jgi.p|Nanoce1779_2|574901, mRNA_985 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574901
Unique Name	mRNA_985
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1958
Alignment location	scaffold_2:932525..934482 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574987
Track	FilteredModels2
ProteinId	574901

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:932525..934482 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574901	gene_985	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574901	mRNA_985-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_985	CDS_985	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:932525..934482-
coding sequence from alignment at scaffold_2:932525..934482-

mRNA sequence

>mRNA_985 ID=mRNA_985|Name=jgi.p|Nanoce1779_2|574901|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp
CCGCCCTTCATTCGCAGCAGCAGCACAAGGCGAGGCAAGATGAGGATCCC
CTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCTGCTGGTGCTAG
GCTTGTCTTCCACCCGTCACGTGTAAGTTTGGACAAGGGAGGCAAAAAGG
CCGGAGGAAAGGTGCTTGGTTGGCCTGGCTACAGGGGAAGATGCAGGAAA
AGCCAGCTCGAGTGCATGATGTAGGCAGAAGCCTGCATTCATACGGCAAT
AAGGGAAAAGGGATATAGTTGTCTTGGTCCCACAAAAGGCTTGCGCTCAC
ATTAAGCTCTCACACGCCCCCCCTGCCTATCCACACAGTGGTGTTGCGGC
CTCGTCTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCATCCTGCGCGTTG
CCAGAGCTGGGCTTCAGTGCTCTTCGTCACCTTCAATATCAACAAACAGG
GATGCATCCCTGCCCTCTATCACCACCACCACCATCAAGAGTAGCAGTAG
AGGCAGCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGACAATTTTATGGG
TCGCAGGCAAAAAGGCCACGGGCGACAATGACTCCCCCAGCGACGACAAG
CCCAAGGTCAAATCACGGATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGA
AGAAGACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGAGGGGGCGGAAA
GAGGGGGAAGAGAGAGATCGACCGGCGAAGGGTATGCATACGACGAAGAC
GACCTCACTGACGATGTCAGGGCTATGTTGGCGGCTCCACCTAAGGAGCT
AGGGGAACTGTTGAAAGATGCGGGGATAGAATTTGGGGATCCGACGCTGA
TGGTAGATGATGATGGCCCTCTCGGCTTCAGGGCAGGGTTTGTCAGTATT
GTTGGGAGCCCGAATGTTGGGAAGAGCACGTTGATGAACTCCTTGGTAGG
GGAACGTGTATCGATAGTGACGTCAAAACAGCAGACAACAAGGCATCAGA
TCATGGGGGTGGTGACGGGGGGGGATTTCCAGATTGTTTATTATGATACC
CCGGGGGTTTTAAGGCCCAATTATAAATTGCAGGAAGGGATGATGGCGTT
TGTGAGGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTTGATGACGGATG
TGTTTGAAAACCCATCTGAATGGCCCGATCAGGAAATTTTTGAGCAGATG
CAGCGAAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAAATTGACTTATT
GCCGAACGCGACCCATCCGCAAGGGAACCTCGGGAAGGACGCCTTGGCAA
AGATCGGGAATTTGGAAGATGTGATTGGCCGGTGGCAAGCGGTACTGCCC
AATGCTGACATTATTCCTATTTCGGCTCATGAGCGATTGAATCTGGATGG
GCTGCTGCATAAGATTAAGCAGGATTTGCCATTATCCCCCCCTCTGTACC
CCAATGACACCTTGACTGACAAGCCGCAACGATTTTTTGCATCGGAGATT
ATTCGCGAGAAGGTTTTCACGGGATATAGTAAGGAGATACCTTATTCCTG
CGAGGTGGCTGTGACTGCGTTTAAGGACCAGGGGAGAATGATAAAGATCA
ATTCAACGATTTTTACGACGCGGGACTCGCATGTCCCGATTTTGATCGGG
ACGAAAGGCAATAAATTGAAGGAGGTGGGGACGTTGGCTCGCTTGGATTT
GGAAGAATTTTTTGGGAAGAAGGTTTATTTGGAGATGCGCGTGAAGGTGC
GTAAAGATTGGCGGACGAACATGAAGGATTTGTCGGCTTTTGGGTACATG
CAGCAAAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAATAGACAAAAGTA
AAGCAAATACTTTAAGGTTATAAGTATGAATATAATTTGGCTCGCATAAC
CGTGGGATGTTTTCTTCCCAGCAACGGATCCGACATGTATGCTTGTTACG
CTGTAGCG

