jgi.p|Nanoce1779_2|547470, mRNA_9852 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|547470
Unique Name	mRNA_9852
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1985
Alignment location	scaffold_45:49140..51320 +

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Properties


Property Name	Value
TranscriptId	547556
Track	FilteredModels2
ProteinId	547470

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:49140..51320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547470	gene_9852	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|547470	mRNA_9852-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9852	CDS_9852	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:49140..51320+
coding sequence from alignment at scaffold_45:49140..51320+

mRNA sequence

>mRNA_9852 ID=mRNA_9852|Name=jgi.p|Nanoce1779_2|547470|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp
CAGGCACTTTAAGCTGGACCTCCTCGTGATAGCAACAGCAGTCCAAGAAG
TAGCGGGGGAAACTTGCTGCTCTACTCTCCCGTCCTGCCCTCTCTTTTTT
CCATTCCCACCGGCATCATCATCGTCATGCAGCCTCTCCCCTCCATTCTC
TGTCCCCTCCTCCTGCTCCTCACTATTGCCTTCCTCCCCCTTGTCAGCTA
CGCCTTCAAGTATCAAATCAATGATAAATATGCCGAAACGGCCAAGTGGT
CTTTCACCGAGACGTACATGTACGGGTCTGGCAAGGGGCCCCTCGCCTGG
AAAGATGGGGACGCCTCCGTGCATCTGAATCTCTCCCTCCGGATCTCCAC
TTACGCCGACGAAGAGTACGTCAATGTGTCTGTCCTCTTTTACCACGAAG
AAGACAGAAGCAAAAGCATAGGTGGCAGCGCCAGCAGCGAGGAAGGGGAG
ACTGCCGAGAACGAGGCAGGGGGAGCCATCTTCGTTCCTGATGCTGATTT
GTGTTCTCTTGAGTTTCCTCCGGAAGCCTCCGACCGTTCGCTCCACACGT
TTGCCGCACACAAAGTCGATGAAGTGAGTGGGGAGGGTCAGGAATGGGAG
GCGCTGGTGCATGCTGACTATAAGGTCTTGCAGAGTGGGGTCCAAAATGT
GTTGTTCCAAGTGTGTCCCTCCCTAATGTCCTTGTCCTCGGTGGCATTGG
CTGGGGAGATCAGTTTCAAGAATCCTTATGGGTACTTACCTGGAAGGTTC
TACGGTTATCTGCCTTTTGAGGGTGCGCGCTTTTTTGCGTTTTTGGCCTT
TTTTATGCTTTACCTTGGGATGGTTGTTAAGCATCGCAAGCATTTGTTGC
GATTGCATTACGCGATTCTCGGGGTGTTGGTTGTGGCGACGGCGGAAGCA
TTGTCATGGTTTCTGGCATTTTCGCACATGAACTCGCAAGGAACGCCGTA
CTGTTGTCCATTTCCGGCGGTCGTGATAAGCGCGATGGTCTTCGAGTTAA
TTCAGAAAACAGCGTCACGCGCTCTTTTGTTACTGATTTGTTTGGGGTAC
GGCATTGCGCGGCCGAGTTTGCAGAAGGGGGAATGGTTCAGTCTTGGGAC
TTTGACATTGTTGTATTTGGGTGCGACCATACTGGACGAAGCGAGCGAGA
TCGGCGAGGCCCAACAGATTGGAGGTAGCGGGGGACGGACGGAGAAAGGT
GGGGATGGGAGTAACAGGATGTTATGGTCGTTTCCAGCGTTGCTGTGTGA
CATTGTATTCCTTTCCTGGATCTACATGAGCCTGGTGACGATGATGAAGA
TTCTGCGGGAGCAGAACGAGACGTACAAGCTCGAGTTGTACACCCGCCTG
TCTTCGACAATCCTCTTGTTTGTCACCCTCTTTGGATGTCTTACGCTTGT
GGTGCTCTTGTCGCGCATTGGCTTTTTTGTATGGCCGTGGACGCTGCTCT
GGGCCGAGACTGTTGCCTGGGAAGTCCTGAATTTCGCGGTCCTAGCTGCG
GTTTGTTTCTTATGGCGCCCATCACCCACTAGTCAATTTTTGGCGCAAGC
GAAGCAGCTACCGACGTCTGAGGAAGGAAGGGAAGGAGGAGGGGGGGATG
AGGAAGGGATTGAGTTCTCGATCGGTAGTCAGTTTAGTATCACTGATGAG
GACGAGGACGAGGATGAGGGAGGGAACGGCGACCTAAGAGTAGAAAGGAG
AGATGCTAGATTCTCATGAAAGGAAAAATATGAAGGGAGGTAATGAGGTT
ATACGTGTATGATGTTTTTAAGTGTTAATGACAAAAGGGGAAGGGCGAGG
TGGAAAATTACAAAGTTGGGCGATGGAGGAACGAAGATTTAGGTAGGATG
ATGGGGAGAAACGTTCAAGATAATTAAGAGACACAGGGGCCTCTCTCCCG
TTTCGACGGCGATAAAGCCGACGCAGTAGGACCCCGTCATAAAATAATTA
GAAAGAAAGAATCAAAGTCAGTGTCTAACTGGGGC

