jgi.p|Nanoce1779_2|609364, mRNA_9856 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609364
Unique NamemRNA_9856
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1389
Alignment locationscaffold_45:58286..59875 -

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Properties
Property NameValue
TranscriptId609450
TrackFilteredModels2
ProteinId609364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:58286..59875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609364gene_9856Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609364mRNA_9856-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9856CDS_9856Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9856 ID=mRNA_9856|Name=jgi.p|Nanoce1779_2|609364|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
GAGAAGGAGGAGGAGGAGGAGGAGAGTGAGTGGTTTTCGAACACATTTCC
CTCATTTTCGTCCTCGTCCTCGTCTTCGTCCTCGTCGTTTGTGGAGTACA
AGGAGCAGTTTATCATACTTGGAGACGTGCACACAACGAGTAGCAGCAGC
AGCAACCCTCCCTCTCCCCCTCCCTCCTTTAACACCTCTGCCTTAGTCGA
AGCCGCATTCCGTCAGGCCCTTCTCTCAATCCTTTCCTCCCTCGATTCCC
GCCCGCAGTCTCTTCAGCTCAGCGTTTGGTCTGCCGAGCCCGATGCTTTC
TTCGCTCCATCCCCCCCTCCCTCTCCCCTCTCCTCGTCCATGTACAAATT
TATCGTCATTGCCACCGACAGAGACAACGCCACAGCCATCGTAGATGCCC
TCTCCTTCTCCTCGTCTTCCTTCTCCTCGCCCTCTCTCCCTTCTTCTTTC
TCCTCCCTTCCCTCCTTCCCCGAGGCCGTACTCGCTTTTATACAGGAGAA
AGAGAGGGAGGAAGGGGTGGAAGGAGGGGTAGGACAGGTGGAGTTGGCAG
TAGAAAAGACGATGCACATCCCAGCCTATAATTCAAAAGGGTTTCTGCAG
CAGCAGCAGACATGGAAAGAGGGATGGAGGGAGGGAGGGAAGGGAGGTGG
CCGTAGAACCACTGCATGGGCTATGACCACCCTTATTCCCTGTGTTTGCG
TGGATTTTCTCAATCAGAGTCAGTCAAATTGCAGTTGCGTGATCTTTGTT
GAGGACAAGGAGGAGGAAGGGAGGAAGGAAGGAGGGAAGGGCGTGATTGT
TGTGCAGGTGCCTGCAGGGGAAGTTTCTTTCGCGTTGCAGGCTGTGGATG
CTTCGACGGGAGGGATGGGTTTCTCGCCTTTGATGGTGGTTTCGAAGGAG
GGGAGGAAGAGGCGGTTGTATGGGCCGTTGGTGGAGTTTTAGAGAGGGAA
TAATATCTGCTTTAAGTTGGGGGCCACCGATGGACGTGATGTGAACAGCT
TATTATCAAACAGCATGGCATGTAATCGTAATTTATGTTCACCTAGATAG
TAGTGGGGGGAAGTGAGAGAAAAAAAGAGTAAATGAATAGCTGCTTTAAG
TTGGGGGCCACCGATGGACGCGATGTGAACAGCTTATGATCAAACAGCAT
GGCATGTAATCGTAATTTATGTCCACCTAGATAGTGGTAGGAGGGGGGGA
AGTGAGAGAAAAAAAGAGTAAATGAATAGCTGCTTTAAGTTGGGGGCCAC
CGATGGACGCGATGTGAACAGCTTATGATCAAACAGCATGGCATGTAATC
GTAATTTATGTCCACCTAGATAGTGGTAGGAGGGGGGGAAGTGAGAGAAA
AAAAGAGTAAATGAATAGCTGCTTTAAGTCGGGGGGCAC
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protein sequence of jgi.p|Nanoce1779_2|609364

