jgi.p|Nanoce1779_2|609287, mRNA_9842 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609287
Unique Name	mRNA_9842
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2685
Alignment location	scaffold_45:10676..13617 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609373
Track	FilteredModels2
ProteinId	609287

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:10676..13617 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609287	gene_9842	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609287	mRNA_9842-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9842	CDS_9842	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:10676..13617+
coding sequence from alignment at scaffold_45:10676..13617+

mRNA sequence

>mRNA_9842 ID=mRNA_9842|Name=jgi.p|Nanoce1779_2|609287|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp
GACCGTTTATGTCGATGTGCGTCATACCGTTGACTCCTCCTGTGTGTGCG
CACGCTATTATTCACAAAGTGGGACAAAGGAAGCCCGTATCTCTTGTTCG
CAATTTGTCCGCAATAAGACAATGCCCCTATCTTTCCCCTATTCTTTCCA
TGTCTATCGGCCGGAGAGGATTGGGGCGACTTCCCTAGCTTCTACTTCTT
TGCGTCACCCACAACCACACTCTACAGTAATGCCAGACGCTCCTCTTCTC
TCGCGGGACCGGACGGGCTTATCCTATGAAGAAGTTCTCGCCCTCTCCCC
AGGCGGCCAACAAAACCCAGCCCCGAACAGCCCACGCAACGACCAGCGTG
CAGGGACGGCCATGCTCAAATCCCCTCCAACCTCTCCGCGCAGTATCATG
TCCAACTTTAGTCGTGGGAAGAATAAAAGCCCCCAGGGTAACACTTCTCC
TCGTAGTCTTCCGTCAAGTCCTCCAAGGAGCCCGGGTAGTCCCAAAGGCT
TTTTCGCCGCTGCGGTGCGTCGGTGTGTCTCCCCTTTCGGGATCATACCC
GCCGAAGACACGAAAGGAAAGGAAGCCGACGACAGTGAAGGTGAAATAAA
GAAGATGCCAAGAAAAATGATGGTGGGTAGTGAATTGCATTGGCAACAGC
ATCAGCTACAGCCAGAGGGGGATGAGGGCCGTTTGACATTGACAAGTTCG
ATGTCTTTCCGACCTTTGGAGGAAGATCCCCAATGGGGATTGTTTTTGCC
CTTTGACAGCTTGGAGTTCTCGTTTGTGGGCGGCGCAATCGGAGTGTGCC
GGCCAGTTCCTGACGAGGTAATAGAGGAGGAGCTGGAAGATTGGGGGGAG
AAATATGGAAGTAAAACTTTCACGTTGTGTACTGAGTCGCCGCCTTCCCT
CCCTTCCCCTTCCACAGTTCTCCACGATCTACATATCCACTCTCACAATG