protein sequence of jgi.p|Nanoce1779_2|547470

>mRNA_9852-protein ID=mRNA_9852-protein|Name=jgi.p|Nanoce1779_2|547470|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MQPLPSILCPLLLLLTIAFLPLVSYAFKYQINDKYAETAKWSFTETYMYG
SGKGPLAWKDGDASVHLNLSLRISTYADEEYVNVSVLFYHEEDRSKSIGG
SASSEEGETAENEAGGAIFVPDADLCSLEFPPEASDRSLHTFAAHKVDEV
SGEGQEWEALVHADYKVLQSGVQNVLFQVCPSLMSLSSVALAGEISFKNP
YGYLPGRFYGYLPFEGARFFAFLAFFMLYLGMVVKHRKHLLRLHYAILGV
LVVATAEALSWFLAFSHMNSQGTPYCCPFPAVVISAMVFELIQKTASRAL
LLLICLGYGIARPSLQKGEWFSLGTLTLLYLGATILDEASEIGEAQQIGG
SGGRTEKGGDGSNRMLWSFPALLCDIVFLSWIYMSLVTMMKILREQNETY
KLELYTRLSSTILLFVTLFGCLTLVVLLSRIGFFVWPWTLLWAETVAWEV
LNFAVLAAVCFLWRPSPTSQFLAQAKQLPTSEEGREGGGGDEEGIEFSIG
SQFSITDEDEDEDEGGNGDLRVERRDARFS*

