jgi.p|Nanoce1779_2|609376, mRNA_9858 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609376
Unique NamemRNA_9858
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1285
Alignment locationscaffold_45:63426..65255 -

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Properties
Property NameValue
TranscriptId609462
TrackFilteredModels2
ProteinId609376
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:63426..65255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609376gene_9858Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609376mRNA_9858-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9858CDS_9858Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9858 ID=mRNA_9858|Name=jgi.p|Nanoce1779_2|609376|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp
ACAGCAGCACCATGCGTGCCGCCCTCCATCTCCTCTTTCCGCTCTTCCTC
CTTCTTGTCTCCCCAACCACCAACCTGGCTGCTGAACGGGATCTCTTTAC
CAGCGACAAAGACAGGAAGGCAAATGACTCCGCCCTCCCATCCAAGGCCC
AAATCAGGGCATCCAAGAGAGGCTGCGTTCTCAAGTTCTACCCTCTGAAG
CCCAAGACACCCTGGCCTACCACGGCCAGCCCTGATCAAACGTACCGTTT
GGCCTTCAAATTGATCAATCGCAGCAAGAAAGCGGGGTCGGACTTTAAGA
GTGTTTGGCTAGGCATTCAAAAGCCTCCCGGCGCAAACTTTACAGGAAGC
TTCCGTGCCAGGCCTGCCCTACCCGATGCGACCTTCTTCCCCAATTTTCC
CAATCAATTCGTCCCTCTCTTCCTCTGGGGACCTTTCGACGTGCCTCCCC
GGAGGAAGCAATACATCGATTTTGAGTATACCCTCCCGGTGTGCTCGCCG
GGGATAGCCTGGAATATTACGGTGAATCTCTCTCCGACCATTAATACGGG
CTTTCAACGCGTCCCTCCCTTCACAGGGGCGTGTGGCACGGGCTACAGTT
ATCGGCGCCAGTACTACAGCAAAAGAAACATCCCATGCACCTAAAGCGGA
TGCTAGGAGGGTAAGAGGGAGGGAAGAGGAAGCAGCAGCAGAGTTAAGGA
CTCGTTTTTCAAGGGGGAAGGTAGGCGGCCCTTAGGAGGGGCGTTTGTAT
AAGCGGGAGACTGCTTATCGTACTCATGCATCGATGTGGTTGTGTAAACG
TATGGGTGCACGAGAGAGAGAGAGGAGTATTCTGAAGTGGCGCAAGTGCG
CGTGCTTGCATGAAAGAGGAGGATCATGGGGAAAAGGCAGTGACTGGGTT
GAGGGCGTTGTTTATATATCTAGTGTGATTGAAACTGTGTTTTAAAAGTA
CCCTTTTTCGTAGTTCCCCATGTCAGCTTTCAGCCGCCAGTAAAAGAATG
TAGAAGTATTGAAAAATCACCCACCGACTGCCTATCTAAAAGATAAAGAG
AAGAGTGTAAAGAAAAAGATGAGGAGCTGAGGGAGGGAAGGAAGGGAATG
CGGGACCATGGAAAGCTTCATGCGAAATCTGACTGTGGTACTTCCTGTCC
TATCACTCCTGCCCTTCTTTCGACAAACACAATTTATGCCCTACCGATCC
TCCTACTCTCCTTTTTTCTCTCCCCATATTCCCTTTCCCCGCTCGCTCTC
AAATATGCTATTCCTTCACCTTATGATGCTTATCG
