jgi.p|Nanoce1779_2|609370, mRNA_9857 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609370
Unique NamemRNA_9857
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1505
Alignment locationscaffold_45:60372..61996 -

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Properties
Property NameValue
TranscriptId609456
TrackFilteredModels2
ProteinId609370
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:60372..61996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609370gene_9857Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609370mRNA_9857-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9857CDS_9857Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9857 ID=mRNA_9857|Name=jgi.p|Nanoce1779_2|609370|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
TGAGTGGATGCTGGAGGAGAACTTGGCGGTGACGAGTTTTCGCATATACG
GCGGCTACATTTTTATGGCTGGTGGACGGTTGGAATTCGACTTATGCTTT
TTTTGGGATTTTGAGTTCATAACACCCTTGGATAGGATCTACGTGGGCGG
GGACGTTTTGGTCTTGGCGGGCGAAGTGAGCTTCACGGGCTGTGTCTGGG
TTTATACGACCTTTTTTGGTGTTGAGAATGGCGCGGGGTTCAACATCGCC
CTTTTAGGCGGCGTAGCCACATACACGCTTTGTGAGTTTGCGGAAGTCAA
TGGATTTCTAACCATGAACGGCGTCGGACAGGCCTTTCTTGTTGCTGGAG
GGGTTCAAGTTCTCACGGGCTGCTCTTTTACTTACTTCACCGTCTCTGCT
TTCTTTTCCGGGACCGGGGAAACGACTGTGTTGGGGGGTGCTCAGATCGC
AGTGGGAGTGAGTTTATTTGATACCTATACCATGCTTGCATCGTTCGGCG
CGGGTTTAGATTACTGTGTCTGTGCAGGATTAATGGTTCATATTGGCGCG
GCGATCAACGAGTACTCGGGGCCTATTGCGGCGAGTATGATGGGGGGCTA
TACCTACCTGGGAACAGGGACGTATGTGGGGATTGGCTCACCCGCTATAA
GCACCGTGACGACGATTCAGGAGGCAGGCGTTGTGAGTACTGGATGGGAG
AAAATGAGTAAGGGGGTTATGTCAACGCTTACTTCCGGGTGCTCTTACTG
TGCAGGCAATTTCATTCTTCTGCCCTTTCTCGTTATCTTTATTCCCTCTT
TGTTTCCCTCCCTCCCCTCGCCCTCTTTCTTCTAGGGCGGCACCTATTGC
AATGTTGCGGGAATCAGCACTTTTATTGGATGTACCATCATGGAATTTAC
CGGCATCGCGGCTGGAAATGTCCTCGGAGAATTTGTGGCCGTTGGAAGTA
AGTTAATGGAGAGGAATGAAGAGAGGGGGAGAGAGAGGGAGGGAATAAAC
AACAATCAAAAACAGGTCAGTCTGTCTTGTCCTGAGCAATCAAAGGTGCA
CTTCCGACTTAGGCTGGAGCTTCAAGCAAATTTTTCACGTTACACCCTCT
CCGTCCTTCCCTTATACCCTGTCTCCCTCTCTCTCTTCTCCTAGCTGGTC
TGCTCATCTGGATCGGAAGTCCCTTCATCGAGTACAGCGGGATAGAGTTT
TTCAAAGGCCTGGGAGGAACTATTTTCGTCGGCGCTGGCACCGCTGTCCT
AGGTTACTCTCCTCTAGTGGAGGCCCTAGGCTTACAGAACCACCACAAAG
ACTTTTGGATTCAAGGGAGTTGCGAAGAATATGAGGGGGCGTGGGCACCG
GGGCCGGTGTTTTTCGTGACGGGCGGTGAGGGAAGATGCCAAGATTTCGA
GACGACCCCTCCGCCGCGAAGGAGGAAAGAAAGGGAGGAGGAGGAGGAGG
AAAGAGCGAGGGAAGATGGAGTGGATGCGCTGGGGTTGGGGATTTTGGGG