GTGAAGCCAACAATCCAACGCGTGACCGGCCTAGGCTCCATCTTCCTCGG
CACCAAAAAGAAGGAGGTCATGCTATGGGGGCAACCCCTCAAGCCTTTCA
CCTCCTCCTCTATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGAA
CCCCCCGCAGATGACCTTCGTCTCGCCGACCAAATGCTCCGCTTGGCTCT
CGTAGGCAATCCTCAGTGTTATTCATTCTGGTACCTCCAGTATTTCAATA
GCAAAGACGTGAGCCAACTGCTTGGGAGGAAGGAGGAAGGGAGGGAGGGG
GCGATGGCAGGGACGGGTGGAGAGGATAATTGTCGGCAAAGCCCAGCTAA
AAGGGAGGAAGGACCAGTAGTAGACTCCAGTCCTGCTGGAGAGGAGGGAA
AGATCAAAATGGAGGTGGACGTCCAGAACACCGAAGGCAAGGAGGAGGAA
GGGATGGAGGAAGAGAGTGTTATAGAAAACGATATTATCATCTCAAAAAT
TGAGTCGATGACAGGGACGCGTATCTTGGTTGCTCCCTATGAAGGAGGGA
AAGGCCTTAGAAGGTGTTTTTTGCTGATGGGAGAAGAAGAATTAGTCGCA
AAAGCCCGCAATCATCTGCAAGGGGCCATAACGCAGAAGATCTCGCCAAC
CGGCCGGGAGGTTGCGGCCTTGCTTGCGGGGCAGGAAGGGGGCAATGGAG
GGGGGGAAATCGATGAGAGGCTGGAAGAAATTCGGAAGGAGTTGCGGGAT
AAGCATCGGTTGAGGATGATGGAGGTGCAGCGTGACGGGAACTGTCTCTT
CCGTGCTCTTTCTGTCTTTGAGCACAAGACAGAAACGAAGCATCGGGCGG
TGCGTGCTGCCATCGTGGCCCGCTTAAAAGAAGCGCCCGAAGCAATGGAA
GTTACTGCATTGGTGGAAGGGATAACTAGCGAGGAATATTTGAGGAGGAT
GGCGGAAGATAGGCAATGGGGGGGGTATACCGAGTGCATGGCTTGGAGTG
AGGCTAGAAAGAAGCACGTGAGATTGTATGTGGAGAATGAGATGATTGGG
CTTAGGTGCACAGATATTGAATGCGCGGGTGTGGCAGAAGAGGAAGAGGG
GAAAGAAAAGGTGCGGGTGCAGTTGCTGTTGTACAAGTCGCATTATTGGT
TATGTATGAGGGGATGAATGAAAATGAGGGATAGAGGACGCTGTGGCTGC
GTCTTTTACCTACCACTAACCCTACATGAACATGACGGCCGAGGTGCGGG
CACGGGCTGTTGCGAGTGGGTTTGGGCCGACAATGGATGCGTTTGCCAAG
AATTTGACCTTTCACACGGAGGAGTTTACGAGGAGATTGTGGGAGAATTC
GCGTGCGCAGTACCAATCCAGCCATTTGTCTAACTTATTGGCTCGATTGG
ATTACAATGTTTTTTTTGCCGCTCAATTTGCTCGACCGACTTTGTCCTTA
TCGCCGGGGAGGCAGCAACAGCAACAGCAGCAGCAGCCTGTTTCGTGAGG
ATAGGAATAAGAGTGAAGGGTAAAGAGGAACAGAGGGAGGGGAGGGGCCT
TGACTGCAAACGGGATAATCGTAGATTGACCTGTGAGGAATGTATGTGTG
TCTGTACAACAAGCAACAGATGAAAGGGGCGTCAAGAATAGAAATGGCGT
AACCTCAAATGAAGGCAAGCACGTCAAAGAAAATTTCTTCGTCATACAGT
CTGAAGTACAGGCGTGTATGTGACTAACTACCTTT

