jgi.p|Nanoce1779_2|605648, mRNA_9830 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605648
Unique NamemRNA_9830
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length601
Alignment locationscaffold_32:221517..222741 -

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Properties
Property NameValue
TranscriptId605734
TrackFilteredModels2
ProteinId605648
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:221517..222741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605648gene_9830Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605648mRNA_9830-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9830CDS_9830Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9830 ID=mRNA_9830|Name=jgi.p|Nanoce1779_2|605648|organism=Nannochloropsis oceanica|type=mRNA|length=601bp
ACGATGTCTCCCAAGGTATCCATGCCTTTCTCCTCGAGGGACGCCACAGC
CGAGGCCAGGACCTCCTTCACTCCACTCTCCAGGCCGGGCCGGAGGGAGG
GCGCCCTTCCTCGTCGAGGCCATTTCGAGGAATAAGCCCAGCGCCACTGC
CGCCAAACGCTCCGCTTCATTCGCCGGGGGCTTGCGTGACGTCACTAGCA
ATGACGGCGCACCACTTCCTCCTCTTCCCCGTCTTCCTCCCCTCCCTTCT
CCTCTCTGGCTTTTGTCCTTGTCGGACTGGGTCTTTTTTGGTTGTCTGTA
ATCGTTGGGGGAAGGGAAGAGGGCACGGGCCAGGGCATGGATGTGGTCCA
TCTCGGCTTCCACGGCCGTGTGTTGGTGCTGGCGCTGTAAGGAGAGGAGG
CGGGCAAGACGCGTGGGAGGAAAGATGGAGTCGTTGAGGGTAGTGTACGT
GGAAGAGGACGAGGACGGGAGGGAGGCAGGGGTGGAGGGAGCCGGAGCAG
CAGCGTGGGTAAGCCGGGCAATATCACGCCAGAGAGCGGTAGTCGCCGCG
GTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCCTCTTCTCGTCATTTTGG
C
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protein sequence of jgi.p|Nanoce1779_2|605648

>mRNA_9830-protein ID=mRNA_9830-protein|Name=jgi.p|Nanoce1779_2|605648|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MTAHHFLLFPVFLPSLLLSGFCPCRTGSFLVVCNRWGKGRGHGPGHGCGP
SRLPRPCVGAGAVRRGGGQDAWEERWSR*
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mRNA from alignment at scaffold_32:221517..222741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9830 ID=mRNA_9830|Name=jgi.p|Nanoce1779_2|605648|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp|location=Sequence derived from alignment at scaffold_32:221517..222741- (Nannochloropsis oceanica)
ACGATGTCTCCCAAGGTATCCATGCCTTTCTCCTCGAGGGACGCCACAGC
CGAGGCCAGGACCTCCTTCACTCCACTCTCCAGGCCGGGCCGGAGGGAGG
GCGCTGGGGAGGGAGAGTTGGAGGGACGGGAGGGGGGGGGGAGGGACGCG
CCGTCGTTAAGTGCTTTGGAGAGGATGAGTAGGGCGAGGTGAGGCTTGTC
TACTGAGAGGAGGCAGGAGATGACAGAGGAGTAGCACCAGGAGTCTGGAG
GGAGGGGGGGGCTGGGAGAAGGGGAGGGAGGGAAGGAGGGAGGGGTGTGT
GTGAGGGGAGGAGGCCGAAGGTCACATTAGCGGGAGGTAGAGGAAGGGCG
AGGGGCAGTAATAATGGGATAGACAGATAGGGGTACGAAGTGAATGATGG
CAATCCCATAATATCGAGTGAAATAAAAGCATGCATGTCAACCCGCCCGG
CCCCACCCTCCTGCCCGCCCGTCCTCCCTCCCTCCCTCCCTCCTCCTCAC
CCCTTCCTCGTCGAGGCCATTTCGAGGAATAAGCCCAGCGCCACTGCCGC
CAAACGCTCCGCTTCATTCGCCGGGGGCTTGCGTGACGTCACTAGCAATG
ACGGCGCACCACTTCCTCCTCTTCCCCGTCTTCCTCCCCTCCCTTCTCCT
CTCTGGCTTTTGTCCTTGTCGGACTGGGTCTTTTTTGGTTGTCTGTAATC
GTTGGGGGAAGGGAAGAGGGCACGGGCCAGGGCATGGATGTGGTCCATCT
CGGCTTCCACGGCCGTGTGTTGGTGCTGGCGCTGTAAGGAGAGGAGGCGG
GCAAGACGCGTGGGAGGAAAGATGGAGTCGTTGAGGGTAGTGTACGTGGA
AGAGGACGAGGACGGGAGGGAGGCAGGGGTGGAGGGAGCCGGAGCAGCAG
CGTGGGTAAGCCGGGCAATATCACGCCAGAGAGCGGTAGTCGCCGCGGTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCCCTTCTCCACGGAGAAAGTTGT
GGTGGTGGCATGGAGGCGGAATAGGGAGGGAAGGGAGGGCAGGAGGGAGG
AAGGGGGAATGACGAAGGCTTGAGCGGAGCTGAGAATGAGTAATGCGACA
AAGGCTGTGTATGCATGTGCGTGTGGAGACATGTGGTGTTAGAAGCAGGG
GGCAGACACCCCTCCCCCCTCCCTCCCCTCCCTCCCTTCCCTCCTCCCTC
CTCCACCTCTTCTCGTCATTTTGGC
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Coding sequence (CDS) from alignment at scaffold_32:221517..222741-

>mRNA_9830 ID=mRNA_9830|Name=jgi.p|Nanoce1779_2|605648|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_32:221517..222741- (Nannochloropsis oceanica)
ATGACGGCGCACCACTTCCTCCTCTTCCCCGTCTTCCTCCCCTCCCTTCT
CCTCTCTGGCTTTTGTCCTTGTCGGACTGGGTCTTTTTTGGTTGTCTGTA
ATCGTTGGGGGAAGGGAAGAGGGCACGGGCCAGGGCATGGATGTGGTCCA
TCTCGGCTTCCACGGCCGTGTGTTGGTGCTGGCGCTGTAAGGAGAGGAGG
CGGGCAAGACGCGTGGGAGGAAAGATGGAGTCGTTGA
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Synonyms
Publications