GAGGA
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protein sequence of jgi.p|Nanoce1779_2|609370

>mRNA_9857-protein ID=mRNA_9857-protein|Name=jgi.p|Nanoce1779_2|609370|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MLEENLAVTSFRIYGGYIFMAGGRLEFDLCFFWDFEFITPLDRIYVGGDV
LVLAGEVSFTGCVWVYTTFFGVENGAGFNIALLGGVATYTLCEFAEVNGF
LTMNGVGQAFLVAGGVQVLTGCSFTYFTVSAFFSGTGETTVLGGAQIAVG
VSLFDTYTMLASFGAGLDYCVCAGLMVHIGAAINEYSGPIAASMMGGYTY
LGTGTYVGIGSPAISTVTTIQEAGVVSTGWEKMSKGVMSTLTSGCSYCAG
NFILLPFLVIFIPSLFPSLPSPSFF*
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mRNA from alignment at scaffold_45:60372..61996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9857 ID=mRNA_9857|Name=jgi.p|Nanoce1779_2|609370|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp|location=Sequence derived from alignment at scaffold_45:60372..61996- (Nannochloropsis oceanica)
TGAGTGGATGCTGGAGGAGAACTTGGCGGTGACGAGTTTTCGCATATACG
GCGGCTACATTTTTATGGCTGGTGGACGGTTGGAATTCGACTTATGCTTT
TTTTGGGATTTTGAGTTCATAACACCCTTGGATAGGATCTACGTGGGCGG
GGACGTTTTGGTCTTGGCGGGCGAAGTGAGCTTCACGGGCTGTGTCTGGG
TTTATACGACCTTTTTTGGTGTTGAGAATGGCGCGGGGTTCAACATCGCC
CTTTTAGGCGGCGTAGCCACATACACGCTTTGTGAGGTACGTTTTACGTT
GTTCGTTATCGGATTTTGGGCGTAATTGTTTACCCTCCGTCCATTCTAGC
CCCTCACTTGCACCTCCTTCTCTCCCATTTTCCCTCCCTTTCTTTCCCTC
TTGCAGTTTGCGGAAGTCAATGGATTTCTAACCATGAACGGCGTCGGACA
GGCCTTTCTTGTTGCTGGAGGGGTTCAAGTTCTCACGGGCTGCTCTTTTA
CTTACTTCACCGTCTCTGCTTTCTTTTCCGGGACCGGGGAAACGACTGTG
TTGGGGGGTGCTCAGATCGCAGTGGGAGTGAGTTTATTTGATACCTATAC
CATGCTTGCATCGTTCGGCGCGGGTTTAGATTACTGTGTCTGTGCAGGAT
TAATGGTTCATATTGGCGCGGCGATCAACGAGTACTCGGGGCCTATTGCG
GCGAGTATGATGGGGGGCTATACCTACCTGGGAACAGGGACGTATGTGGG
GATTGGCTCACCCGCTATAAGCACCGTGACGACGATTCAGGAGGCAGGCG
TTGTGAGTACTGGATGGGAGAAAATGAGTAAGGGGGTTATGTCAACGCTT
ACTTCCGGGTGCTCTTACTGTGCAGGCAATTTCATTCTTCTGCCCTTTCT
CGTTATCTTTATTCCCTCTTTGTTTCCCTCCCTCCCCTCGCCCTCTTTCT
TCTAGGGCGGCACCTATTGCAATGTTGCGGGAATCAGCACTTTTATTGGA
TGTACCATCATGGAATTTACCGGCATCGCGGCTGGAAATGTCCTCGGAGA
ATTTGTGGCCGTTGGAAGTAAGTTAATGGAGAGGAATGAAGAGAGGGGGA
GAGAGAGGGAGGGAATAAACAACAATCAAAAACAGGTCAGTCTGTCTTGT
CCTGAGCAATCAAAGGTGCACTTCCGACTTAGGCTGGAGCTTCAAGCAAA
TTTTTCACGTTACACCCTCTCCGTCCTTCCCTTATACCCTGTCTCCCTCT
CTCTCTTCTCCTAGCTGGTCTGCTCATCTGGATCGGAAGTCCCTTCATCG
AGTACAGCGGGATAGAGTTTTTCAAAGGCCTGGGAGGAACTATTTTCGTC
GGCGCTGGCACCGCTGTCCTAGGTTACTCTCCTCTAGTGGAGGCCCTAGG
