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Properties
| Property Name | Value |
|---|
| TranscriptId | 609435 |
| Track | FilteredModels2 |
| ProteinId | 609349 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_45 | supercontig | scaffold_45:51309..53884 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9854 ID=mRNA_9854|Name=jgi.p|Nanoce1779_2|609349|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp
AGCCACAGGGTGTTCCTCTGCTTTTCCTCCCTCCTTTCCACCCTCCTTCA
AGTTCCTCCACCACCGTCTGTCGCTTCCCCGGCCAGACAAGGCAGCCCCA
TGGCACGTCTACCACCACCAGTATCTTCTGGAGCAGCAGCTGCAGCAGCG
AGTAAAAAGCGGAGGCGCGAAAAGGCGGGTGTCTTGGAGTTGCTACGCCG
TATCAGCTGGCTGCACTGGGCAGGAATCGTGGGCTTGGTCTCGGTCGTAC
TGGGTGGGCGTCATTTCTTCAGGAAAATAGACGATGCAGAAGCCCTCATT
CAAGGTGCCGACGATGCCTACCAACGTGGGAACCGCCTCTTCCAAAAAGG
CAATAAAGAGCGAGCAAAACATCATTACATGAAAGCAGTGACGCTCTTTC
CGAAGCATGTCTACGCCTGGAGCAACCTGGGAACGGTGCTGAGGGAATTA
GGAGAATTACAAGGGTCTGTAGAAGCACACAAGCAGGCCCTTGCCCTCAT
TCCCAAGGCCCGGAACCACTACAATCTCGCTGTATCCTACCAAAGCCAGG
GTGAGAACAAAGCTGCCATATCTTCTTACCGCACGGCGTTGTCACTGGAC
GAAACGGGCATTCCTGACGCGTATTTCAATTTAGGCGTAGCGCTGCAAGA
AGAAGGACACTTAGAGGTCAGCTTGATTTTTCCATTGTATTTTTACTGTT
TTCTCATGTTCTCATGTCGATATGACGGAGCTCATTATAGTGAGCAGCAT
GGGCTTTTTTGCACCTCACCTCATTCTGATCTATCTACCCCCCTCCCTCC
CTCCCTCCCTCCCTCCTTTCCTCTCTCCGTCAGGACGCAAATGCGGCCTA
TCTTCGCGCTTATTCCCTTGATCCTTCGAATGCGGGCGCGTGGGGAAACC
ATTGCAATATCCTTCAGAGTCTGGAAGGGAAAGAGGGGGGGATGGAGGAC
GAAGAAGAGAAGACAGACGAGGAGGCGGGGAAGGAGGAAGGGAAGGACGT
AGGGCGCGTCGAGACTTGTTACCGGCACCTCATTCTCGCCCATCCTTCCT
ATGATCGCGCGTATGTAAACCTAGGAGGGTACTTTTACATCAAAGGTGAC
TTGGAGAAGGCCGCAGCACTGTATATGAAAGCCCTGGAAATCAATCCGGA
GAATGCAATAGCGATACACGCGCTCGGCGCCCTACAGGGAGAGAAGCTGG
AGGGGGCGAGTTTGGATTATCTTTCCGAGTTATTTGATTCCTACTCGGCG
ACTTTTGACGCCAGCTTGCACGCGCTCGAGTACAAGAGTCCTGAGCTCAT
GAGAAGAGCAGTGGATAGGTACCTGGGCTCGCCGGAGGGGAAAGAGTTGG
CCCCTAAGGGTCCTGTCTGGAACGTGCTCGACGCCGGCTGTGGCACTGGT
TTGTCTGGTGTTCTCTTCCGCAATCTTTCTTCGCACCTCATGGGCGTGGA
CGTGTCTATGAGGATGGCGCAAAAAGCAGAGGCAAGAGGAGTCTATGACG
AGTTGAGCGTGGGCGACATGGCTGAGGAGCTGCTGGCGCGCGCGGGGTCG
CTGGATCTGATCATTTCTGCCGATGTCATGGTGTACATGGGCCGACTTGA
TTATATTCTGGGCACCACCAGCAAAGCGCTCAAAGACGAAACCGGCCTCT
TTGTATTTACTCTTGAATCCCTAGAGGAAGTCCCAAAAACAGAAATTGCG
GAAGACAGGGAGACAGAAAGCGATGAAGGGTGGTTGTTGCGCCCGACGGG
GCGGTATGCCCACCGGAGGGAATATGTAGAGGAGTTGTTGGGAAAGGTAG
