jgi.p|Nanoce1779_2|605672, mRNA_9836 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605672
Unique Name	mRNA_9836
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1184
Alignment location	scaffold_32:241939..243858 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605758
Track	FilteredModels2
ProteinId	605672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:241939..243858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605672	gene_9836	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605672	mRNA_9836-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9836	CDS_9836	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:241939..243858+
coding sequence from alignment at scaffold_32:241939..243858+

mRNA sequence

>mRNA_9836 ID=mRNA_9836|Name=jgi.p|Nanoce1779_2|605672|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
ACAGCTTCAAGTCAGCAAGCATGCAATATCGCAGAATATTGTTGGCTCGA
GGAGCACAAAAGCCTGTGGTCCCTCGCCCTGTATTCCTAATTGCTATGAC
GTACCTAGGGGTCGCCTGCACCTTGCCTTCGGCCGCCGCCTTCCTTCTAC
CAGCGGCAACCCCCACGCCCTTCTCTACCTCCTCCTCCTTCTCCCTCTCC
TCGTCCTCCGCATCGTCAGTATGCGGTAAGTTTTTCATAGGGAGCTTTGT
GGAAAAAAAAAAGCCTACCCTTGTGAAGGAAGGATTCAGGTTGGAAAATG
AAAGATGTATGACTGTGACAAGTAGCACCCTCCCCTCGCGGCTTGCCGCA
GAGAACATCAAGAAGAAAGGACTTTTTGTTCATGTTCCTGCCCTTTGGCT
TTTTTTATCTCTATGTACCAAGAAAGGCCGTCTCTTCTTGCGCTGCGTGG
CGGCAAGGGAGACAAGCAGCAGTACTACGAACGGGGCAAACAGCAGCTGC
AGCAGCGGCACGCTTGGTGGTACTCATGAAGGGGGGGAAAGGCGACGAAG
ACAAGGACTTGTCGGCAGAGTTCTCCCGGCGATTGGAGGATGAGGAGGAG
TCCCTCCCTCGTGTCCCCATCCGCAAGTCCTCGTCTCCTGCCCCCGGTGG
AGGGGTGCCTCAGAAAGTGGCTCAGCGCTCGTTTTCCACCATGCCCAAGA
CCCAGAGCTATAACAAGGAAGATGGCACGGATTATTGGATGGACGAGAAG
GTGTTGGAGGCCGAGAAGCGACGGAAGGCCAAGCGCAAGGCCCCTTCTCC
GGATCAATATCCTGCAGAGAAAATCAGGGAGGAGATCGTCTCGCCCTATA
AGAATAATTGGATCCTCTTTATAAGCATCACAATATTCTCCATCGCCTTT
TTCGCCTTCCTCTTCCCCGAGGAGCTGCAGATTCCTTCCATAACCATTCC
TGATTTTGAGACTGGTGCTGCTATTCCTGAGACGATCAAATAAACGCATT
GATTATTGAATGGATGAAAGGGGAAATCCTGCTTTTATTTAATGATTGAG
TGGTCTGGTTTGTTTGTAGTATGGCTGGGAAGGAAAAGCAAGAGGATAAG
GGAGGTGAGTGAGGGGGGGAAGAGGGAAAAGACTCTGTTTTTGTGCAAAA
AGTGCGAAAAGAATAATATTAACTTTGATAATAA

protein sequence of jgi.p|Nanoce1779_2|605672

>mRNA_9836-protein ID=mRNA_9836-protein|Name=jgi.p|Nanoce1779_2|605672|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MFLPFGFFYLYVPRKAVSSCAAWRQGRQAAVLRTGQTAAAAAARLVVLMK
GGKGDEDKDLSAEFSRRLEDEEESLPRVPIRKSSSPAPGGGVPQKVAQRS
FSTMPKTQSYNKEDGTDYWMDEKVLEAEKRRKAKRKAPSPDQYPAEKIRE
EIVSPYKNNWILFISITIFSIAFFAFLFPEELQIPSITIPDFETGAAIPE
TIK*