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protein sequence of jgi.p|Nanoce1779_2|609376

>mRNA_9858-protein ID=mRNA_9858-protein|Name=jgi.p|Nanoce1779_2|609376|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRAALHLLFPLFLLLVSPTTNLAAERDLFTSDKDRKANDSALPSKAQIRA
SKRGCVLKFYPLKPKTPWPTTASPDQTYRLAFKLINRSKKAGSDFKSVWL
GIQKPPGANFTGSFRARPALPDATFFPNFPNQFVPLFLWGPFDVPPRRKQ
YIDFEYTLPVCSPGIAWNITVNLSPTINTGFQRVPPFTGACGTGYSYRRQ
YYSKRNIPCT*
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mRNA from alignment at scaffold_45:63426..65255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9858 ID=mRNA_9858|Name=jgi.p|Nanoce1779_2|609376|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp|location=Sequence derived from alignment at scaffold_45:63426..65255- (Nannochloropsis oceanica)
ACAGCAGCACCATGCGTGCCGCCCTCCATCTCCTCTTTCCGCTCTTCCTC
CTTCTTGTCTCCCCAACCACCAACCTGGCTGCTGAACGGGATCTCTTTAC
CAGCGACAAAGACAGGAAGGCAAATGACTCCGCCCTCCCATCCAAGGCCC
AAATCAGGGCATCCAAGAGAGGCTGCGTTCTCAAGTTCTACCCTCTGAAG
CCCAAGACACCCTGGCCTACCACGGCCAGCCCTGATCAAACGTACCGTTT
GGCCTTCAAATTGATCAATCGCAGCAAGAAAGCGGGGTCGGACTTTAAGA
GTGTTTGGCTAGGCATTCAAAAGCCTCCCGGCGCAAACTTTACAGGAAGC
TTCCGTGCCAGGCCTGCCCTACCCGATGCGACCTTCTTCCCCAATTTTCC
CAATCAATTCGTCCCTCTCTTCCTCTGGGGACCTTTCGACGTGCCTCCCC
GGAGGAAGCAATACATCGATTTTGAGTATACCCTCCCGGTGTGCTCGCCG
GGGATAGCCTGGAATATTACGGTGAATCTCTCTCCGACCATTAATACGGG
CTTTCAACGCGTCCCTCCCTTCACAGGGGCGTGTGGCACGGGCTACAGTT
ATCGGGTACGTTCGAGGAAAAGAATGGGAGGGTGGTAAGGAAAGAAGTAG
GATGCGTGGGAGGGAGGAGGGAGGGAGGGAGAGAAGGATGGAGAGGGGGA
TGGAGAGGGGGATGGAGGGAGAGAGGGAGAGAGGCACGGATGAGTGTCAT
TTCCGTGGTCTCTTTTGATGTTTCTCTATTGTCTCTCTGTGTGTGTGGTA
TGGGCTATAGATCGAGCAGACCTCATAAGTTTCAGGTCCTGCATCCCCGC
CCTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTTTCACCA
CCTGCACTTTTTCCCTGTTTTTCTCTGCCCCGGACGTGGACTTTTTTTTC
CAATCTGTTGGTAGGGCATGCATTCCGATCAAAAGCCTTACATCATGATA
TAGCTCATCTGCCCTTCCCTCCCTCCTTCCCTTCCTTCCTTCCTTTCCTC
TCTTTCCTTTCCTTTCTTTCTCCCCACATTTACACTTATGACTCACCCTC
CCCTCCCTTCCTCCCTTCCTCCTTCCCTCTTTCACTCCTTTCATTAACAG
CGCCAGTACTACAGCAAAAGAAACATCCCATGCACCTAAAGCGGATGCTA
GGAGGGTAAGAGGGAGGGAAGAGGAAGCAGCAGCAGAGTTAAGGACTCGT
TTTTCAAGGGGGAAGGTAGGCGGCCCTTAGGAGGGGCGTTTGTATAAGCG
GGAGACTGCTTATCGTACTCATGCATCGATGTGGTTGTGTAAACGTATGG