GGATGGAGGTGGTGAGCGTAGAAGCAGTGGTAGGAAGAAAAGACAAAGGA
CAGCCAATACCTGGCTGGTTGTTTTTGTGCCGCAAACGACGGGAACACAT
AAAAATATAGAACACCACAAGAAAGTTGCAGTCAGCCACTAGTGGAGCCA
AGACTAGGAAAGATAGGAGAACAGACAACTTACAAAGCATCAAGCCCCAG
TTAGA back to topprotein sequence of jgi.p|Nanoce1779_2|609349 >mRNA_9854-protein ID=mRNA_9854-protein|Name=jgi.p|Nanoce1779_2|609349|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MARLPPPVSSGAAAAAASKKRRREKAGVLELLRRISWLHWAGIVGLVSVV
LGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLF
PKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQ
GENKAAISSYRTALSLDETGIPDAYFNLGVALQEEGHLEVSLIFPLYFYC
FLMFSCRYDGAHYSEQHGLFCTSPHSDLSTPLPPSLPPSFPLSVRTQMRP
IFALIPLILRMRARGETIAISFRVWKGKRGGWRTKKRRQTRRRGRRKGRT
* back to topmRNA from alignment at scaffold_45:51309..53884- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9854 ID=mRNA_9854|Name=jgi.p|Nanoce1779_2|609349|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at scaffold_45:51309..53884- (Nannochloropsis oceanica)
AGCCACAGGGTGTTCCTCTGCTTTTCCTCCCTCCTTTCCACCCTCCTTCA
AGTTCCTCCACCACCGTCTGTCGCTTCCCCGGCCAGACAAGGCAGCCCCA
TGGCACGTCTACCACCACCAGTATCTTCTGGAGCAGCAGCTGCAGCAGCG
AGTAAAAAGCGGAGGCGCGAAAAGGCGGGTGTCTTGGAGTTGCTACGCCG
TATCAGCTGGCTGCACTGGGCAGGAATCGTGGGCTTGGTCTCGGTCGTAC
TGGGTGGGCGTCATTTCTTCAGGTAAAAAGCTACTTTTGAGGGAGGGATA
GAAGGAGACAGGGCAAGGAGATGCTAGAAGGTTAGGGTTGCTTACGTCCT
TCCGCGACAAGATGTTCACTGAGCGACCCCGCTCTCTCCTTCCTCTTACT
CCCCCTTCTCATTCCTCATACTCTGTCGTCAACAGGAAAATAGACGATGC
AGAAGCCCTCATTCAAGGTGCCGACGATGCCTACCAACGTGGGAACCGCC
TCTTCCAAAAAGGCAATAAAGAGCGAGCAAAACATCATTACATGAAAGCA
GTGACGCTCTTTCCGAAGCATGTCTACGCCTGGAGCAACCTGGGAACGGT
GCTGAGGGAATTAGGAGAATTACAAGGGTCTGTAGAAGCACACAAGCAGG
TAAGGGGAATTAAAAAGAAATCAAGGGGTAGTCTAGTATCTCCATTGGCA
GGGTTTTGTCTGTCTGTATAAGGCACCTAACACAAACACCAATCCACGGC
CTCCCTCCCCTTCCTCTGCTTCCTCGTTTAGGCCCTTGCCCTCATTCCCA
AGGCCCGGAACCACTACAATCTCGCTGTATCCTACCAAAGCCAGGGTGAG
AACAAAGCTGCCATATCTTCTTACCGCACGGCGTTGTCACTGGACGAAAC
GGGCATTCCTGACGCGTATTTCAATTTAGGCGTAGCGCTGCAAGAAGAAG
GACACTTAGAGGTCAGCTTGATTTTTCCATTGTATTTTTACTGTTTTCTC
ATGTTCTCATGTCGATATGACGGAGCTCATTATAGTGAGCAGCATGGGCT
TTTTTGCACCTCACCTCATTCTGATCTATCTACCCCCCTCCCTCCCTCCC
TCCCTCCCTCCTTTCCTCTCTCCGTCAGGACGCAAATGCGGCCTATCTTC
GCGCTTATTCCCTTGATCCTTCGAATGCGGGCGCGTGGGGAAACCATTGC
AATATCCTTCAGAGTCTGGAAGGGAAAGAGGGGGGGATGGAGGACGAAGA