>mRNA_9856-protein ID=mRNA_9856-protein|Name=jgi.p|Nanoce1779_2|609364|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MYKFIVIATDRDNATAIVDALSFSSSSFSSPSLPSSFSSLPSFPEAVLAF
IQEKEREEGVEGGVGQVELAVEKTMHIPAYNSKGFLQQQQTWKEGWREGG
KGGGRRTTAWAMTTLIPCVCVDFLNQSQSNCSCVIFVEDKEEEGRKEGGK
GVIVVQVPAGEVSFALQAVDASTGGMGFSPLMVVSKEGRKRRLYGPLVEF
*
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mRNA from alignment at scaffold_45:58286..59875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9856 ID=mRNA_9856|Name=jgi.p|Nanoce1779_2|609364|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at scaffold_45:58286..59875- (Nannochloropsis oceanica)
GAGAAGGAGGAGGAGGAGGAGGAGAGTGAGTGGTTTTCGAACACATTTCC
CTCATTTTCGTCCTCGTCCTCGTCTTCGTCCTCGTCGTTTGTGGAGTACA
AGGAGCAGTTTATCATACTTGGAGACGTGCACACAACGAGTAGCAGCAGC
AGCAACCCTCCCTCTCCCCCTCCCTCCTTTAACACCTCTGCCTTAGTCGA
AGCCGCATTCCGTCAGGCCCTTCTCTCAATCCTTTCCTCCCTCGATTCCC
GCCCGCAGTCTCTTCAGCTCAGCGTTTGGTCTGCCGAGCCCGATGCTTTC
TTCGCTCCATCCCCCCCTCCCTCTCCCCTCTCCTCGTCCATGTACAAATT
TATCGTCATTGCCACCGACAGAGACAACGCCACAGCCATCGTAGATGCCC
TCTCCTTCTCCTCGTCTTCCTTCTCCTCGCCCTCTCTCCCTTCTTCTTTC
TCCTCCCTTCCCTCCTTCCCCGAGGCCGTACTCGCTTTTATACAGGAGAA
AGAGAGGGAGGAAGGGGTGGAAGGAGGGGTAGGACAGGTGGAGTTGGCAG
TAGAAAAGACGATGCACATCCCAGCCTATAATTCAAAAGGGTTTCTGCAG
CAGCAGCAGACATGGAAAGAGGGATGGAGGGAGGGAGGGAAGGGAGGTGG
CCGTAGAACCACTGCATGGGCTGAGGGGGGGGGGGAGGGAGGGAGGGAGG
ACGAGTTTTTTTTTCCCGTGTCTCTGAGAGATCCTTCCCTCCCTGCTTTG
CCTGTGACGCACCTCACCTATGACCACCCTTATTCCCTGTGTTTGCGTGG
ATTTTCTCAATCAGAGTCAGTCAAATTGCAGTTGCTGTTGAGTAGTGGCG
GGAGGGAGGAGGGGAAGGAGGGGGAGGTGCGAGTGTTGGGTGAGGTTCTG
ATGGATGCTGGGGGCCACTGCGGGGAGAAAAGGCAGACCGTGATCTTTGT
TGAGGACAAGGAGGAGGAAGGGAGGAAGGAAGGAGGGAAGGGCGTGATTG
TTGTGCAGGTGCCTGCAGGGGAAGTTTCTTTCGCGTTGCAGGCTGTGGAT
GCTTCGACGGGAGGGATGGGTTTCTCGCCTTTGATGGTGGTTTCGAAGGA
GGGGAGGAAGAGGCGGTTGTATGGGCCGTTGGTGGAGTTTTAGAGAGGGA
ATAATATCTGCTTTAAGTTGGGGGCCACCGATGGACGTGATGTGAACAGC
TTATTATCAAACAGCATGGCATGTAATCGTAATTTATGTTCACCTAGATA
GTAGTGGGGGGAAGTGAGAGAAAAAAAGAGTAAATGAATAGCTGCTTTAA
GTTGGGGGCCACCGATGGACGCGATGTGAACAGCTTATGATCAAACAGCA
TGGCATGTAATCGTAATTTATGTCCACCTAGATAGTGGTAGGAGGGGGGG
AAGTGAGAGAAAAAAAGAGTAAATGAATAGCTGCTTTAAGTTGGGGGCCA
CCGATGGACGCGATGTGAACAGCTTATGATCAAACAGCATGGCATGTAAT
CGTAATTTATGTCCACCTAGATAGTGGTAGGAGGGGGGGAAGTGAGAGAA