protein sequence of jgi.p|Nanoce1779_2|609287

>mRNA_9842-protein ID=mRNA_9842-protein|Name=jgi.p|Nanoce1779_2|609287|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MEVKLSRCVLSRRLPSLPLPQFSTIYISTLTMVKPTIQRVTGLGSIFLGT
KKKEVMLWGQPLKPFTSSSISSSSSSSSSSSEPPADDLRLADQMLRLALV
GNPQCYSFWYLQYFNSKDVSQLLGRKEEGREGAMAGTGGEDNCRQSPAKR
EEGPVVDSSPAGEEGKIKMEVDVQNTEGKEEEGMEEESVIENDIIISKIE
SMTGTRILVAPYEGGKGLRRCFLLMGEEELVAKARNHLQGAITQKISPTG
REVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDGNCLFR
ALSVFEHKTETKHRAVRAAIVARLKEAPEAMEVTALVEGITSEEYLRRMA
EDRQWGGYTECMAWSEARKKHVRLYVENEMIGLRCTDIECAGVAEEEEGK
EKVRVQLLLYKSHYWLCMRG*

mRNA from alignment at scaffold_45:10676..13617+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9842 ID=mRNA_9842|Name=jgi.p|Nanoce1779_2|609287|organism=Nannochloropsis oceanica|type=mRNA|length=2942bp|location=Sequence derived from alignment at scaffold_45:10676..13617+ (Nannochloropsis oceanica)
GACCGTTTATGTCGATGTGCGTCATACCGTTGACTCCTCCTGTGTGTGCG
CACGCTATTATTCACAAAGTGGGACAAAGGAAGCCCGTATCTCTTGTTCG
CAATTTGTCCGCAATAAGACAATGCCCCTATCTTTCCCCTATTCTTTCCA
TGTCTATCGGCCGGAGAGGATTGGGGCGACTTCCCTAGCTTCTACTTCTT
TGCGTCACCCACAACCACACTCTACAGTAATGCCAGACGCTCCTCTTCTC
TCGCGGGACCGGACGGGCTTATCCTATGAAGAAGTTCTCGCCCTCTCCCC
AGGCGGCCAACAAAACCCAGCCCCGAACAGCCCACGCAACGACCAGCGTG
CAGGGACGGCCATGCTCAAATCCCCTCCAACCTCTCCGCGCAGTATCATG
TCCAACTTTAGTCGTGGGAAGAATAAAAGCCCCCAGGGTAACACTTCTCC
TCGTAGTCTTCCGTCAAGTCCTCCAAGGAGCCCGGGTAGTCCCAAAGGCT
TTTTCGCCGCTGCGGTGCGTCGGTGTGTCTCCCCTTTCGGGATCATACCC
GCCGAAGACACGAAAGGAAAGGAAGCCGACGACAGTGAAGGTGAAATAAA
GAAGATGCCAAGAAAAATGATGGTGGGTAGTGAATTGCATTGGCAACAGC
ATCAGCTACAGCCAGAGGGGGATGAGGGCCGTTTGACATTGACAAGTTCG
ATGTCTTTCCGACCTTTGGAGGAAGATCCCCAATGGGGATTGTTTTTGCC
CTTTGACAGCTTGGAGTTCTCGTTTGTGGGCGGCGCAATCGGAGTGTGCC
GGCCAGTTCCTGACGAGGTAATAGAGGAGGAGCTGGAAGATTGGGGGGAG
AAATATGGAAGTAAAACTTTCACGTTGTGTACTGAGTCGCCGCCTTCCCT
CCCTTCCCCTTCCACAGTTCTCCACGATCTACATATCCACTCTCACAATG
GTGAAGCCAACAATCCAACGCGTGACCGGCCTAGGCTCCATCTTCCTCGG
CACCAAAAAGAAGGAGGTCATGCTATGGGGGCAACCCCTCAAGCCTTTCA
CCTCCTCCTCTATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGAA
CCCCCCGCAGATGACCTTCGTCTCGCCGACCAAATGCTCCGCTTGGCTCT
CGTAGGCAATCCTCAGTGTTATTCATTCTGGTACCTCCAGTATTTCAATA
GCAAAGACGTGAGCCAACTGCTTGGGAGGAAGGAGGAAGGGAGGGAGGGG
GCGATGGCAGGGACGGGTGGAGAGGATAATTGTCGGCAAAGCCCAGCTAA
AAGGGAGGAAGGACCAGTAGTAGACTCCAGTCCTGCTGGAGAGGAGGGAA
AGATCAAAATGGAGGTGGACGTCCAGAACACCGAAGGCAAGGAGGAGGAA
GGGATGGAGGAAGAGAGTGTTATAGAAAACGATATTATCATCTCAAAAAT
TGAGTCGATGACAGGGACGCGTATCTTGGTTGCTCCCTATGAAGGAGGGA
AAGGCCTTAGAAGGTGTTTTTTGCTGATGGGAGAAGAAGAATTAGTCGCA
AAAGCCCGCAATCATCTGCAAGGGGCCATAACGCAGAAGATCTCGCCAAC
CGGCCGGGAGGTTGCGGCCTTGCTTGCGGGGCAGGAAGGGGGCAATGGAG
GGGGGGAAATCGATGAGAGGCTGGAAGAAATTCGGAAGGAGTTGCGGGAT
AAGCATCGGTTGAGGATGATGGAGGTGCAGGTGAGTGAGGAGAAAGAGGG
CTGGGAGGGCGGAAATGGCGAGGAGGAGGGAAATCTTTCCCCTTCGAATG
CAACCTGCCAAGCTAACTTGTGCTGTCTGCAAGCTCATGTCTTCTATCCT
CTGCGTACGATAATCTTTCACAATGTGTGACAGCAACTCTCGTTTTTGAA
TTTTAGGAATCTTTTAACACACGACCAAAACGAAGCACTGGCACGCTCAC
TCAATTTTCCCGAATCCATTCTTCCCTACCTTCATAGCGTGACGGGAACT
GTCTCTTCCGTGCTCTTTCTGTCTTTGAGCACAAGACAGAAACGAAGCAT
CGGGCGGTGCGTGCTGCCATCGTGGCCCGCTTAAAAGAAGCGCCCGAAGC
AATGGAAGTTACTGCATTGGTGGAAGGGATAACTAGCGAGGAATATTTGA
GGAGGATGGCGGAAGATAGGCAATGGGGGGGGTATACCGAGTGCATGGCT
TGGAGTGAGGCTAGAAAGAAGCACGTGAGATTGTATGTGGAGAATGAGAT
GATTGGGCTTAGGTGCACAGATATTGAATGCGCGGGTGTGGCAGAAGAGG
AAGAGGGGAAAGAAAAGGTGCGGGTGCAGTTGCTGTTGTACAAGTCGCAT
TATTGGTTATGTATGAGGGGATGAATGAAAATGAGGGATAGAGGACGCTG
TGGCTGCGTCTTTTACCTACCACTAACCCTACATGAACATGACGGCCGAG
GTGCGGGCACGGGCTGTTGCGAGTGGGTTTGGGCCGACAATGGATGCGTT
TGCCAAGAATTTGACCTTTCACACGGAGGAGTTTACGAGGAGATTGTGGG
AGAATTCGCGTGCGCAGTACCAATCCAGCCATTTGTCTAACTTATTGGCT
CGATTGGATTACAATGTTTTTTTTGCCGCTCAATTTGCTCGACCGACTTT
GTCCTTATCGCCGGGGAGGCAGCAACAGCAACAGCAGCAGCAGCCTGTTT
CGTGAGGATAGGAATAAGAGTGAAGGGTAAAGAGGAACAGAGGGAGGGGA
GGGGCCTTGACTGCAAACGGGATAATCGTAGATTGACCTGTGAGGAATGT
ATGTGTGTCTGTACAACAAGCAACAGATGAAAGGGGCGTCAAGAATAGAA
ATGGCGTAACCTCAAATGAAGGCAAGCACGTCAAAGAAAATTTCTTCGTC
ATACAGTCTGAAGTACAGGCGTGTATGTGACTAACTACCTTT