protein sequence of jgi.p|Nanoce1779_2|574901

>mRNA_985-protein ID=mRNA_985-protein|Name=jgi.p|Nanoce1779_2|574901|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MKKGAKEEKKEEDLEEFLAGLNVEGAERGGRERSTGEGYAYDEDDLTDDV
RAMLAAPPKELGELLKDAGIEFGDPTLMVDDDGPLGFRAGFVSIVGSPNV
GKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTGGDFQIVYYDTPGVLRP
NYKLQEGMMAFVRESLGDADVVLLMTDVFENPSEWPDQEIFEQMQRSVRP
LLLAVNKIDLLPNATHPQGNLGKDALAKIGNLEDVIGRWQAVLPNADIIP
ISAHERLNLDGLLHKIKQDLPLSPPLYPNDTLTDKPQRFFASEIIREKVF
TGYSKEIPYSCEVAVTAFKDQGRMIKINSTIFTTRDSHVPILIGTKGNKL
KEVGTLARLDLEEFFGKKVYLEMRVKVRKDWRTNMKDLSAFGYMQQSGDA
GKEVGGNRQK*

mRNA from alignment at scaffold_2:932525..934482-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_985 ID=mRNA_985|Name=jgi.p|Nanoce1779_2|574901|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp|location=Sequence derived from alignment at scaffold_2:932525..934482- (Nannochloropsis oceanica)
CCGCCCTTCATTCGCAGCAGCAGCACAAGGCGAGGCAAGATGAGGATCCC
CTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCTGCTGGTGCTAG
GCTTGTCTTCCACCCGTCACGTGTAAGTTTGGACAAGGGAGGCAAAAAGG
CCGGAGGAAAGGTGCTTGGTTGGCCTGGCTACAGGGGAAGATGCAGGAAA
AGCCAGCTCGAGTGCATGATGTAGGCAGAAGCCTGCATTCATACGGCAAT
AAGGGAAAAGGGATATAGTTGTCTTGGTCCCACAAAAGGCTTGCGCTCAC
ATTAAGCTCTCACACGCCCCCCCTGCCTATCCACACAGTGGTGTTGCGGC
CTCGTCTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCATCCTGCGCGTTG
CCAGAGCTGGGCTTCAGTGCTCTTCGTCACCTTCAATATCAACAAACAGG
GATGCATCCCTGCCCTCTATCACCACCACCACCATCAAGAGTAGCAGTAG
AGGCAGCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGACAATTTTATGGG
TCGCAGGCAAAAAGGCCACGGGCGACAATGACTCCCCCAGCGACGACAAG
CCCAAGGTCAAATCACGGATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGA
AGAAGACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGAGGGGGCGGAAA
GAGGGGGAAGAGAGAGATCGACCGGCGAAGGGTATGCATACGACGAAGAC
GACCTCACTGACGATGTCAGGGCTATGTTGGCGGCTCCACCTAAGGAGCT
AGGGGAACTGTTGAAAGATGCGGGGATAGAATTTGGGGATCCGACGCTGA
TGGTAGATGATGATGGCCCTCTCGGCTTCAGGGCAGGGTTTGTCAGTATT
GTTGGGAGCCCGAATGTTGGGAAGAGCACGTTGATGAACTCCTTGGTAGG
GGAACGTGTATCGATAGTGACGTCAAAACAGCAGACAACAAGGCATCAGA
TCATGGGGGTGGTGACGGGGGGGGATTTCCAGATTGTTTATTATGATACC
CCGGGGGTTTTAAGGCCCAATTATAAATTGCAGGAAGGGATGATGGCGTT
TGTGAGGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTTGATGACGGATG
TGTTTGAAAACCCATCTGAATGGCCCGATCAGGAAATTTTTGAGCAGATG
CAGCGAAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAAATTGACTTATT
GCCGAACGCGACCCATCCGCAAGGGAACCTCGGGAAGGACGCCTTGGCAA
AGATCGGGAATTTGGAAGATGTGATTGGCCGGTGGCAAGCGGTACTGCCC
AATGCTGACATTATTCCTATTTCGGCTCATGAGCGATTGAATCTGGATGG
GCTGCTGCATAAGATTAAGCAGGATTTGCCATTATCCCCCCCTCTGTACC
CCAATGACACCTTGACTGACAAGCCGCAACGATTTTTTGCATCGGAGATT
ATTCGCGAGAAGGTTTTCACGGGATATAGTAAGGAGATACCTTATTCCTG
CGAGGTGGCTGTGACTGCGTTTAAGGACCAGGGGAGAATGATAAAGATCA
ATTCAACGATTTTTACGACGCGGGACTCGCATGTCCCGATTTTGATCGGG
ACGAAAGGCAATAAATTGAAGGAGGTGGGGACGTTGGCTCGCTTGGATTT
GGAAGAATTTTTTGGGAAGAAGGTTTATTTGGAGATGCGCGTGAAGGTGC
GTAAAGATTGGCGGACGAACATGAAGGATTTGTCGGCTTTTGGGTACATG
CAGCAAAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAATAGACAAAAGTA
AAGCAAATACTTTAAGGTTATAAGTATGAATATAATTTGGCTCGCATAAC
CGTGGGATGTTTTCTTCCCAGCAACGGATCCGACATGTATGCTTGTTACG
CTGTAGCG