mRNA from alignment at scaffold_32:241939..243858+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9836 ID=mRNA_9836|Name=jgi.p|Nanoce1779_2|605672|organism=Nannochloropsis oceanica|type=mRNA|length=1920bp|location=Sequence derived from alignment at scaffold_32:241939..243858+ (Nannochloropsis oceanica)
ACAGCTTCAAGTCAGCAAGCATGCAATATCGCAGAATATTGTTGGCTCGA
GGAGCACAAAAGCCTGTGGTCCCTCGCCCTGTATTCCTAATTGCTATGAC
GTACCTAGGGGTCGCCTGCACCTTGCCTTCGGCCGCCGCCTTCCTTCTAC
CAGCGGCAACCCCCACGCCCTTCTCTACCTCCTCCTCCTTCTCCCTCTCC
TCGTCCTCCGCATCGTCAGTATGCGGTAAGTTTTTCATAGGGAGCTTTGT
GGAAAAAAAAAAGCCTACCCTTGTGAAGGAAGGATTCAGGTTGGAAAATG
AAAGATGTATGACTGTGACAAGTAGCACCCTCCCCTCGCGGCTTGCCGCA
GAGAACATCAAGAAGAAAGGACTTTTTGTTCATGTTCCTGCCCTTTGGCT
TTTTTTATCTCTATGTACCAAGAAAGGCCGTCTCTTCTTGCGCTGCGTGG
CGGCAAGGTAATATAAGGACGGTGCAGTGTGCCATGTCGTCGCCCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCCACGC
AGCTCATCATTTTCACTTCCAATCACGACAGGGAGACAAGCAGCAGTACT
ACGAACGGGGCAAACAGCAGCTGCAGCAGCGGCACGCTTGGTGGTACTCA
TGAAGGGGGGGAAAGGCGACGAAGACAAGGACTTGTCGGCAGAGTTCTCC
CGGCGATTGGAGGATGAGGAGGAGGTGAGGGAAAGGGGGAAGGAGGGTGG
AAGCGGAAGAGGTGAAAAACGAATCGATTGTTACTGATGATGAAGAGAAC
GGCCCAAATACATATGTCACCCCCCCCTCCCCCCCTCCTCCCTCCTCCTC
CCCCTCCTTCAGTCCCTCCCTCGTGTCCCCATCCGCAAGTCCTCGTCTCC
TGCCCCCGGTGGAGGGGTGCCTCAGAAAGTGGCTCAGCGCTCGTTTTCCA
CCATGCCCAAGACCCAGAGCTATAACAAGGAAGATGGTAAGGAGGGAGAG
AGGAAGGGGGGGGGAAAGGAGGGAGGGAGGAAAGTGTAGACGTGGCGGGA
ACTGTCATTTTAGTATCTCATTCTTCTTACCTTTTTCCCTCTCCTCTCTC
CCTCAACAGGCACGGATTATTGGATGGACGAGAAGGTGTTGGAGGCCGAG
AAGCGACGGAAGGCCAAGCGCAAGGTAGAGCCATCCTCCCTTCTGCCCTC
CTCCCTCCCGCCCTCCCTTCCGCCTTCAACCTTGTCTGCCCTTTCTTCGT
TGTATGACAAGTGTTTGGAATGTCCTGGTTAACGACGAGCATGAAATTTT
TCTCACACTCGATTGTTTCTCATTTCAATTGTGTGTAAATTTCTGTATGT
ATTTGTTTATGTATTTGTTAATTATTTATTTCTTGATATTCATTCATTCA
CCTACTCATTTACTTACGTTTAAATTTATCTGCATTCCTTTATTCGTGTA
ATTATATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTC
ATTTATTTATTTATTTACTCGACAGGCCCCTTCTCCGGATCAATATCCTG
CAGAGAAAATCAGGGAGGAGATCGTCTCGCCCTATAAGAATAATTGGATC
CTCTTTATAAGCATCACAATATTCTCCATCGCCTTTTTCGCCTTCCTCTT
CCCCGAGGAGCTGCAGATTCCTTCCATAACCATTCCTGATTTTGAGACTG
GTGCTGCTATTCCTGAGACGATCAAATAAACGCATTGATTATTGAATGGA
TGAAAGGGGAAATCCTGCTTTTATTTAATGATTGAGTGGTCTGGTTTGTT
TGTAGTATGGCTGGGAAGGAAAAGCAAGAGGATAAGGGAGGTGAGTGAGG
GGGGGAAGAGGGAAAAGACTCTGTTTTTGTGCAAAAAGTGCGAAAAGAAT
AATATTAACTTTGATAATAA

