jgi.p|Nanoce1779_2|262884, mRNA_9826 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|262884
Unique NamemRNA_9826
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length544
Alignment locationscaffold_32:212982..213525 +

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Properties
Property NameValue
TranscriptId262970
TrackFilteredModels2
ProteinId262884
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:212982..213525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262884gene_9826Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262884mRNA_9826-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9826CDS_9826Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9826 ID=mRNA_9826|Name=jgi.p|Nanoce1779_2|262884|organism=Nannochloropsis oceanica|type=mRNA|length=544bp
GGCGGAGTGTGTGAAGCGTGAGAACGACTGTGCATGAGACCATGTTGCGA
ATGCTTTCTTCTTCGTGGTGGTGGAGGAGAGGCAGCCGTGCGCCGTCCCC
ACAGCCACGTCTCAGGCACATTTACCAGCAGCCATCCCACAGCTTTTACC
CCTAGTTCAAACAAAGCTGAGAATATAGATGGAGACACCCCATCCAAGGC
CTTGGTGCCGGGACTTGATGCTTTCTGGCCTTCCACTACACAGCCATCCG
CTCCTCCTCCTCGCTGACCGTGCCGTTGCCATGGCGGCCGGCATTGACGA
GGGAGTCGCCCGCGCAGACTGTCCCACTCAGCCTGAACTTCTTATTCATT
ACCACGCTTGGCGCGAGAACTTGCACGATTCAGACAGCAGAGGACGCATG
TCTTTCTTTGAGATTCCCTGGAGCCTGTGGGGGGATGCTCCACGAAAGGG
AAGCGAGTTGTGAACGGGACGAGTGCAATTAATGCCTTTCCCCCCTCCTC
CCTCCTCCCTCCCCCCCTCCCTCCGCGTTCTCCCATTGGACCTC
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protein sequence of jgi.p|Nanoce1779_2|262884

>mRNA_9826-protein ID=mRNA_9826-protein|Name=jgi.p|Nanoce1779_2|262884|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
METPHPRPWCRDLMLSGLPLHSHPLLLLADRAVAMAAGIDEGVARADCPT
QPELLIHYHAWRENLHDSDSRGRMSFFEIPWSLWGDAPRKGSEL*
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mRNA from alignment at scaffold_32:212982..213525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9826 ID=mRNA_9826|Name=jgi.p|Nanoce1779_2|262884|organism=Nannochloropsis oceanica|type=mRNA|length=544bp|location=Sequence derived from alignment at scaffold_32:212982..213525+ (Nannochloropsis oceanica)
GGCGGAGTGTGTGAAGCGTGAGAACGACTGTGCATGAGACCATGTTGCGA
ATGCTTTCTTCTTCGTGGTGGTGGAGGAGAGGCAGCCGTGCGCCGTCCCC
ACAGCCACGTCTCAGGCACATTTACCAGCAGCCATCCCACAGCTTTTACC
CCTAGTTCAAACAAAGCTGAGAATATAGATGGAGACACCCCATCCAAGGC
CTTGGTGCCGGGACTTGATGCTTTCTGGCCTTCCACTACACAGCCATCCG
CTCCTCCTCCTCGCTGACCGTGCCGTTGCCATGGCGGCCGGCATTGACGA
GGGAGTCGCCCGCGCAGACTGTCCCACTCAGCCTGAACTTCTTATTCATT
ACCACGCTTGGCGCGAGAACTTGCACGATTCAGACAGCAGAGGACGCATG
TCTTTCTTTGAGATTCCCTGGAGCCTGTGGGGGGATGCTCCACGAAAGGG
AAGCGAGTTGTGAACGGGACGAGTGCAATTAATGCCTTTCCCCCCTCCTC
CCTCCTCCCTCCCCCCCTCCCTCCGCGTTCTCCCATTGGACCTC
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Coding sequence (CDS) from alignment at scaffold_32:212982..213525+

>mRNA_9826 ID=mRNA_9826|Name=jgi.p|Nanoce1779_2|262884|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_32:212982..213525+ (Nannochloropsis oceanica)
ATGGAGACACCCCATCCAAGGCCTTGGTGCCGGGACTTGATGCTTTCTGG
CCTTCCACTACACAGCCATCCGCTCCTCCTCCTCGCTGACCGTGCCGTTG
CCATGGCGGCCGGCATTGACGAGGGAGTCGCCCGCGCAGACTGTCCCACT
CAGCCTGAACTTCTTATTCATTACCACGCTTGGCGCGAGAACTTGCACGA
TTCAGACAGCAGAGGACGCATGTCTTTCTTTGAGATTCCCTGGAGCCTGT
GGGGGGATGCTCCACGAAAGGGAAGCGAGTTGTGA
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Synonyms
Publications