCACC
CTTGGCTTTGGCGCAGGCCTACGAGACCAAACGAAGACTAGGTGAAGCCT
TCCCCGAGCTAGCTCCGGAGGGGATGGTCGAGATCAAAATCATCAAGACT
ACGGGAGACATGATTCTGGATAAGGCCTTGTCGGAGATTGGGGGCAAGGG
TCTATTTACCAAGGAGCTGGACGTCGCATTGCTGGGGCAAGAAGTTGATA
TTTGTGTGCATTCTATGAAGGACGTCCCTACCTGGCTTCCGGACGGCACC
GTGCTTCCCTGCAACTTACCTCGGGAGGATTCCCGGGATGTGTTCATTTG
TAATAAGGCGAAGTCAATTTCGGAACTACCGGCGGGGTCAGTGATTGGCT
CGGCGTCTTTGAGGCGACAAGCGCAGATCTTGGCGCGGAATCCTAATGTG
AAGGTGGTGAACTTCCGGGGCAATGTCCAAACGCGGCTTAGGAAGCTGAG
CGAAGGAGTAGTGGATGCCACGATGTTGGCGGTGGCGGGGTTGAACAGGA
TGAACATGCAAGATTGCGTTACCTCGATCTTGGACTGGGATGAGATGTTG
CCCGCGGTGGCGCAGGGGGCGATCGGCATCCAATGTCGGTCGGATGATGA
ACTTTCTTTGAAGTACTTGGCTGCCTTAAACCACCCGGAGACAAAAGTTT
GCATTGATTGCGAGCGGTCGTTTTTGGCGGAGCTGGACGGGAATTGTAAG
ACCCCGATTGCGGGCCAAGCGAAGGTGATTGATGGGAAGCTGCATTTTAA
GGGCCTGGTCTCCATGCCGGACGGCACCAAGATGTACGAAACGGATCGTG
TGGGTGAGCTGGCTGATGCAGTGAAGATCGGTAAAGAAGCGGGACAGGAG
CTGAAAGAGAGGGCAGGGCCGGAGTTTTTTAAGGCCTTATATGCTGCGAT
CCCTGCGCCGGCGACGCCCAAGCCAGCTAGTGTGTCCTAA

Synonyms

Publications