Coding sequence (CDS) from alignment at scaffold_32:241939..243858+

>mRNA_9836 ID=mRNA_9836|Name=jgi.p|Nanoce1779_2|605672|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_32:241939..243858+ (Nannochloropsis oceanica)
ATGTTCCTGCCCTTTGGCTTTTTTTATCTCTATGTACCAAGAAAGGCCGT
CTCTTCTTGCGCTGCGTGGCGGCAAGGGAGACAAGCAGCAGTACTACGAA
CGGGGCAAACAGCAGCTGCAGCAGCGGCACGCTTGGTGGTACTCATGAAG
GGGGGGAAAGGCGACGAAGACAAGGACTTGTCGGCAGAGTTCTCCCGGCG
ATTGGAGGATGAGGAGGAGTCCCTCCCTCGTGTCCCCATCCGCAAGTCCT
CGTCTCCTGCCCCCGGTGGAGGGGTGCCTCAGAAAGTGGCTCAGCGCTCG
TTTTCCACCATGCCCAAGACCCAGAGCTATAACAAGGAAGATGGCACGGA
TTATTGGATGGACGAGAAGGTGTTGGAGGCCGAGAAGCGACGGAAGGCCA
AGCGCAAGGCCCCTTCTCCGGATCAATATCCTGCAGAGAAAATCAGGGAG
GAGATCGTCTCGCCCTATAAGAATAATTGGATCCTCTTTATAAGCATCAC
AATATTCTCCATCGCCTTTTTCGCCTTCCTCTTCCCCGAGGAGCTGCAGA
TTCCTTCCATAACCATTCCTGATTTTGAGACTGGTGCTGCTATTCCTGAG
ACGATCAAATAAATGTTCCTGCCCTTTGGCTTTTTTTATCTCTATGTACC
AAGAAAGGCCGTCTCTTCTTGCGCTGCGTGGCGGCAAGGGAGACAAGCAG
CAGTACTACGAACGGGGCAAACAGCAGCTGCAGCAGCGGCACGCTTGGTG
GTACTCATGAAGGGGGGGAAAGGCGACGAAGACAAGGACTTGTCGGCAGA
GTTCTCCCGGCGATTGGAGGATGAGGAGGAGTCCCTCCCTCGTGTCCCCA
TCCGCAAGTCCTCGTCTCCTGCCCCCGGTGGAGGGGTGCCTCAGAAAGTG
GCTCAGCGCTCGTTTTCCACCATGCCCAAGACCCAGAGCTATAACAAGGA
AGATGGCACGGATTATTGGATGGACGAGAAGGTGTTGGAGGCCGAGAAGC
GACGGAAGGCCAAGCGCAAGGCCCCTTCTCCGGATCAATATCCTGCAGAG
AAAATCAGGGAGGAGATCGTCTCGCCCTATAAGAATAATTGGATCCTCTT
TATAAGCATCACAATATTCTCCATCGCCTTTTTCGCCTTCCTCTTCCCCG
AGGAGCTGCAGATTCCTTCCATAACCATTCCTGATTTTGAGACTGGTGCT
GCTATTCCTGAGACGATCAAATAAATGTTCCTGCCCTTTGGCTTTTTTTA
TCTCTATGTACCAAGAAAGGCCGTCTCTTCTTGCGCTGCGTGGCGGCAAG
GGAGACAAGCAGCAGTACTACGAACGGGGCAAACAGCAGCTGCAGCAGCG
GCACGCTTGGTGGTACTCATGAAGGGGGGGAAAGGCGACGAAGACAAGGA
CTTGTCGGCAGAGTTCTCCCGGCGATTGGAGGATGAGGAGGAGTCCCTCC