mRNA from alignment at scaffold_45:49140..51320+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9852 ID=mRNA_9852|Name=jgi.p|Nanoce1779_2|547470|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at scaffold_45:49140..51320+ (Nannochloropsis oceanica)
CAGGCACTTTAAGCTGGACCTCCTCGTGATAGCAACAGCAGTCCAAGAAG
TAGCGGGGGAAACTTGCTGCTCTACTCTCCCGTCCTGCCCTCTCTTTTTT
CCATTCCCACCGGCATCATCATCGTCATGCAGCCTCTCCCCTCCATTCTC
TGTCCCCTCCTCCTGCTCCTCACTATTGCCTTCCTCCCCCTTGTCAGCTA
CGCCTTCAAGTATCAAATCAATGATAAATATGCCGAAACGGCCAAGTGGT
CTTTCACCGAGACGTACATGTACGGGTCTGGCAAGGGGCCCCTCGCCTGG
AAAGATGGGGTAAATAAGTACAACCTTCGGTCCCTTCATCCCTCCCTCCA
TCCCTATTTCATGCTTCTTCTTTTTCCATCCCTTCCCTCTTATTCACTAT
CGCTTTTAAGACCATTATGATGGCACCGATATGGCATCCGACTCTCAACG
CGATCTCTTACATCCCCGCCCTTCATCGATCCATCCCTCCCATCCCTCGC
ATCAGGACGCCTCCGTGCATCTGAATCTCTCCCTCCGGATCTCCACTTAC
GCCGACGAAGAGTACGTCAATGTGTCTGTCCTCTTTTACCACGAAGAAGA
CAGAAGCAAAAGCATAGGTGGCAGCGCCAGCAGCGAGGAAGGGGAGACTG
CCGAGAACGAGGCAGGGGGAGCCATCTTCGTTCCTGATGCTGATTTGTGT
TCTCTTGAGTTTCCTCCGGAAGCCTCCGACCGTTCGCTCCACACGTTTGC
CGCACACAAAGTCGATGAAGTGAGTGGGGAGGGTCAGGAATGGGAGGCGC
TGGTGCATGCTGACTATAAGGTCTTGCAGAGTGGGGTCCAAAATGTGTTG
TTCCAAGTGTGTCCCTCCCTAATGTCCTTGTCCTCGGTGGCATTGGCTGG
GGAGATCAGTTTCAAGAATCCTTATGGGTACTTACCTGGAAGGTTCTACG
GTTATCTGCCTTTTGAGGGTGCGCGCTTTTTTGCGTTTTTGGCCTTTTTT
ATGCTTTACCTTGGGATGGTTGTTAAGCATCGCAAGCATTTGTTGCGATT
GCATTACGCGATTCTCGGGGTGTTGGTTGTGGCGACGGCGGAAGCATTGT
CATGGTTTCTGGCATTTTCGCACATGAACTCGCAAGGAACGCCGTACTGT
TGTCCATTTCCGGCGGTCGTGATAAGCGCGATGGTCTTCGAGTTAATTCA
GAAAACAGCGTCACGCGCTCTTTTGTTACTGATTTGTTTGGGGTACGGCA
TTGCGCGGCCGAGTTTGCAGAAGGGGGAATGGTTCAGTCTTGGGACTTTG
ACATTGTTGTATTTGGGTGCGACCATACTGGACGAAGCGAGCGAGATCGG
CGAGGCCCAACAGATTGGAGGTAGCGGGGGACGGACGGAGAAAGGTGGGG
ATGGGAGTAACAGGATGTTATGGTCGTTTCCAGCGTTGCTGTGTGACATT
GTATTCCTTTCCTGGATCTACATGAGCCTGGTGACGATGATGAAGATTCT
GCGGGAGCAGAACGAGACGTACAAGCTCGAGTTGTACACCCGCCTGTCTT
CGACAATCCTCTTGTTTGTCACCCTCTTTGGATGTCTTACGCTTGTGGTG
CTCTTGTCGCGCATTGGCTTTTTTGTATGGCCGTGGACGCTGCTCTGGGC
CGAGACTGTTGCCTGGGAAGTCCTGAATTTCGCGGTCCTAGCTGCGGTTT
GTTTCTTATGGCGCCCATCACCCACTAGTCAATTTTTGGCGCAAGCGAAG
CAGCTACCGACGTCTGAGGAAGGAAGGGAAGGAGGAGGGGGGGATGAGGA
AGGGATTGAGTTCTCGATCGGTAGTCAGTTTAGTATCACTGATGAGGACG
AGGACGAGGATGAGGGAGGGAACGGCGACCTAAGAGTAGAAAGGAGAGAT
GCTAGATTCTCATGAAAGGAAAAATATGAAGGGAGGTAATGAGGTTATAC
GTGTATGATGTTTTTAAGTGTTAATGACAAAAGGGGAAGGGCGAGGTGGA
AAATTACAAAGTTGGGCGATGGAGGAACGAAGATTTAGGTAGGATGATGG
GGAGAAACGTTCAAGATAATTAAGAGACACAGGGGCCTCTCTCCCGTTTC
GACGGCGATAAAGCCGACGCAGTAGGACCCCGTCATAAAATAATTAGAAA
GAAAGAATCAAAGTCAGTGTCTAACTGGGGC

