jgi.p|Nanoce1779_2|609313, mRNA_9847 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609313
Unique Name	mRNA_9847
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	962
Alignment location	scaffold_45:30691..31652 -

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Properties


Property Name	Value
TranscriptId	609399
Track	FilteredModels2
ProteinId	609313

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:30691..31652 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609313	gene_9847	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609313	mRNA_9847-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9847	CDS_9847	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:30691..31652-
coding sequence from alignment at scaffold_45:30691..31652-

mRNA sequence

>mRNA_9847 ID=mRNA_9847|Name=jgi.p|Nanoce1779_2|609313|organism=Nannochloropsis oceanica|type=mRNA|length=962bp
TCCTCCCTCCCTCTGTCATACCCGCCTTCAGGCTGTGTGGGACAGGCGGC
CCATCCCGTGGAAGTCGCAATTTTGGAGGCTTTTGCCGAGGATAAGGAGG
AGAAGCTCCCCAACGCTCTCTCCTTGCCTACGCCATTGCCTTCTCTGCAT
CCTCCTCCTCGTCGCCCTCGGTCACGCTCTTTGCTGACAGGGCCGGGGAG
AGTGGGTGAAATCGTCACGCGTGGCCCCCACCTGATGACGGGCTATTGGC
AGCGGCCTGAAGCCACGGCAGCGGTGTTGATCTATCCTTCCCCCCCCCTT
CCCACCTCCCTCCCTCCTCCTGCCTCTGATGCGGCTCGTGTGAGAGATGA
GGAAGGATTGGAGGGAGGGAAGGAGGGTGGACCAGACAATCAAGGGCAGA
TGCCACTCGAAAGAGGAGGTCGAGGAATAGGAAGGGACGGAGGAGGACCC
TGGCTGCGTACCGGTGACTTGGGCATGATGGATAAAGAGGGAAATTTGCA
TCTAGTAGGACGCTTGGCGGACGTCATCCGCTCGGGCGGAGAGAAGATCA
TGGCCGCGGAAGTCGAAAGAGTCTTGTTAGAGCATCCTTCGGTGGCAGGA
GTGGCGGTCGTAGGGCTACCGGATCGGATATATGGAGAGAGGGTAGTAGC
GGTGGTGGTGTCCAGGAGTAGGGAGGGAGGGAGGGAAGAAGAGTTGCAGG
CTCATTGCCGGAAATTTTTGGCGGGGTACAAGGTGCCGAAAGAGGTGGTG
TTCAGAGATGTATTGCCTGTGACGGGGAGTGGGAAGGTGAGAAAGGCAGT
TCTAGCCAAGGAGTTGTCGGTCAAAGCACAAGAGGAGGAGAGGAAGGAGA
ACCGTCGATCGTTTCTGTAGAGGGGGGTGATTGATATGCGAGGCGAGAAA
CAAAGAAAGAATAGGAGCGTCATTGGCATGCAATACAAGTTAAATAAAAT
CGTGTAATGAAG

protein sequence of jgi.p|Nanoce1779_2|609313

>mRNA_9847-protein ID=mRNA_9847-protein|Name=jgi.p|Nanoce1779_2|609313|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MTGYWQRPEATAAVLIYPSPPLPTSLPPPASDAARVRDEEGLEGGKEGGP
DNQGQMPLERGGRGIGRDGGGPWLRTGDLGMMDKEGNLHLVGRLADVIRS
GGEKIMAAEVERVLLEHPSVAGVAVVGLPDRIYGERVVAVVVSRSREGGR
EEELQAHCRKFLAGYKVPKEVVFRDVLPVTGSGKVRKAVLAKELSVKAQE
EERKENRRSFL*

