jgi.p|Nanoce1779_2|314322, mRNA_9853 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|314322
Unique NamemRNA_9853
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1130
Alignment locationscaffold_45:51229..52934 -

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Properties
Property NameValue
TranscriptId314408
TrackFilteredModels2
ProteinId314322
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:51229..52934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314322gene_9853Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314322mRNA_9853-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9853CDS_9853Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9853 ID=mRNA_9853|Name=jgi.p|Nanoce1779_2|314322|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
GACACTTAGAGGACGCAAATGCGGCCTATCTTCGCGCTTATTCCCTTGAT
CCTTCGAATGCGGGCGCGTGGGGAAACCATTGCAATATCCTTCCTATGAT
CGCGCGTATGTAAACCTAGGAGGGTACTTTTACATCAAAGGTGACTTGGA
GAAGGCCGCAGCACTGTATATGAAAGCCCTGGAAATCAATCCGGAGAATG
CAATAGCGATACACGCGCTCGGCGCCCTACAGGGAGAGAAGCTGGAGGGG
GCGAGTTTGGATTATCTTTCCGAGTTATTTGATTCCTACTCGGCGACTTT
TGACGCCAGCTTGCACGCGCTCGAGTACAAGAGTCCTGAGCTCATGAGAA
GAGCAGTGGATAGGTACCTGGGCTCGCCGGAGGGGAAAGAGTTGGCCCCT
AAGGGTCCTGTCTGGAACGTGCTCGACGCCGGCTGTGGCACTGGTTTGTC
TGGTGTTCTCTTCCGCAATCTTTCTTCGCACCTCATGGGCGTGGACGTGT
CTATGAGGATGGCGCAAAAAGCAGAGGCAAGAGGAGTCTATGACGAGTTG
AGCGTGGGCGACATGGCTGAGGAGCTGCTGGCGCGCGCGGGGTCGCTGGA
TCTGATCATTTCTGCCGATGTCATGGTGTACATGGGCCGACTTGATTATA
TTCTGGGCACCACCAGCAAAGCGCTCAAAGACGAAACCGGCCTCTTTGTA
TTTACTCTTGAATCCCTAGAGGAAGTCCCAAAAACAGAAATTGCGGAAGA
CAGGGAGACAGAAAGCGATGAAGGGTGGTTGTTGCGCCCGACGGGGCGGT
ATGCCCACCGGAGGGAATATGTAGAGGAGTTGTTGGGAAAGGTAGGGATG
GAGGTGGTGAGCGTAGAAGCAGTGGTAGGAAGAAAAGACAAAGGACAGCC
AATACCTGGCTGGTTGTTTTTGTGCCGCAAACGACGGGAACACATAAAAA
TATAGAACACCACAAGAAAGTTGCAGTCAGCCACTAGTGGAGCCAAGACT
AGGAAAGATAGGAGAACAGACAACTTACAAAGCATCAAGCCCCAGTTAGA
CACTGACTTTGATTCTTTCTTTCTAATTATTTTATGACGGGGTCCTACTG
CGTCGGCTTTATCGCCGTCGAAACGGGAGA
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protein sequence of jgi.p|Nanoce1779_2|314322

>mRNA_9853-protein ID=mRNA_9853-protein|Name=jgi.p|Nanoce1779_2|314322|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHA
LEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRN
LSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISAD
VMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESD
EGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLF
LCRKRREHIKI*
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mRNA from alignment at scaffold_45:51229..52934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9853 ID=mRNA_9853|Name=jgi.p|Nanoce1779_2|314322|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_45:51229..52934- (Nannochloropsis oceanica)
GACACTTAGAGGTCAGCTTGATTTTTCCATTGTATTTTTACTGTTTTCTC
ATGTTCTCATGTCGATATGACGGAGCTCATTATAGTGAGCAGCATGGGCT
TTTTTGCACCTCACCTCATTCTGATCTATCTACCCCCCTCCCTCCCTCCC
TCCCTCCCTCCTTTCCTCTCTCCGTCAGGACGCAAATGCGGCCTATCTTC
GCGCTTATTCCCTTGATCCTTCGAATGCGGGCGCGTGGGGAAACCATTGC
AATATCCTTCAGAGTCTGGAAGGGAAAGAGGGGGGGATGGAGGACGAAGA
AGAGAAGACAGACGAGGAGGCGGGGAAGGAGGAAGGGAAGGACGTAGGGC
GCGTCGAGACTTGTTACCGGCACCTCATTCTCGCCCATCCTTCCTATGAT
CGCGCGTATGTAAACCTAGGAGGGTACTTTTACATCAAAGGTGACTTGGA
GAAGGCCGCAGCACTGTATATGAAAGCCCTGGAAATCAATCCGGAGAATG
CAATAGCGATACACGCGCTCGGCGCCCTACAGGGAGAGAAGCTGGAGGGG
GCGAGTTTGGATTATCTTTCCGAGTTATTTGATTCCTACTCGGCGACTTT
TGACGCCAGCTTGCACGCGCTCGAGTACAAGAGTCCTGAGCTCATGAGAA
GAGCAGTGGATAGGTACCTGGGCTCGCCGGAGGGGAAAGAGTTGGCCCCT
AAGGTAAAAGAAAATCCCATGCGTCTTGCGTTGGATTTTGATCCTCGACT
GCACTCGGACTCATGCCTCTTTCCATCCCTACCTCTTTTCCCTTTCCTCG
CTTCTTGAAAATACAGGGTCCTGTCTGGAACGTGCTCGACGCCGGCTGTG
GCACTGGTTTGTCTGGTGTTCTCTTCCGCAATCTTTCTTCGCACCTCATG
GGCGTGGACGTGTCTATGAGGATGGCGCAAAAAGCAGAGGCAAGAGGAGT
CTATGACGAGTTGAGCGTGGGCGACATGGCTGAGGAGCTGCTGGCGCGCG
CGGGGTCGCTGGATCTGGTAACTCATTGGGACCCCACACTCCCTCTTTTT
CTCTGTATGTCCCACTAACTCCCTCCTCTGCCAAGCTCGACGAGTTCATC
AAAATGGCAGCCAGATGTCCCGATCGTATCAATTGGGCTTTCCTGCCTTA
TCTCCCTCCCTCCCTCCCTCCCCCCTCCAGATCATTTCTGCCGATGTCAT
GGTGTACATGGGCCGACTTGATTATATTCTGGGCACCACCAGCAAAGCGC
TCAAAGACGAAACCGGCCTCTTTGTATTTACTCTTGAATCCCTAGAGGAA
GTCCCAAAAACAGAAATTGCGGAAGACAGGGAGACAGAAAGCGATGAAGG
GTGGTTGTTGCGCCCGACGGGGCGGTATGCCCACCGGAGGGAATATGTAG
AGGAGTTGTTGGGAAAGGTAGGGATGGAGGTGGTGAGCGTAGAAGCAGTG
GTAGGAAGAAAAGACAAAGGACAGCCAATACCTGGCTGGTTGTTTTTGTG
CCGCAAACGACGGGAACACATAAAAATATAGAACACCACAAGAAAGTTGC
AGTCAGCCACTAGTGGAGCCAAGACTAGGAAAGATAGGAGAACAGACAAC
TTACAAAGCATCAAGCCCCAGTTAGACACTGACTTTGATTCTTTCTTTCT
AATTATTTTATGACGGGGTCCTACTGCGTCGGCTTTATCGCCGTCGAAAC
GGGAGA
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Coding sequence (CDS) from alignment at scaffold_45:51229..52934-

>mRNA_9853 ID=mRNA_9853|Name=jgi.p|Nanoce1779_2|314322|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_45:51229..52934- (Nannochloropsis oceanica)
ATCATTTCTGCCGATGTCATGGTGTACATGGGCCGACTTGATTATATTCT
GGGCACCACCAGCAAAGCGCTCAAAGACGAAACCGGCCTCTTTGTATTTA