GTGCACGAGAGAGAGAGAGGAGTATTCTGAAGTGGCGCAAGTGCGCGTGC
TTGCATGAAAGAGGAGGATCATGGGGAAAAGGCAGTGACTGGGTTGAGGG
CGTTGTTTATATATCTAGTGTGATTGAAACTGTGTTTTAAAAGTACCCTT
TTTCGTAGTTCCCCATGTCAGCTTTCAGCCGCCAGTAAAAGAATGTAGAA
GTATTGAAAAATCACCCACCGACTGCCTATCTAAAAGATAAAGAGAAGAG
TGTAAAGAAAAAGATGAGGAGCTGAGGGAGGGAAGGAAGGGAATGCGGGA
CCATGGAAAGCTTCATGCGAAATCTGACTGTGGTACTTCCTGTCCTATCA
CTCCTGCCCTTCTTTCGACAAACACAATTTATGCCCTACCGATCCTCCTA
CTCTCCTTTTTTCTCTCCCCATATTCCCTTTCCCCGCTCGCTCTCAAATA
TGCTATTCCTTCACCTTATGATGCTTATCG
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Coding sequence (CDS) from alignment at scaffold_45:63426..65255-

>mRNA_9858 ID=mRNA_9858|Name=jgi.p|Nanoce1779_2|609376|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_45:63426..65255- (Nannochloropsis oceanica)
CGCCAGTACTACAGCAAAAGAAACATCCCATGCACCTAAATGCGTGCCGC
CCTCCATCTCCTCTTTCCGCTCTTCCTCCTTCTTGTCTCCCCAACCACCA
ACCTGGCTGCTGAACGGGATCTCTTTACCAGCGACAAAGACAGGAAGGCA
AATGACTCCGCCCTCCCATCCAAGGCCCAAATCAGGGCATCCAAGAGAGG
CTGCGTTCTCAAGTTCTACCCTCTGAAGCCCAAGACACCCTGGCCTACCA
CGGCCAGCCCTGATCAAACGTACCGTTTGGCCTTCAAATTGATCAATCGC
AGCAAGAAAGCGGGGTCGGACTTTAAGAGTGTTTGGCTAGGCATTCAAAA
GCCTCCCGGCGCAAACTTTACAGGAAGCTTCCGTGCCAGGCCTGCCCTAC
CCGATGCGACCTTCTTCCCCAATTTTCCCAATCAATTCGTCCCTCTCTTC
CTCTGGGGACCTTTCGACGTGCCTCCCCGGAGGAAGCAATACATCGATTT
TGAGTATACCCTCCCGGTGTGCTCGCCGGGGATAGCCTGGAATATTACGG
TGAATCTCTCTCCGACCATTAATACGGGCTTTCAACGCGTCCCTCCCTTC
ACAGGGGCGTGTGGCACGGGCTACAGTTATCGGCGCCAGTACTACAGCAA
AAGAAACATCCCATGCACCTAAATGCGTGCCGCCCTCCATCTCCTCTTTC
CGCTCTTCCTCCTTCTTGTCTCCCCAACCACCAACCTGGCTGCTGAACGG
GATCTCTTTACCAGCGACAAAGACAGGAAGGCAAATGACTCCGCCCTCCC
ATCCAAGGCCCAAATCAGGGCATCCAAGAGAGGCTGCGTTCTCAAGTTCT
ACCCTCTGAAGCCCAAGACACCCTGGCCTACCACGGCCAGCCCTGATCAA
ACGTACCGTTTGGCCTTCAAATTGATCAATCGCAGCAAGAAAGCGGGGTC
GGACTTTAAGAGTGTTTGGCTAGGCATTCAAAAGCCTCCCGGCGCAAACT
TTACAGGAAGCTTCCGTGCCAGGCCTGCCCTACCCGATGCGACCTTCTTC
CCCAATTTTCCCAATCAATTCGTCCCTCTCTTCCTCTGGGGACCTTTCGA
CGTGCCTCCCCGGAGGAAGCAATACATCGATTTTGAGTATACCCTCCCGG
TGTGCTCGCCGGGGATAGCCTGGAATATTACGGTGAATCTCTCTCCGACC
ATTAATACGGGCTTTCAACGCGTCCCTCCCTTCACAGGGGCGTGTGGCAC
GGGCTACAGTTATCGG
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Synonyms
Publications