AGAGAAGACAGACGAGGAGGCGGGGAAGGAGGAAGGGAAGGACGTAGGGC
GCGTCGAGACTTGTTACCGGCACCTCATTCTCGCCCATCCTTCCTATGAT
CGCGCGTATGTAAACCTAGGAGGGTACTTTTACATCAAAGGTGACTTGGA
GAAGGCCGCAGCACTGTATATGAAAGCCCTGGAAATCAATCCGGAGAATG
CAATAGCGATACACGCGCTCGGCGCCCTACAGGGAGAGAAGCTGGAGGGG
GCGAGTTTGGATTATCTTTCCGAGTTATTTGATTCCTACTCGGCGACTTT
TGACGCCAGCTTGCACGCGCTCGAGTACAAGAGTCCTGAGCTCATGAGAA
GAGCAGTGGATAGGTACCTGGGCTCGCCGGAGGGGAAAGAGTTGGCCCCT
AAGGTAAAAGAAAATCCCATGCGTCTTGCGTTGGATTTTGATCCTCGACT
GCACTCGGACTCATGCCTCTTTCCATCCCTACCTCTTTTCCCTTTCCTCG
CTTCTTGAAAATACAGGGTCCTGTCTGGAACGTGCTCGACGCCGGCTGTG
GCACTGGTTTGTCTGGTGTTCTCTTCCGCAATCTTTCTTCGCACCTCATG
GGCGTGGACGTGTCTATGAGGATGGCGCAAAAAGCAGAGGCAAGAGGAGT
CTATGACGAGTTGAGCGTGGGCGACATGGCTGAGGAGCTGCTGGCGCGCG
CGGGGTCGCTGGATCTGGTAACTCATTGGGACCCCACACTCCCTCTTTTT
CTCTGTATGTCCCACTAACTCCCTCCTCTGCCAAGCTCGACGAGTTCATC
AAAATGGCAGCCAGATGTCCCGATCGTATCAATTGGGCTTTCCTGCCTTA
TCTCCCTCCCTCCCTCCCTCCCCCCTCCAGATCATTTCTGCCGATGTCAT
GGTGTACATGGGCCGACTTGATTATATTCTGGGCACCACCAGCAAAGCGC
TCAAAGACGAAACCGGCCTCTTTGTATTTACTCTTGAATCCCTAGAGGAA
GTCCCAAAAACAGAAATTGCGGAAGACAGGGAGACAGAAAGCGATGAAGG
GTGGTTGTTGCGCCCGACGGGGCGGTATGCCCACCGGAGGGAATATGTAG
AGGAGTTGTTGGGAAAGGTAGGGATGGAGGTGGTGAGCGTAGAAGCAGTG
GTAGGAAGAAAAGACAAAGGACAGCCAATACCTGGCTGGTTGTTTTTGTG
CCGCAAACGACGGGAACACATAAAAATATAGAACACCACAAGAAAGTTGC
AGTCAGCCACTAGTGGAGCCAAGACTAGGAAAGATAGGAGAACAGACAAC
TTACAAAGCATCAAGCCCCAGTTAGA back to topCoding sequence (CDS) from alignment at scaffold_45:51309..53884- >mRNA_9854 ID=mRNA_9854|Name=jgi.p|Nanoce1779_2|609349|organism=Nannochloropsis oceanica|type=CDS|length=2709bp|location=Sequence derived from alignment at scaffold_45:51309..53884- (Nannochloropsis oceanica)
GCCCTTGCCCTCATTCCCAAGGCCCGGAACCACTACAATCTCGCTGTATC
CTACCAAAGCCAGGGTGAGAACAAAGCTGCCATATCTTCTTACCGCACGG
CGTTGTCACTGGACGAAACGGGCATTCCTGACGCGTATTTCAATTTAGGC
GTAGCGCTGCAAGAAGAAGGACACTTAGAGGTCAGCTTGATTTTTCCATT
GTATTTTTACTGTTTTCTCATGTTCTCATGTCGATATGACGGAGCTCATT
ATAGTGAGCAGCATGGGCTTTTTTGCACCTCACCTCATTCTGATCTATCT
ACCCCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTCTCTCCGTCAGGAC
GCAAATGCGGCCTATCTTCGCGCTTATTCCCTTGATCCTTCGAATGCGGG
CGCGTGGGGAAACCATTGCAATATCCTTCAGAGTCTGGAAGGGAAAGAGG
GGGGGATGGAGGACGAAGAAGAGAAGACAGACGAGGAGGCGGGGAAGGAG
GAAGGGAAGGACGTAGGAAAATAGACGATGCAGAAGCCCTCATTCAAGGT
GCCGACGATGCCTACCAACGTGGGAACCGCCTCTTCCAAAAAGGCAATAA
