jgi.p|Nanoce1779_2|560718, mRNA_9848 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560718
Unique Name	mRNA_9848
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1720
Alignment location	scaffold_45:33671..35713 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	560804
Track	FilteredModels2
ProteinId	560718

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:33671..35713 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560718	gene_9848	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560718	mRNA_9848-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9848	CDS_9848	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:33671..35713+
coding sequence from alignment at scaffold_45:33671..35713+

mRNA sequence

>mRNA_9848 ID=mRNA_9848|Name=jgi.p|Nanoce1779_2|560718|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp
ATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAA
GCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAAC
GCGAACTTCAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGAC
GGCAAGAACGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCA
CCCCTTCAAACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGA
GCGAACGCTTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGG
GAATGGAGTTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGA
GTGGATTAATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGG
AGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAAAAGGTGAGAGCGAGA
GGAAATAGGGAAGGGAGGGAGGCAAGGGGGGGGGGGAAGGAACGGAATCC
GATGCTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGA
AGCAGAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGCATATGGAA
CACGACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAACACGAAGA
GGTGACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAAATACAGGA
TGGAGACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGC
CCGGCGCTGGATGTATTGTATTTCTGTGAGGCATCCATGAAATTCTTCAA
GCATAAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCCGAGCGAGC
GACACCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGAGTATGTTC
GAAGTGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTGTGCTATTT
TGCGAAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGTGGACCCGT
TTTTGTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTCATCCGGTG
GGGTATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAATTTGGCGTG
TATCTTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCGGTTTCTGA
TAAATTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCG
GAGAAGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGC
GTCGCAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGCAGCTCCAT
TACCGGCGTTGTCGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACG
GAGGACATTGTGTCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTC
GGGACAGTACTTGATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAA
AGAAGTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGG
GCGCCACTGATTACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTC
CAAAGTACAGCCGCCTGAGTTGCAGCACCACGCGCGCACTGCTTGAGGAG
GGGTTGACGAAGAGGGTGTTAGGCTTGGGGAAGGTGTACAAAAGATGGAA
TACAGTAACAAGGGATAACAGAAAAAGAAAGAAATGAGTATTGACCATCG
AGAAGGTCGAAAGATGTCAG

protein sequence of jgi.p|Nanoce1779_2|560718

>mRNA_9848-protein ID=mRNA_9848-protein|Name=jgi.p|Nanoce1779_2|560718|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MTVGHAEKKRKHAAATKRQNSNGGDVPLTQQQKRELQRQQQQQQQRKSND
GKNGADEDDPSKHEDDHPFKRGSIIMVKWAADASERFCDVIERAQNEKTG
EWSYYVHYHDFNRRMDEWINIPSILKPPSVAGAEHKAMKEQLEREKVRAR
GNREGREARGGGKERNPMLGEATEEAGIRTRRQKQKGMDEEEVPLTAHME
HDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEG
PALDVLYFCEASMKFFKHKSELHRWLKKMNPSERHPPGNEIYRDSKLSMF
EVDGGEQKIYCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCEYDGRGFHPV
GYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSP
EKPLSDLGLVSYRSYWASQLLALLKTMYAEAAPLPALSIMDFAKRTSFVT
EDIVSTFTFLGLLRYISGQYLIFAPLELVEELAKKFPVKPPVVDPARLHW
APLITMDVKRDKWSIHSKVQPPELQHHARTA*