mRNA from alignment at scaffold_45:30691..31652-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9847 ID=mRNA_9847|Name=jgi.p|Nanoce1779_2|609313|organism=Nannochloropsis oceanica|type=mRNA|length=962bp|location=Sequence derived from alignment at scaffold_45:30691..31652- (Nannochloropsis oceanica)
TCCTCCCTCCCTCTGTCATACCCGCCTTCAGGCTGTGTGGGACAGGCGGC
CCATCCCGTGGAAGTCGCAATTTTGGAGGCTTTTGCCGAGGATAAGGAGG
AGAAGCTCCCCAACGCTCTCTCCTTGCCTACGCCATTGCCTTCTCTGCAT
CCTCCTCCTCGTCGCCCTCGGTCACGCTCTTTGCTGACAGGGCCGGGGAG
AGTGGGTGAAATCGTCACGCGTGGCCCCCACCTGATGACGGGCTATTGGC
AGCGGCCTGAAGCCACGGCAGCGGTGTTGATCTATCCTTCCCCCCCCCTT
CCCACCTCCCTCCCTCCTCCTGCCTCTGATGCGGCTCGTGTGAGAGATGA
GGAAGGATTGGAGGGAGGGAAGGAGGGTGGACCAGACAATCAAGGGCAGA
TGCCACTCGAAAGAGGAGGTCGAGGAATAGGAAGGGACGGAGGAGGACCC
TGGCTGCGTACCGGTGACTTGGGCATGATGGATAAAGAGGGAAATTTGCA
TCTAGTAGGACGCTTGGCGGACGTCATCCGCTCGGGCGGAGAGAAGATCA
TGGCCGCGGAAGTCGAAAGAGTCTTGTTAGAGCATCCTTCGGTGGCAGGA
GTGGCGGTCGTAGGGCTACCGGATCGGATATATGGAGAGAGGGTAGTAGC
GGTGGTGGTGTCCAGGAGTAGGGAGGGAGGGAGGGAAGAAGAGTTGCAGG
CTCATTGCCGGAAATTTTTGGCGGGGTACAAGGTGCCGAAAGAGGTGGTG
TTCAGAGATGTATTGCCTGTGACGGGGAGTGGGAAGGTGAGAAAGGCAGT
TCTAGCCAAGGAGTTGTCGGTCAAAGCACAAGAGGAGGAGAGGAAGGAGA
ACCGTCGATCGTTTCTGTAGAGGGGGGTGATTGATATGCGAGGCGAGAAA
CAAAGAAAGAATAGGAGCGTCATTGGCATGCAATACAAGTTAAATAAAAT
CGTGTAATGAAG

Coding sequence (CDS) from alignment at scaffold_45:30691..31652-

>mRNA_9847 ID=mRNA_9847|Name=jgi.p|Nanoce1779_2|609313|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_45:30691..31652- (Nannochloropsis oceanica)
ATGACGGGCTATTGGCAGCGGCCTGAAGCCACGGCAGCGGTGTTGATCTA
TCCTTCCCCCCCCCTTCCCACCTCCCTCCCTCCTCCTGCCTCTGATGCGG
CTCGTGTGAGAGATGAGGAAGGATTGGAGGGAGGGAAGGAGGGTGGACCA
GACAATCAAGGGCAGATGCCACTCGAAAGAGGAGGTCGAGGAATAGGAAG
GGACGGAGGAGGACCCTGGCTGCGTACCGGTGACTTGGGCATGATGGATA
AAGAGGGAAATTTGCATCTAGTAGGACGCTTGGCGGACGTCATCCGCTCG
GGCGGAGAGAAGATCATGGCCGCGGAAGTCGAAAGAGTCTTGTTAGAGCA
TCCTTCGGTGGCAGGAGTGGCGGTCGTAGGGCTACCGGATCGGATATATG
GAGAGAGGGTAGTAGCGGTGGTGGTGTCCAGGAGTAGGGAGGGAGGGAGG
GAAGAAGAGTTGCAGGCTCATTGCCGGAAATTTTTGGCGGGGTACAAGGT
GCCGAAAGAGGTGGTGTTCAGAGATGTATTGCCTGTGACGGGGAGTGGGA
AGGTGAGAAAGGCAGTTCTAGCCAAGGAGTTGTCGGTCAAAGCACAAGAG
GAGGAGAGGAAGGAGAACCGTCGATCGTTTCTGTAG

Synonyms

Publications