Coding sequence (CDS) from alignment at scaffold_45:49140..51320+

>mRNA_9852 ID=mRNA_9852|Name=jgi.p|Nanoce1779_2|547470|organism=Nannochloropsis oceanica|type=CDS|length=3186bp|location=Sequence derived from alignment at scaffold_45:49140..51320+ (Nannochloropsis oceanica)
ATGCAGCCTCTCCCCTCCATTCTCTGTCCCCTCCTCCTGCTCCTCACTAT
TGCCTTCCTCCCCCTTGTCAGCTACGCCTTCAAGTATCAAATCAATGATA
AATATGCCGAAACGGCCAAGTGGTCTTTCACCGAGACGTACATGTACGGG
TCTGGCAAGGGGCCCCTCGCCTGGAAAGATGGGGACGCCTCCGTGCATCT
GAATCTCTCCCTCCGGATCTCCACTTACGCCGACGAAGAGTACGTCAATG
TGTCTGTCCTCTTTTACCACGAAGAAGACAGAAGCAAAAGCATAGGTGGC
AGCGCCAGCAGCGAGGAAGGGGAGACTGCCGAGAACGAGGCAGGGGGAGC
CATCTTCGTTCCTGATGCTGATTTGTGTTCTCTTGAGTTTCCTCCGGAAG
CCTCCGACCGTTCGCTCCACACGTTTGCCGCACACAAAGTCGATGAAGTG
AGTGGGGAGGGTCAGGAATGGGAGGCGCTGGTGCATGCTGACTATAAGGT
CTTGCAGAGTGGGGTCCAAAATGTGTTGTTCCAAGTGTGTCCCTCCCTAA
TGTCCTTGTCCTCGGTGGCATTGGCTGGGGAGATCAGTTTCAAGAATCCT
TATGGGTACTTACCTGGAAGGTTCTACGGTTATCTGCCTTTTGAGGGTGC
GCGCTTTTTTGCGTTTTTGGCCTTTTTTATGCTTTACCTTGGGATGGTTG
TTAAGCATCGCAAGCATTTGTTGCGATTGCATTACGCGATTCTCGGGGTG
TTGGTTGTGGCGACGGCGGAAGCATTGTCATGGTTTCTGGCATTTTCGCA
CATGAACTCGCAAGGAACGCCGTACTGTTGTCCATTTCCGGCGGTCGTGA
TAAGCGCGATGGTCTTCGAGTTAATTCAGAAAACAGCGTCACGCGCTCTT
TTGTTACTGATTTGTTTGGGGTACGGCATTGCGCGGCCGAGTTTGCAGAA
GGGGGAATGGTTCAGTCTTGGGACTTTGACATTGTTGTATTTGGGTGCGA
CCATACTGGACGAAGCGAGCGAGATCGGCGAGGCCCAACAGATTGGAGGT
AGCGGGGGACGGACGGAGAAAGGTGGGGATGGGAGTAACAGGATGTTATG
GTCGTTTCCAGCGTTGCTGTGTGACATTGTATTCCTTTCCTGGATCTACA
TGAGCCTGGTGACGATGATGAAGATTCTGCGGGAGCAGAACGAGACGTAC
AAGCTCGAGTTGTACACCCGCCTGTCTTCGACAATCCTCTTGTTTGTCAC
CCTCTTTGGATGTCTTACGCTTGTGGTGCTCTTGTCGCGCATTGGCTTTT
TTGTATGGCCGTGGACGCTGCTCTGGGCCGAGACTGTTGCCTGGGAAGTC
CTGAATTTCGCGGTCCTAGCTGCGGTTTGTTTCTTATGGCGCCCATCACC
CACTAGTCAATTTTTGGCGCAAGCGAAGCAGCTACCGACGTCTGAGGAAG