CTCGTGTCCCCATCCGCAAGTCCTCGTCTCCTGCCCCCGGTGGAGGGGTG
CCTCAGAAAGTGGCTCAGCGCTCGTTTTCCACCATGCCCAAGACCCAGAG
CTATAACAAGGAAGATGGCACGGATTATTGGATGGACGAGAAGGTGTTGG
AGGCCGAGAAGCGACGGAAGGCCAAGCGCAAGGCCCCTTCTCCGGATCAA
TATCCTGCAGAGAAAATCAGGGAGGAGATCGTCTCGCCCTATAAGAATAA
TTGGATCCTCTTTATAAGCATCACAATATTCTCCATCGCCTTTTTCGCCT
TCCTCTTCCCCGAGGAGCTGCAGATTCCTTCCATAACCATTCCTGATTTT
GAGACTGGTGCTGCTATTCCTGAGACGATCAAATAAATGTTCCTGCCCTT
TGGCTTTTTTTATCTCTATGTACCAAGAAAGGCCGTCTCTTCTTGCGCTG
CGTGGCGGCAAGGGAGACAAGCAGCAGTACTACGAACGGGGCAAACAGCA
GCTGCAGCAGCGGCACGCTTGGTGGTACTCATGAAGGGGGGGAAAGGCGA
CGAAGACAAGGACTTGTCGGCAGAGTTCTCCCGGCGATTGGAGGATGAGG
AGGAGTCCCTCCCTCGTGTCCCCATCCGCAAGTCCTCGTCTCCTGCCCCC
GGTGGAGGGGTGCCTCAGAAAGTGGCTCAGCGCTCGTTTTCCACCATGCC
CAAGACCCAGAGCTATAACAAGGAAGATGGCACGGATTATTGGATGGACG
AGAAGGTGTTGGAGGCCGAGAAGCGACGGAAGGCCAAGCGCAAGGCCCCT
TCTCCGGATCAATATCCTGCAGAGAAAATCAGGGAGGAGATCGTCTCGCC
CTATAAGAATAATTGGATCCTCTTTATAAGCATCACAATATTCTCCATCG
CCTTTTTCGCCTTCCTCTTCCCCGAGGAGCTGCAGATTCCTTCCATAACC
ATTCCTGATTTTGAGACTGGTGCTGCTATTCCTGAGACGATCAAATAAAT
GTTCCTGCCCTTTGGCTTTTTTTATCTCTATGTACCAAGAAAGGCCGTCT
CTTCTTGCGCTGCGTGGCGGCAAGGGAGACAAGCAGCAGTACTACGAACG
GGGCAAACAGCAGCTGCAGCAGCGGCACGCTTGGTGGTACTCATGAAGGG
GGGGAAAGGCGACGAAGACAAGGACTTGTCGGCAGAGTTCTCCCGGCGAT
TGGAGGATGAGGAGGAGTCCCTCCCTCGTGTCCCCATCCGCAAGTCCTCG
TCTCCTGCCCCCGGTGGAGGGGTGCCTCAGAAAGTGGCTCAGCGCTCGTT
TTCCACCATGCCCAAGACCCAGAGCTATAACAAGGAAGATGGCACGGATT
ATTGGATGGACGAGAAGGTGTTGGAGGCCGAGAAGCGACGGAAGGCCAAG
CGCAAGGCCCCTTCTCCGGATCAATATCCTGCAGAGAAAATCAGGGAGGA
GATCGTCTCGCCCTATAAGAATAATTGGATCCTCTTTATAAGCATCACAA
TATTCTCCATCGCCTTTTTCGCCTTCCTCTTCCCCGAGGAGCTGCAGATT
CCTTCCATAACCATTCCTGATTTTGAGACTGGTGCTGCTATTCCTGAGAC
GATCAAATAA

Synonyms

Publications