mRNA from alignment at scaffold_45:33671..35713+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9848 ID=mRNA_9848|Name=jgi.p|Nanoce1779_2|560718|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at scaffold_45:33671..35713+ (Nannochloropsis oceanica)
ATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAA
GCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAAC
GCGAACTTCAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGAC
GGCAAGAACGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCA
CCCCTTCAAACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGA
GCGAACGCTTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGG
GAATGGAGTTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGA
GTGGATTAATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGG
AGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAAAAGGTGAGAGCGAGA
GGAAATAGGGAAGGGAGGGAGGCAAGGGGGGGGGGGAAGGAACGGAATCC
GATGGTTGAAGCAGAGCGCGAATAGTTGCTTAAGTAAGCGTGAGCTCATC
GAGGCCATCTCCTCGTTCCAATTTCGTTTGATTTGACAGGAAATGCAGGA
GATACTTCCTCCCTCTCTCCATCCCTTCCTGCCATCCTCCCCCCCTTTCC
TCCTCTTCCTCAACAATTTGTTACAGATGTGATCCCATCCTGACATGTCA
CAAAGAGATGCCTTCTTCTTTGCATTTAACCTCACCTTTCTTCTTGCGTG
TTTCCCTCCCTCAGGAGCTAGCCGAGCAAGCCGAGAAGCTGGGCGAGGCC
ACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGAAGCAGAAGGGAATGGA
CGAAGAAGAGGTGCCGCTGACAGCGCATATGGAACACGACGAACACGAGG
GCCTGGACGAGGAACAGCTCAAGGAACACGAAGAGGTGACCAAGGTCAAG
AATGTCAAGTTTGTGGAGCTGGGGAAATACAGGATGGAGACCTGGTACTA
TTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGCCCGGCGCTGGATGTAT
TGTATTTCTGTGAGGCATCCATGAAATTCTTCAAGCATAAGTCGGAGCTG
CATCGGTGGCTGAAGAAGATGAATCCGAGCGAGCGACACCCGCCGGGAAA
TGAGATTTACAGGGATTCGAAGCTGAGTATGTTCGAAGTGGATGGGGGGG
AGCAGAAGATTTACTGTCAGAACCTGTGCTATTTTGCGAAGCTGTTCCTG
GATCACAAAACCTTGTTCTACGACGTGGACCCGTTTTTGTTCTATGTGTT
GTGTGAGTATGACGGACGGGGGTTTCATCCGGTGGGGTATTTCTCAAAGG
AGAAGTATTCAGACGCCGGCTTTAATTTGGCGTGTATCTTGACTTTTCCC
TCATATCAGCGTAAGGGCTATGGTCGGTTTCTGATAAATTTTAGCTACGA
ACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCGGAGAAGCCGCTGTCGG
ATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGCGTCGCAACTGCTGGCG
CTGCTGAAGACGATGTATGCCGAGGCAGCTCGTGAGGCTAGAAGGGAGGG
AAGGGGTGGGGGAGAGGTAGCATTACCGGCGTTGTCGATCATGGATTTTG
CGAAGCGGACGTCGTTTGTGACGGAGGACATTGTGTCGACCTTTACGTTC
TTGGGCTTGTTGCGCTATATCTCGGGACAGTACTTGATTTTTGCGCCGTT
GGAATTAGTGGAGGAGCTGGCAAAGAAGTTCCCGGTGAAGCCTCCCGTCG
TAGACCCTGCGCGGTTGCATTGGGCGCCACTGATTACCATGGACGTGAAG
AGGGACAAGTGGTCGATACATTCCAAAGTACAGCCGCCTGAGTTGCAGCA
CCACGCGCGCACTGCTTGAGGAGGGGTTGACGAAGAGGGTGTTAGGCTTG
GGGAAGGTGTACAAAAGATGGAATACAGTAACAAGGGATAACAGAAAAAG
AAAGAAATGAGTATTGACCATCGAGAAGGTCGAAAGATGTCAG