CTTACAGAACCACCACAAAGACTTTTGGATTCAAGGGAGTTGCGAAGAAT
ATGAGGGGGCGTGGGCACCGGGGCCGGTGTTTTTCGTGACGGGCGGTGAG
GGAAGATGCCAAGATTTCGAGACGACCCCTCCGCCGCGAAGGAGGAAAGA
AAGGGAGGAGGAGGAGGAGGAAAGAGCGAGGGAAGATGGAGTGGATGCGC
TGGGGTTGGGGATTTTGGGGGAGGA
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Coding sequence (CDS) from alignment at scaffold_45:60372..61996-

>mRNA_9857 ID=mRNA_9857|Name=jgi.p|Nanoce1779_2|609370|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_45:60372..61996- (Nannochloropsis oceanica)
TTTGCGGAAGTCAATGGATTTCTAACCATGAACGGCGTCGGACAGGCCTT
TCTTGTTGCTGGAGGGGTTCAAGTTCTCACGGGCTGCTCTTTTACTTACT
TCACCGTCTCTGCTTTCTTTTCCGGGACCGGGGAAACGACTGTGTTGGGG
GGTGCTCAGATCGCAGTGGGAGTGAGTTTATTTGATACCTATACCATGCT
TGCATCGTTCGGCGCGGGTTTAGATTACTGTGTCTGTGCAGGATTAATGG
TTCATATTGGCGCGGCGATCAACGAGTACTCGGGGCCTATTGCGGCGAGT
ATGATGGGGGGCTATACCTACCTGGGAACAGGGACGTATGTGGGGATTGG
CTCACCCGCTATAAGCACCGTGACGACGATTCAGGAGGCAGGCGTTGTGA
GTACTGGATGGGAGAAAATGAGTAAGGGGGTTATGTCAACGCTTACTTCC
GGGTGCTCTTACTGTGCAGGCAATTTCATTCTTCTGCCCTTTCTCGTTAT
CTTTATTCCCTCTTTGTTTCCCTCCCTCCCCTCGCCCTCTTTCTTCTAGA
TGCTGGAGGAGAACTTGGCGGTGACGAGTTTTCGCATATACGGCGGCTAC
ATTTTTATGGCTGGTGGACGGTTGGAATTCGACTTATGCTTTTTTTGGGA
TTTTGAGTTCATAACACCCTTGGATAGGATCTACGTGGGCGGGGACGTTT
TGGTCTTGGCGGGCGAAGTGAGCTTCACGGGCTGTGTCTGGGTTTATACG
ACCTTTTTTGGTGTTGAGAATGGCGCGGGGTTCAACATCGCCCTTTTAGG
CGGCGTAGCCACATACACGCTTTGTGAGTTTGCGGAAGTCAATGGATTTC
TAACCATGAACGGCGTCGGACAGGCCTTTCTTGTTGCTGGAGGGGTTCAA
GTTCTCACGGGCTGCTCTTTTACTTACTTCACCGTCTCTGCTTTCTTTTC
CGGGACCGGGGAAACGACTGTGTTGGGGGGTGCTCAGATCGCAGTGGGAG
TGAGTTTATTTGATACCTATACCATGCTTGCATCGTTCGGCGCGGGTTTA
GATTACTGTGTCTGTGCAGGATTAATGGTTCATATTGGCGCGGCGATCAA
CGAGTACTCGGGGCCTATTGCGGCGAGTATGATGGGGGGCTATACCTACC
TGGGAACAGGGACGTATGTGGGGATTGGCTCACCCGCTATAAGCACCGTG
ACGACGATTCAGGAGGCAGGCGTTGTGAGTACTGGATGGGAGAAAATGAG
TAAGGGGGTTATGTCAACGCTTACTTCCGGGTGCTCTTACTGTGCAGGCA
ATTTCATTCTTCTGCCCTTTCTCGTTATCTTTATTCCCTCTTTGTTTCCC
TCCCTCCCCTCGCCCTCTTTCTTCTAGATGCTGGAGGAGAACTTGGCGGT
GACGAGTTTTCGCATATACGGCGGCTACATTTTTATGGCTGGTGGACGGT
TGGAATTCGACTTATGCTTTTTTTGGGATTTTGAGTTCATAACACCCTTG
GATAGGATCTACGTGGGCGGGGACGTTTTGGTCTTGGCGGGCGAAGTGAG
CTTCACGGGCTGTGTCTGGGTTTATACGACCTTTTTTGGTGTTGAGAATG
GCGCGGGGTTCAACATCGCCCTTTTAGGCGGCGTAGCCACATACACGCTT
TGTGAG
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Synonyms
Publications