GAAGGGAAGGAGGAGGGGGGGATGAGGAAGGGATTGAGTTCTCGATCGGT
AGTCAGTTTAGTATCACTGATGAGGACGAGGACGAGGATGAGGGAGGGAA
CGGCGACCTAAGAGTAGAAAGGAGAGATGCTAGATTCTCATGAATGCAGC
CTCTCCCCTCCATTCTCTGTCCCCTCCTCCTGCTCCTCACTATTGCCTTC
CTCCCCCTTGTCAGCTACGCCTTCAAGTATCAAATCAATGATAAATATGC
CGAAACGGCCAAGTGGTCTTTCACCGAGACGTACATGTACGGGTCTGGCA
AGGGGCCCCTCGCCTGGAAAGATGGGGACGCCTCCGTGCATCTGAATCTC
TCCCTCCGGATCTCCACTTACGCCGACGAAGAGTACGTCAATGTGTCTGT
CCTCTTTTACCACGAAGAAGACAGAAGCAAAAGCATAGGTGGCAGCGCCA
GCAGCGAGGAAGGGGAGACTGCCGAGAACGAGGCAGGGGGAGCCATCTTC
GTTCCTGATGCTGATTTGTGTTCTCTTGAGTTTCCTCCGGAAGCCTCCGA
CCGTTCGCTCCACACGTTTGCCGCACACAAAGTCGATGAAGTGAGTGGGG
AGGGTCAGGAATGGGAGGCGCTGGTGCATGCTGACTATAAGGTCTTGCAG
AGTGGGGTCCAAAATGTGTTGTTCCAAGTGTGTCCCTCCCTAATGTCCTT
GTCCTCGGTGGCATTGGCTGGGGAGATCAGTTTCAAGAATCCTTATGGGT
ACTTACCTGGAAGGTTCTACGGTTATCTGCCTTTTGAGGGTGCGCGCTTT
TTTGCGTTTTTGGCCTTTTTTATGCTTTACCTTGGGATGGTTGTTAAGCA
TCGCAAGCATTTGTTGCGATTGCATTACGCGATTCTCGGGGTGTTGGTTG
TGGCGACGGCGGAAGCATTGTCATGGTTTCTGGCATTTTCGCACATGAAC
TCGCAAGGAACGCCGTACTGTTGTCCATTTCCGGCGGTCGTGATAAGCGC
GATGGTCTTCGAGTTAATTCAGAAAACAGCGTCACGCGCTCTTTTGTTAC
TGATTTGTTTGGGGTACGGCATTGCGCGGCCGAGTTTGCAGAAGGGGGAA
TGGTTCAGTCTTGGGACTTTGACATTGTTGTATTTGGGTGCGACCATACT
GGACGAAGCGAGCGAGATCGGCGAGGCCCAACAGATTGGAGGTAGCGGGG
GACGGACGGAGAAAGGTGGGGATGGGAGTAACAGGATGTTATGGTCGTTT
CCAGCGTTGCTGTGTGACATTGTATTCCTTTCCTGGATCTACATGAGCCT
GGTGACGATGATGAAGATTCTGCGGGAGCAGAACGAGACGTACAAGCTCG
AGTTGTACACCCGCCTGTCTTCGACAATCCTCTTGTTTGTCACCCTCTTT
GGATGTCTTACGCTTGTGGTGCTCTTGTCGCGCATTGGCTTTTTTGTATG
GCCGTGGACGCTGCTCTGGGCCGAGACTGTTGCCTGGGAAGTCCTGAATT
TCGCGGTCCTAGCTGCGGTTTGTTTCTTATGGCGCCCATCACCCACTAGT
CAATTTTTGGCGCAAGCGAAGCAGCTACCGACGTCTGAGGAAGGAAGGGA
AGGAGGAGGGGGGGATGAGGAAGGGATTGAGTTCTCGATCGGTAGTCAGT
TTAGTATCACTGATGAGGACGAGGACGAGGATGAGGGAGGGAACGGCGAC
CTAAGAGTAGAAAGGAGAGATGCTAGATTCTCATGA

Synonyms

Publications