Coding sequence (CDS) from alignment at scaffold_2:932525..934482-

>mRNA_985 ID=mRNA_985|Name=jgi.p|Nanoce1779_2|574901|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_2:932525..934482- (Nannochloropsis oceanica)
ATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGAAGAAGACTTAGAAGAATT
CCTCGCAGGGTTGAATGTAGAGGGGGCGGAAAGAGGGGGAAGAGAGAGAT
CGACCGGCGAAGGGTATGCATACGACGAAGACGACCTCACTGACGATGTC
AGGGCTATGTTGGCGGCTCCACCTAAGGAGCTAGGGGAACTGTTGAAAGA
TGCGGGGATAGAATTTGGGGATCCGACGCTGATGGTAGATGATGATGGCC
CTCTCGGCTTCAGGGCAGGGTTTGTCAGTATTGTTGGGAGCCCGAATGTT
GGGAAGAGCACGTTGATGAACTCCTTGGTAGGGGAACGTGTATCGATAGT
GACGTCAAAACAGCAGACAACAAGGCATCAGATCATGGGGGTGGTGACGG
GGGGGGATTTCCAGATTGTTTATTATGATACCCCGGGGGTTTTAAGGCCC
AATTATAAATTGCAGGAAGGGATGATGGCGTTTGTGAGGGAAAGTTTAGG
GGACGCCGATGTGGTGTTGTTGATGACGGATGTGTTTGAAAACCCATCTG
AATGGCCCGATCAGGAAATTTTTGAGCAGATGCAGCGAAGTGTACGGCCG
TTGTTGTTGGCGGTGAATAAAATTGACTTATTGCCGAACGCGACCCATCC
GCAAGGGAACCTCGGGAAGGACGCCTTGGCAAAGATCGGGAATTTGGAAG
ATGTGATTGGCCGGTGGCAAGCGGTACTGCCCAATGCTGACATTATTCCT
ATTTCGGCTCATGAGCGATTGAATCTGGATGGGCTGCTGCATAAGATTAA
GCAGGATTTGCCATTATCCCCCCCTCTGTACCCCAATGACACCTTGACTG
ACAAGCCGCAACGATTTTTTGCATCGGAGATTATTCGCGAGAAGGTTTTC
ACGGGATATAGTAAGGAGATACCTTATTCCTGCGAGGTGGCTGTGACTGC
GTTTAAGGACCAGGGGAGAATGATAAAGATCAATTCAACGATTTTTACGA
CGCGGGACTCGCATGTCCCGATTTTGATCGGGACGAAAGGCAATAAATTG
AAGGAGGTGGGGACGTTGGCTCGCTTGGATTTGGAAGAATTTTTTGGGAA
GAAGGTTTATTTGGAGATGCGCGTGAAGGTGCGTAAAGATTGGCGGACGA
ACATGAAGGATTTGTCGGCTTTTGGGTACATGCAGCAAAGCGGGGATGCG
GGCAAAGAGGTTGGTGGGAATAGACAAAAGTAA

Synonyms

Publications