jgi.p|Nanoce1779_2|609277, mRNA_9839 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609277
Unique NamemRNA_9839
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length576
Alignment locationscaffold_45:6308..6883 -

Link to JBrowse

Properties
Property NameValue
TranscriptId609363
TrackFilteredModels2
ProteinId609277
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:6308..6883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609277gene_9839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609277mRNA_9839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9839CDS_9839Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9839 ID=mRNA_9839|Name=jgi.p|Nanoce1779_2|609277|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGCCCCCGAGCCC
TTCGTGGAGCACAAGGAGGAATGCGCGGTATATTACGGCAACCGTGCCGC
TTGTTGGGTGCACATGGGCCGCGACCAGGAGGCTGTGGATGACTGCCGTG
TTGCTTTGAAGCTCAAACCTGGGTATTTGAAAGCATTAATGCGACGGGCA
CAGGCGTTTGAGAGGCTGGATAAGCTGGAGGATGCCTTGAGTGATTACAA
GGCCGTCCTGGCCATTGACCCTACGAATCGTGTGGCTCGTGGGAAGGTAC
CGGGGTTGGAAAAGGAATGCGCGGTGAGAATGGAGAAGCTAAAGGAGGAG
ACCTTGGGCAAGTTGAAAGATTTGGGAAATTCGGTATTGAGTAACTTTGG
CTTGAGCCTGGATAATTTCAAGATGCAACAGGATCCGAATACGGGGTCGT
ATAGTTTCAGTTTCCAAAAGTAGATGAGGGTGGGGTTCAGGGAGGGGAGG
GAGAAGTGGAGAGGAGGAGGGAAGGGAGGGAGGGAAAGGAGAGAGAAGGG
AGGGGAAAGAGATTTCCACTTTGTAT
back to top

protein sequence of jgi.p|Nanoce1779_2|609277

>mRNA_9839-protein ID=mRNA_9839-protein|Name=jgi.p|Nanoce1779_2|609277|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLA
IDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLD
NFKMQQDPNTGSYSFSFQK*
back to top

mRNA from alignment at scaffold_45:6308..6883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9839 ID=mRNA_9839|Name=jgi.p|Nanoce1779_2|609277|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at scaffold_45:6308..6883- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGCCCCCGAGCCC
TTCGTGGAGCACAAGGAGGAATGCGCGGTATATTACGGCAACCGTGCCGC
TTGTTGGGTGCACATGGGCCGCGACCAGGAGGCTGTGGATGACTGCCGTG
TTGCTTTGAAGCTCAAACCTGGGTATTTGAAAGCATTAATGCGACGGGCA
CAGGCGTTTGAGAGGCTGGATAAGCTGGAGGATGCCTTGAGTGATTACAA
GGCCGTCCTGGCCATTGACCCTACGAATCGTGTGGCTCGTGGGAAGGTAC
CGGGGTTGGAAAAGGAATGCGCGGTGAGAATGGAGAAGCTAAAGGAGGAG
ACCTTGGGCAAGTTGAAAGATTTGGGAAATTCGGTATTGAGTAACTTTGG
CTTGAGCCTGGATAATTTCAAGATGCAACAGGATCCGAATACGGGGTCGT
ATAGTTTCAGTTTCCAAAAGTAGATGAGGGTGGGGTTCAGGGAGGGGAGG
GAGAAGTGGAGAGGAGGAGGGAAGGGAGGGAGGGAAAGGAGAGAGAAGGG
AGGGGAAAGAGATTTCCACTTTGTAT
back to top

Coding sequence (CDS) from alignment at scaffold_45:6308..6883-

>mRNA_9839 ID=mRNA_9839|Name=jgi.p|Nanoce1779_2|609277|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_45:6308..6883- (Nannochloropsis oceanica)
ATGGGCCGCGACCAGGAGGCTGTGGATGACTGCCGTGTTGCTTTGAAGCT
CAAACCTGGGTATTTGAAAGCATTAATGCGACGGGCACAGGCGTTTGAGA
GGCTGGATAAGCTGGAGGATGCCTTGAGTGATTACAAGGCCGTCCTGGCC
ATTGACCCTACGAATCGTGTGGCTCGTGGGAAGGTACCGGGGTTGGAAAA
GGAATGCGCGGTGAGAATGGAGAAGCTAAAGGAGGAGACCTTGGGCAAGT
TGAAAGATTTGGGAAATTCGGTATTGAGTAACTTTGGCTTGAGCCTGGAT
AATTTCAAGATGCAACAGGATCCGAATACGGGGTCGTATAGTTTCAGTTT
CCAAAAGTAG
back to top
Synonyms
Publications