CTCTTGAATCCCTAGAGGAAGTCCCAAAAACAGAAATTGCGGAAGACAGG
GAGACAGAAAGCGATGAAGGGTGGTTGTTGCGCCCGACGGGGCGGTATGC
CCACCGGAGGGAATATGTAGAGGAGTTGTTGGGAAAGGTAGGGATGGAGG
TGGTGAGCGTAGAAGCAGTGGTAGGAAGAAAAGACAAAGGACAGCCAATA
CCTGGCTGGTTGTTTTTGTGCCGCAAACGACGGGAACACATAAAAATATA
GGGTCCTGTCTGGAACGTGCTCGACGCCGGCTGTGGCACTGGTTTGTCTG
GTGTTCTCTTCCGCAATCTTTCTTCGCACCTCATGGGCGTGGACGTGTCT
ATGAGGATGGCGCAAAAAGCAGAGGCAAGAGGAGTCTATGACGAGTTGAG
CGTGGGCGACATGGCTGAGGAGCTGCTGGCGCGCGCGGGGTCGCTGGATC
TGATGAAAGCCCTGGAAATCAATCCGGAGAATGCAATAGCGATACACGCG
CTCGGCGCCCTACAGGGAGAGAAGCTGGAGGGGGCGAGTTTGGATTATCT
TTCCGAGTTATTTGATTCCTACTCGGCGACTTTTGACGCCAGCTTGCACG
CGCTCGAGTACAAGAGTCCTGAGCTCATGAGAAGAGCAGTGGATAGGTAC
CTGGGCTCGCCGGAGGGGAAAGAGTTGGCCCCTAAGATCATTTCTGCCGA
TGTCATGGTGTACATGGGCCGACTTGATTATATTCTGGGCACCACCAGCA
AAGCGCTCAAAGACGAAACCGGCCTCTTTGTATTTACTCTTGAATCCCTA
GAGGAAGTCCCAAAAACAGAAATTGCGGAAGACAGGGAGACAGAAAGCGA
TGAAGGGTGGTTGTTGCGCCCGACGGGGCGGTATGCCCACCGGAGGGAAT
ATGTAGAGGAGTTGTTGGGAAAGGTAGGGATGGAGGTGGTGAGCGTAGAA
GCAGTGGTAGGAAGAAAAGACAAAGGACAGCCAATACCTGGCTGGTTGTT
TTTGTGCCGCAAACGACGGGAACACATAAAAATATAGGGTCCTGTCTGGA
ACGTGCTCGACGCCGGCTGTGGCACTGGTTTGTCTGGTGTTCTCTTCCGC
AATCTTTCTTCGCACCTCATGGGCGTGGACGTGTCTATGAGGATGGCGCA
AAAAGCAGAGGCAAGAGGAGTCTATGACGAGTTGAGCGTGGGCGACATGG
CTGAGGAGCTGCTGGCGCGCGCGGGGTCGCTGGATCTGATGAAAGCCCTG
GAAATCAATCCGGAGAATGCAATAGCGATACACGCGCTCGGCGCCCTACA
GGGAGAGAAGCTGGAGGGGGCGAGTTTGGATTATCTTTCCGAGTTATTTG
ATTCCTACTCGGCGACTTTTGACGCCAGCTTGCACGCGCTCGAGTACAAG
AGTCCTGAGCTCATGAGAAGAGCAGTGGATAGGTACCTGGGCTCGCCGGA
GGGGAAAGAGTTGGCCCCTAAGATCATTTCTGCCGATGTCATGGTGTACA
TGGGCCGACTTGATTATATTCTGGGCACCACCAGCAAAGCGCTCAAAGAC
GAAACCGGCCTCTTTGTATTTACTCTTGAATCCCTAGAGGAAGTCCCAAA
AACAGAAATTGCGGAAGACAGGGAGACAGAAAGCGATGAAGGGTGGTTGT
TGCGCCCGACGGGGCGGTATGCCCACCGGAGGGAATATGTAGAGGAGTTG
TTGGGAAAGGTAGGGATGGAGGTGGTGAGCGTAGAAGCAGTGGTAGGAAG
AAAAGACAAAGGACAGCCAATACCTGGCTGGTTGTTTTTGTGCCGCAAAC
GACGGGAACACATAAAAATATAGGGTCCTGTCTGGAACGTGCTCGACGCC
GGCTGTGGCACTGGTTTGTCTGGTGTTCTCTTCCGCAATCTTTCTTCGCA
CCTCATGGGCGTGGACGTGTCTATGAGGATGGCGCAAAAAGCAGAGGCAA
GAGGAGTCTATGACGAGTTGAGCGTGGGCGACATGGCTGAGGAGCTGCTG
GCGCGCGCGGGGTCGCTGGATCTGATGAAAGCCCTGGAAATCAATCCGGA
GAATGCAATAGCGATACACGCGCTCGGCGCCCTACAGGGAGAGAAGCTGG
AGGGGGCGAGTTTGGATTATCTTTCCGAGTTATTTGATTCCTACTCGGCG
ACTTTTGACGCCAGCTTGCACGCGCTCGAGTACAAGAGTCCTGAGCTCAT
GAGAAGAGCAGTGGATAGGTACCTGGGCTCGCCGGAGGGGAAAGAGTTGG
CCCCTAAG
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Synonyms
Publications