Coding sequence (CDS) from alignment at scaffold_45:33671..35713+

>mRNA_9848 ID=mRNA_9848|Name=jgi.p|Nanoce1779_2|560718|organism=Nannochloropsis oceanica|type=CDS|length=4788bp|location=Sequence derived from alignment at scaffold_45:33671..35713+ (Nannochloropsis oceanica)
ATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAA
GCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAAC
GCGAACTTCAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGAC
GGCAAGAACGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCA
CCCCTTCAAACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGA
GCGAACGCTTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGG
GAATGGAGTTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGA
GTGGATTAATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGG
AGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAAAAGGTGAGAGCGAGA
GGAAATAGGGAAGGGAGGGAGGCAAGGGGGGGGGGGAAGGAACGGAATCC
GATGCTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGA
AGCAGAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGCATATGGAA
CACGACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAACACGAAGA
GGTGACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAAATACAGGA
TGGAGACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGC
CCGGCGCTGGATGTATTGTATTTCTGTGAGGCATCCATGAAATTCTTCAA
GCATAAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCCGAGCGAGC
GACACCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGAGTATGTTC
GAAGTGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTGTGCTATTT
TGCGAAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGTGGACCCGT
TTTTGTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTCATCCGGTG
GGGTATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAATTTGGCGTG
TATCTTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCGGTTTCTGA
TAAATTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCG
GAGAAGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGC
GTCGCAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGCAGCTCCAT
TACCGGCGTTGTCGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACG
GAGGACATTGTGTCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTC
GGGACAGTACTTGATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAA
AGAAGTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGG
GCGCCACTGATTACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTC
CAAAGTACAGCCGCCTGAGTTGCAGCACCACGCGCGCACTGCTTGAATGA
CGGTGGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAAGCGT
CAGAACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAACGCGA
ACTTCAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGACGGCA
AGAACGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCACCCC
TTCAAACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGAGCGA
ACGCTTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGGGAAT
GGAGTTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGAGTGG
ATTAATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGGAGCA
CAAGGCGATGAAGGAGCAGTTGGAGCGGGAAAAGGTGAGAGCGAGAGGAA
ATAGGGAAGGGAGGGAGGCAAGGGGGGGGGGGAAGGAACGGAATCCGATG
CTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGAAGCA
GAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGCATATGGAACACG
ACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAACACGAAGAGGTG
ACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAAATACAGGATGGA
GACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGCCCGG
CGCTGGATGTATTGTATTTCTGTGAGGCATCCATGAAATTCTTCAAGCAT
AAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCCGAGCGAGCGACA
CCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGAGTATGTTCGAAG
TGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTGTGCTATTTTGCG
AAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGTGGACCCGTTTTT
GTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTCATCCGGTGGGGT
ATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAATTTGGCGTGTATC
TTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCGGTTTCTGATAAA
TTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCGGAGA
AGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGCGTCG
CAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGCAGCTCCATTACC
GGCGTTGTCGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACGGAGG
ACATTGTGTCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTCGGGA
CAGTACTTGATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAAAGAA
GTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGGGCGC
CACTGATTACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTCCAAA
GTACAGCCGCCTGAGTTGCAGCACCACGCGCGCACTGCTTGAATGACGGT
GGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAAGCGTCAGA
ACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAACGCGAACTT
CAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGACGGCAAGAA
CGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCACCCCTTCA
AACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGAGCGAACGC
TTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGGGAATGGAG
TTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGAGTGGATTA
ATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGGAGCACAAG
GCGATGAAGGAGCAGTTGGAGCGGGAAAAGGTGAGAGCGAGAGGAAATAG
GGAAGGGAGGGAGGCAAGGGGGGGGGGGAAGGAACGGAATCCGATGCTGG
GCGAGGCCACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGAAGCAGAAG
GGAATGGACGAAGAAGAGGTGCCGCTGACAGCGCATATGGAACACGACGA
ACACGAGGGCCTGGACGAGGAACAGCTCAAGGAACACGAAGAGGTGACCA
AGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAAATACAGGATGGAGACC
TGGTACTATTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGCCCGGCGCT
GGATGTATTGTATTTCTGTGAGGCATCCATGAAATTCTTCAAGCATAAGT
CGGAGCTGCATCGGTGGCTGAAGAAGATGAATCCGAGCGAGCGACACCCG
CCGGGAAATGAGATTTACAGGGATTCGAAGCTGAGTATGTTCGAAGTGGA
TGGGGGGGAGCAGAAGATTTACTGTCAGAACCTGTGCTATTTTGCGAAGC
TGTTCCTGGATCACAAAACCTTGTTCTACGACGTGGACCCGTTTTTGTTC
TATGTGTTGTGTGAGTATGACGGACGGGGGTTTCATCCGGTGGGGTATTT
CTCAAAGGAGAAGTATTCAGACGCCGGCTTTAATTTGGCGTGTATCTTGA
CTTTTCCCTCATATCAGCGTAAGGGCTATGGTCGGTTTCTGATAAATTTT
AGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCGGAGAAGCC
GCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGCGTCGCAAC
TGCTGGCGCTGCTGAAGACGATGTATGCCGAGGCAGCTCCATTACCGGCG
TTGTCGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACGGAGGACAT
TGTGTCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTCGGGACAGT
ACTTGATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAAAGAAGTTC
CCGGTGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGGGCGCCACT
GATTACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTCCAAAGTAC
AGCCGCCTGAGTTGCAGCACCACGCGCGCACTGCTTGA

Synonyms

Publications