Coding sequence (CDS) from alignment at scaffold_45:10676..13617+

>mRNA_9842 ID=mRNA_9842|Name=jgi.p|Nanoce1779_2|609287|organism=Nannochloropsis oceanica|type=CDS|length=2526bp|location=Sequence derived from alignment at scaffold_45:10676..13617+ (Nannochloropsis oceanica)
ATGGAAGTAAAACTTTCACGTTGTGTACTGAGTCGCCGCCTTCCCTCCCT
TCCCCTTCCACAGTTCTCCACGATCTACATATCCACTCTCACAATGGTGA
AGCCAACAATCCAACGCGTGACCGGCCTAGGCTCCATCTTCCTCGGCACC
AAAAAGAAGGAGGTCATGCTATGGGGGCAACCCCTCAAGCCTTTCACCTC
CTCCTCTATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGAACCCC
CCGCAGATGACCTTCGTCTCGCCGACCAAATGCTCCGCTTGGCTCTCGTA
GGCAATCCTCAGTGTTATTCATTCTGGTACCTCCAGTATTTCAATAGCAA
AGACGTGAGCCAACTGCTTGGGAGGAAGGAGGAAGGGAGGGAGGGGGCGA
TGGCAGGGACGGGTGGAGAGGATAATTGTCGGCAAAGCCCAGCTAAAAGG
GAGGAAGGACCAGTAGTAGACTCCAGTCCTGCTGGAGAGGAGGGAAAGAT
CAAAATGGAGGTGGACGTCCAGAACACCGAAGGCAAGGAGGAGGAAGGGA
TGGAGGAAGAGAGTGTTATAGAAAACGATATTATCATCTCAAAAATTGAG
TCGATGACAGGGACGCGTATCTTGGTTGCTCCCTATGAAGGAGGGAAAGG
CCTTAGAAGGTGTTTTTTGCTGATGGGAGAAGAAGAATTAGTCGCAAAAG
CCCGCAATCATCTGCAAGGGGCCATAACGCAGAAGATCTCGCCAACCGGC
CGGGAGGTTGCGGCCTTGCTTGCGGGGCAGGAAGGGGGCAATGGAGGGGG
GGAAATCGATGAGAGGCTGGAAGAAATTCGGAAGGAGTTGCGGGATAAGC
ATCGGTTGAGGATGATGGAGGTGCAGCGTGACGGGAACTGTCTCTTCCGT
GCTCTTTCTGTCTTTGAGCACAAGACAGAAACGAAGCATCGGGCGGTGCG
TGCTGCCATCGTGGCCCGCTTAAAAGAAGCGCCCGAAGCAATGGAAGTTA
CTGCATTGGTGGAAGGGATAACTAGCGAGGAATATTTGAGGAGGATGGCG
GAAGATAGGCAATGGGGGGGGTATACCGAGTGCATGGCTTGGAGTGAGGC
TAGAAAGAAGCACGTGAGATTGTATGTGGAGAATGAGATGATTGGGCTTA
GGTGCACAGATATTGAATGCGCGGGTGTGGCAGAAGAGGAAGAGGGGAAA
GAAAAGGTGCGGGTGCAGTTGCTGTTGTACAAGTCGCATTATTGGTTATG
TATGAGGGGATGAATGGAAGTAAAACTTTCACGTTGTGTACTGAGTCGCC
GCCTTCCCTCCCTTCCCCTTCCACAGTTCTCCACGATCTACATATCCACT
CTCACAATGGTGAAGCCAACAATCCAACGCGTGACCGGCCTAGGCTCCAT
CTTCCTCGGCACCAAAAAGAAGGAGGTCATGCTATGGGGGCAACCCCTCA
AGCCTTTCACCTCCTCCTCTATCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCTGAACCCCCCGCAGATGACCTTCGTCTCGCCGACCAAATGCTCCG
CTTGGCTCTCGTAGGCAATCCTCAGTGTTATTCATTCTGGTACCTCCAGT
ATTTCAATAGCAAAGACGTGAGCCAACTGCTTGGGAGGAAGGAGGAAGGG
AGGGAGGGGGCGATGGCAGGGACGGGTGGAGAGGATAATTGTCGGCAAAG
CCCAGCTAAAAGGGAGGAAGGACCAGTAGTAGACTCCAGTCCTGCTGGAG
AGGAGGGAAAGATCAAAATGGAGGTGGACGTCCAGAACACCGAAGGCAAG
GAGGAGGAAGGGATGGAGGAAGAGAGTGTTATAGAAAACGATATTATCAT
CTCAAAAATTGAGTCGATGACAGGGACGCGTATCTTGGTTGCTCCCTATG
AAGGAGGGAAAGGCCTTAGAAGGTGTTTTTTGCTGATGGGAGAAGAAGAA
TTAGTCGCAAAAGCCCGCAATCATCTGCAAGGGGCCATAACGCAGAAGAT
CTCGCCAACCGGCCGGGAGGTTGCGGCCTTGCTTGCGGGGCAGGAAGGGG
GCAATGGAGGGGGGGAAATCGATGAGAGGCTGGAAGAAATTCGGAAGGAG
TTGCGGGATAAGCATCGGTTGAGGATGATGGAGGTGCAGCGTGACGGGAA
CTGTCTCTTCCGTGCTCTTTCTGTCTTTGAGCACAAGACAGAAACGAAGC
ATCGGGCGGTGCGTGCTGCCATCGTGGCCCGCTTAAAAGAAGCGCCCGAA
GCAATGGAAGTTACTGCATTGGTGGAAGGGATAACTAGCGAGGAATATTT
GAGGAGGATGGCGGAAGATAGGCAATGGGGGGGGTATACCGAGTGCATGG
CTTGGAGTGAGGCTAGAAAGAAGCACGTGAGATTGTATGTGGAGAATGAG
ATGATTGGGCTTAGGTGCACAGATATTGAATGCGCGGGTGTGGCAGAAGA
GGAAGAGGGGAAAGAAAAGGTGCGGGTGCAGTTGCTGTTGTACAAGTCGC
ATTATTGGTTATGTATGAGGGGATGA

Synonyms

Publications