AAAAAGAGTAAATGAATAGCTGCTTTAAGTCGGGGGGCAC
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Coding sequence (CDS) from alignment at scaffold_45:58286..59875-

>mRNA_9856 ID=mRNA_9856|Name=jgi.p|Nanoce1779_2|609364|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_45:58286..59875- (Nannochloropsis oceanica)
CGTGATCTTTGTTGAGGACAAGGAGGAGGAAGGGAGGAAGGAAGGAGGGA
AGGGCGTGATTGTTGTGCAGGTGCCTGCAGGGGAAGTTTCTTTCGCGTTG
CAGGCTGTGGATGCTTCGACGGGAGGGATGGGTTTCTCGCCTTTGATGGT
GGTTTCGAAGGAGGGGAGGAAGAGGCGGTTGTATGGGCCGTTGGTGGAGT
TTTAGCTATGACCACCCTTATTCCCTGTGTTTGCGTGGATTTTCTCAATC
AGAGTCAGTCAAATTGCAGTTGATGTACAAATTTATCGTCATTGCCACCG
ACAGAGACAACGCCACAGCCATCGTAGATGCCCTCTCCTTCTCCTCGTCT
TCCTTCTCCTCGCCCTCTCTCCCTTCTTCTTTCTCCTCCCTTCCCTCCTT
CCCCGAGGCCGTACTCGCTTTTATACAGGAGAAAGAGAGGGAGGAAGGGG
TGGAAGGAGGGGTAGGACAGGTGGAGTTGGCAGTAGAAAAGACGATGCAC
ATCCCAGCCTATAATTCAAAAGGGTTTCTGCAGCAGCAGCAGACATGGAA
AGAGGGATGGAGGGAGGGAGGGAAGGGAGGTGGCCGTAGAACCACTGCAT
GGGCGTGATCTTTGTTGAGGACAAGGAGGAGGAAGGGAGGAAGGAAGGAG
GGAAGGGCGTGATTGTTGTGCAGGTGCCTGCAGGGGAAGTTTCTTTCGCG
TTGCAGGCTGTGGATGCTTCGACGGGAGGGATGGGTTTCTCGCCTTTGAT
GGTGGTTTCGAAGGAGGGGAGGAAGAGGCGGTTGTATGGGCCGTTGGTGG
AGTTTTAGCTATGACCACCCTTATTCCCTGTGTTTGCGTGGATTTTCTCA
ATCAGAGTCAGTCAAATTGCAGTTGATGTACAAATTTATCGTCATTGCCA
CCGACAGAGACAACGCCACAGCCATCGTAGATGCCCTCTCCTTCTCCTCG
TCTTCCTTCTCCTCGCCCTCTCTCCCTTCTTCTTTCTCCTCCCTTCCCTC
CTTCCCCGAGGCCGTACTCGCTTTTATACAGGAGAAAGAGAGGGAGGAAG
GGGTGGAAGGAGGGGTAGGACAGGTGGAGTTGGCAGTAGAAAAGACGATG
CACATCCCAGCCTATAATTCAAAAGGGTTTCTGCAGCAGCAGCAGACATG
GAAAGAGGGATGGAGGGAGGGAGGGAAGGGAGGTGGCCGTAGAACCACTG
CATGGGCGTGATCTTTGTTGAGGACAAGGAGGAGGAAGGGAGGAAGGAAG
GAGGGAAGGGCGTGATTGTTGTGCAGGTGCCTGCAGGGGAAGTTTCTTTC
GCGTTGCAGGCTGTGGATGCTTCGACGGGAGGGATGGGTTTCTCGCCTTT
GATGGTGGTTTCGAAGGAGGGGAGGAAGAGGCGGTTGTATGGGCCGTTGG
TGGAGTTTTAGCTATGACCACCCTTATTCCCTGTGTTTGCGTGGATTTTC
TCAATCAGAGTCAGTCAAATTGCAGTTGATGTACAAATTTATCGTCATTG
CCACCGACAGAGACAACGCCACAGCCATCGTAGATGCCCTCTCCTTCTCC
TCGTCTTCCTTCTCCTCGCCCTCTCTCCCTTCTTCTTTCTCCTCCCTTCC
CTCCTTCCCCGAGGCCGTACTCGCTTTTATACAGGAGAAAGAGAGGGAGG
AAGGGGTGGAAGGAGGGGTAGGACAGGTGGAGTTGGCAGTAGAAAAGACG
ATGCACATCCCAGCCTATAATTCAAAAGGGTTTCTGCAGCAGCAGCAGAC
ATGGAAAGAGGGATGGAGGGAGGGAGGGAAGGGAGGTGGCCGTAGAACCA
CTGCATGGG
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Synonyms
Publications