AGAGCGAGCAAAACATCATTACATGAAAGCAGTGACGCTCTTTCCGAAGC
ATGTCTACGCCTGGAGCAACCTGGGAACGGTGCTGAGGGAATTAGGAGAA
TTACAAGGGTCTGTAGAAGCACACAAGCAGATGGCACGTCTACCACCACC
AGTATCTTCTGGAGCAGCAGCTGCAGCAGCGAGTAAAAAGCGGAGGCGCG
AAAAGGCGGGTGTCTTGGAGTTGCTACGCCGTATCAGCTGGCTGCACTGG
GCAGGAATCGTGGGCTTGGTCTCGGTCGTACTGGGTGGGCGTCATTTCTT
CAGGCCCTTGCCCTCATTCCCAAGGCCCGGAACCACTACAATCTCGCTGT
ATCCTACCAAAGCCAGGGTGAGAACAAAGCTGCCATATCTTCTTACCGCA
CGGCGTTGTCACTGGACGAAACGGGCATTCCTGACGCGTATTTCAATTTA
GGCGTAGCGCTGCAAGAAGAAGGACACTTAGAGGTCAGCTTGATTTTTCC
ATTGTATTTTTACTGTTTTCTCATGTTCTCATGTCGATATGACGGAGCTC
ATTATAGTGAGCAGCATGGGCTTTTTTGCACCTCACCTCATTCTGATCTA
TCTACCCCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTCTCTCCGTCAG
GACGCAAATGCGGCCTATCTTCGCGCTTATTCCCTTGATCCTTCGAATGC
GGGCGCGTGGGGAAACCATTGCAATATCCTTCAGAGTCTGGAAGGGAAAG
AGGGGGGGATGGAGGACGAAGAAGAGAAGACAGACGAGGAGGCGGGGAAG
GAGGAAGGGAAGGACGTAGGAAAATAGACGATGCAGAAGCCCTCATTCAA
GGTGCCGACGATGCCTACCAACGTGGGAACCGCCTCTTCCAAAAAGGCAA
TAAAGAGCGAGCAAAACATCATTACATGAAAGCAGTGACGCTCTTTCCGA
AGCATGTCTACGCCTGGAGCAACCTGGGAACGGTGCTGAGGGAATTAGGA
GAATTACAAGGGTCTGTAGAAGCACACAAGCAGATGGCACGTCTACCACC
ACCAGTATCTTCTGGAGCAGCAGCTGCAGCAGCGAGTAAAAAGCGGAGGC
GCGAAAAGGCGGGTGTCTTGGAGTTGCTACGCCGTATCAGCTGGCTGCAC
TGGGCAGGAATCGTGGGCTTGGTCTCGGTCGTACTGGGTGGGCGTCATTT
CTTCAGGCCCTTGCCCTCATTCCCAAGGCCCGGAACCACTACAATCTCGC
TGTATCCTACCAAAGCCAGGGTGAGAACAAAGCTGCCATATCTTCTTACC
GCACGGCGTTGTCACTGGACGAAACGGGCATTCCTGACGCGTATTTCAAT
TTAGGCGTAGCGCTGCAAGAAGAAGGACACTTAGAGGTCAGCTTGATTTT
TCCATTGTATTTTTACTGTTTTCTCATGTTCTCATGTCGATATGACGGAG
CTCATTATAGTGAGCAGCATGGGCTTTTTTGCACCTCACCTCATTCTGAT
CTATCTACCCCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTCTCTCCGT
CAGGACGCAAATGCGGCCTATCTTCGCGCTTATTCCCTTGATCCTTCGAA
TGCGGGCGCGTGGGGAAACCATTGCAATATCCTTCAGAGTCTGGAAGGGA
AAGAGGGGGGGATGGAGGACGAAGAAGAGAAGACAGACGAGGAGGCGGGG
AAGGAGGAAGGGAAGGACGTAGGAAAATAGACGATGCAGAAGCCCTCATT
CAAGGTGCCGACGATGCCTACCAACGTGGGAACCGCCTCTTCCAAAAAGG
CAATAAAGAGCGAGCAAAACATCATTACATGAAAGCAGTGACGCTCTTTC
CGAAGCATGTCTACGCCTGGAGCAACCTGGGAACGGTGCTGAGGGAATTA
GGAGAATTACAAGGGTCTGTAGAAGCACACAAGCAGATGGCACGTCTACC
ACCACCAGTATCTTCTGGAGCAGCAGCTGCAGCAGCGAGTAAAAAGCGGA
GGCGCGAAAAGGCGGGTGTCTTGGAGTTGCTACGCCGTATCAGCTGGCTG
CACTGGGCAGGAATCGTGGGCTTGGTCTCGGTCGTACTGGGTGGGCGTCA
TTTCTTCAG back to top
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