jgi.p|Nanoce1779_2|673918, mRNA_9835 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673918
Unique NamemRNA_9835
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length430
Alignment locationscaffold_32:241413..242444 -

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Properties
Property NameValue
TranscriptId674004
TrackFilteredModels2
ProteinId673918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:241413..242444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673918gene_9835Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673918mRNA_9835-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9835CDS_9835Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9835 ID=mRNA_9835|Name=jgi.p|Nanoce1779_2|673918|organism=Nannochloropsis oceanica|type=mRNA|length=430bp
AGGGAGGGAGGGGGCGACGACATGGCACACTGCACCGTCCTTATATTACC
TTGCCGCCACGCAGCGCAAGAAGAGACGGCCTTTCTTGGTACATAGAGAT
AAAAAAAGCCAAAGGGCAGGAACATGAACAAAAAGTCCTTTCTTCTTGAT
GTTCTCTGCGGCAAGCCGCGAGGGGAGGGTGCTACTTGTCACAGTCATAC
ATCTTTCATTTTCCAACCTGAATCCTTCCTTCACAAGGGTAGGCTTTTTT
TTTTCCACAAAGCTCCCTATGAAAAACTTACCGCATACTGACGATGCGGA
GGACGAGGAGAGGGAGAAGGAGGAGGAGGTAGAGAAGGGCGTGGGGGTTG
CCGCTGGTAGAAGGAAGGCGGCGGCCGAAGGCAAGGTGCAGGCGACCCCT
AGCGCCCTCGCCAAATATCGGCAAGGATAG
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protein sequence of jgi.p|Nanoce1779_2|673918

>mRNA_9835-protein ID=mRNA_9835-protein|Name=jgi.p|Nanoce1779_2|673918|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MFSAASREGRVLLVTVIHLSFSNLNPSFTRVGFFFSTKLPMKNLPHTDDA
EDEEREKEEEVEKGVGVAAGRRKAAAEGKVQATPSALAKYRQG*
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mRNA from alignment at scaffold_32:241413..242444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9835 ID=mRNA_9835|Name=jgi.p|Nanoce1779_2|673918|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp|location=Sequence derived from alignment at scaffold_32:241413..242444- (Nannochloropsis oceanica)
AGGGAGGGAGGGGGCGACGACATGGCACACTGCACCGTCCTTATATTACC
TTGCCGCCACGCAGCGCAAGAAGAGACGGCCTTTCTTGGTACATAGAGAT
AAAAAAAGCCAAAGGGCAGGAACATGAACAAAAAGTCCTTTCTTCTTGAT
GTTCTCTGCGGCAAGCCGCGAGGGGAGGGTGCTACTTGTCACAGTCATAC
ATCTTTCATTTTCCAACCTGAATCCTTCCTTCACAAGGGTAGGCTTTTTT
TTTTCCACAAAGCTCCCTATGAAAAACTTACCGCATACTGACGATGCGGA
GGACGAGGAGAGGGAGAAGGAGGAGGAGGTAGAGAAGGGCGTGGGGGTTG
CCGCTGGTAGAAGGAAGGCGGCGGCCGAAGGCAAGGTGCAGGCGACCCCT
AGGTACGTCATAGCAATTAGGAATACAGGGCGAGGGACCACAGGCTTTTG
TGCTCCTCGAGCCAACAATATTCTGCGATATTGCATGCTTGCTGACTTGA
AGCTGTAGGAAGACGGCGGGGATGATCAGGGGGGGAAGGGAGGGAGATGG
GTGAGGTTATGATGATAATCGATGACTGAAGCAGGCCACGGCGAGGGGAA
GCCTCCTGGCAATGCAGCTTCGATTTACTGGCGAACCTGTGCATGGTAGG
GTTCCAGACGAGGTGGAAGGATGGGTAGAGGACAGGGCCAGATGGCGTCC
AAGTTGCGTGTGCCAGATTAAAGTCGCGTAGCTTTGCAATTTTGCCATCC
TGCTTCTTCCTGCAGAGGGCGGGTAGTCAAGGTGATTGCTTTACATCCCA
TCATTTCTGCAACCTCGGACGCTGACTGGTGCAGAGGAAGGAGGACGAGG
TGCGGAGAAGTTGCCAGTGGTGTACGCACGTGAGTGGCGGAGGATTTTGG
TGCTTATCATTTCATTGAAGTCGGCATGAAGCAAGATGGACGCCGTCGTG
CGTGGACTTGTTCAGCTCGGGCTCGCTGCTTTTTTCCATGTCGTTCTTCC
TCAGCGCCCTCGCCAAATATCGGCAAGGATAG
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Coding sequence (CDS) from alignment at scaffold_32:241413..242444-

>mRNA_9835 ID=mRNA_9835|Name=jgi.p|Nanoce1779_2|673918|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_32:241413..242444- (Nannochloropsis oceanica)
CGCCCTCGCCAAATATCGGCAAGGATAGATGTTCTCTGCGGCAAGCCGCG
AGGGGAGGGTGCTACTTGTCACAGTCATACATCTTTCATTTTCCAACCTG
AATCCTTCCTTCACAAGGGTAGGCTTTTTTTTTTCCACAAAGCTCCCTAT
GAAAAACTTACCGCATACTGACGATGCGGAGGACGAGGAGAGGGAGAAGG
AGGAGGAGGTAGAGAAGGGCGTGGGGGTTGCCGCTGGTAGAAGGAAGGCG
GCGGCCGAAGGCAAGGTGCAGGCGACCCCTAGCGCCCTCGCCAAATATCG
GCAAGGATAGATGTTCTCTGCGGCAAGCCGCGAGGGGAGGGTGCTACTTG
TCACAGTCATACATCTTTCATTTTCCAACCTGAATCCTTCCTTCACAAGG
GTAGGCTTTTTTTTTTCCACAAAGCTCCCTATGAAAAACTTACCGCATAC
TGACGATGCGGAGGACGAGGAGAGGGAGAAGGAGGAGGAGGTAGAGAAGG
GCGTGGGGGTTGCCGCTGGTAGAAGGAAGGCGGCGGCCGAAGGCAAGGTG
CAGGCGACCCCTAG
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Synonyms
Publications