jgi.p|Nanoce1779_2|605628, mRNA_9825 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605628
Unique NamemRNA_9825
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length437
Alignment locationscaffold_32:211551..212955 -

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Properties
Property NameValue
TranscriptId605714
TrackFilteredModels2
ProteinId605628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:211551..212955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605628gene_9825Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605628mRNA_9825-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9825CDS_9825Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9825 ID=mRNA_9825|Name=jgi.p|Nanoce1779_2|605628|organism=Nannochloropsis oceanica|type=mRNA|length=437bp
ACAGGGGGGTCGTCGTTGTCCACAGGCAGCAGCTCCAGCCACTAGTCAGT
CATGACGAAGGGTACTTCGTCATTCGGGAAGCGCCACACTAAGACTCACA
CTGGCTGCCGCCGCTGTGGTCGTATCACCTTCCACAAGCAAAAGAAGGCC
TGTAGCTCCTGCGGTTTCCCCGAGGCCAAGATCCGCAAGTTCAACTGGTC
GGAGAAGGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCACACC
TCAAGGCCCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAGGGCACGGCC
GCCCCTGCCAAGAAGGTGGCTGCTGCTGCCTCTACTTAAGCAGTGGAATC
TCTCCGCCCTCCCTCCCGCCCTCCCTCCTCCTTTCCGCCCTCCCGCCCTC
CCTCCTCGTGATCGCGACTACGTGCATTGAGGAGATC
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protein sequence of jgi.p|Nanoce1779_2|605628

>mRNA_9825-protein ID=mRNA_9825-protein|Name=jgi.p|Nanoce1779_2|605628|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWS
EKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAST*
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mRNA from alignment at scaffold_32:211551..212955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9825 ID=mRNA_9825|Name=jgi.p|Nanoce1779_2|605628|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at scaffold_32:211551..212955- (Nannochloropsis oceanica)
ACAGGGGGGTCGTCGTTGTCCACAGGCAGCAGCTCCAGCCACTAGTCAGT
CATGGTACGTCCTTCTATCCCTCCCTCACTCCTCCCTCCCTCCCTCATCT
ATGTTTCGCCCAGCACCTTCATCAACCCCCTACGCCCCGAAGACCATGAA
CAATGTCCACGCACGACGATCTATCTCTTTGCCGTGTGTTGTCTGGATGG
CTGCATACCGCGTGTGCCATGAAAAGATGTCCTTGTAATTCCACCACACC
CGCATGCGGCTCCGTTGTGCCCCTGTGGGTGTTGCCCAACACCCCATTTC
TCTCCTATTTTGGACGCCACCCTCCCCTCCCCTCCTCCAACTATTCTAAT
CTTCCCGCCCTCCTTCCCTATCCATTCTCCTCCTCCTCACTACAGACGAA
GGGTACTTCGTCATTCGGGAAGCGCCACACTAAGACTCACACTGGCTGCC
GCCGCTGTGGTCGTATCACCTTCCACAAGCAAAAGAAGGCCTGTAGCTCC
TGCGGTTTCCCCGAGGCCAAGATCCGCAAGTGTACGTGAATTGATGGGGA
GGGAGAGAGGAAAGGAGAGAGTGGAGGGTGGTTCAGCAGGTGTTCCTGGC
TGCAGACAGCGAGGGAGGGTTGAGGTCGTCACCGAGGCCCAGGGCCTTAA
GCTATCTATGACTACCTGTCTTGTCTTTATCTGTCTGTTACAGTGTTATT
TATGAATGTCTGTCTTTGTCCCTCTGTAATAAATTCATTTATGACGATCT
GTCTAGATGTTTAATGCACGTCCGGGGGAGCAACAGGAGAGAGGGTGTGG
TTGTCGTTGCTGCCTCTCTTGTCAATTTGGGGCAGGAAAGACGGAAATGG
AAGGAGGGAGGGAAGGAAGGAGGGAAGGGGGGAGGTTAGCGCTGTTAAAG
ATAGGCGGGTCAAGAAAGTTGCAGAGAAGGATGAATTAATCGGCTGCTGG
TTAAAGTAGAGAGACATAGAGGCCCTTGGGCATGAAGGAGTGACACGCGC
ATATCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTCAACTG
GTCGGAGAAGGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCAC
ACCTCAAGGTACGCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTTCTGGC
TCGGCCCCCCCCCCCTCCCATGGAAACTAATCCACTCACCCTCCTCCTTT
CTCTCCTACCCTCCCTTCTTCAGGCCCTCCCTCGGAGGTTTAAGAATGGT
TTCCGCGAGGGCACGGCCGCCCCTGCCAAGAAGGTGGCTGCTGCTGCCTC
TACTTAAGCAGTGGAATCTCTCCGCCCTCCCTCCCGCCCTCCCTCCTCCT
TTCCGCCCTCCCGCCCTCCCTCCTCGTGATCGCGACTACGTGCATTGAGG
AGATC
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Coding sequence (CDS) from alignment at scaffold_32:211551..212955-

>mRNA_9825 ID=mRNA_9825|Name=jgi.p|Nanoce1779_2|605628|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_32:211551..212955- (Nannochloropsis oceanica)
GCCCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAGGGCACGGCCGCCCC
TGCCAAGAAGGTGGCTGCTGCTGCCTCTACTTAATCAACTGGTCGGAGAA
GGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCACACCTCAAGA
CGAAGGGTACTTCGTCATTCGGGAAGCGCCACACTAAGACTCACACTGGC
TGCCGCCGCTGTGGTCGTATCACCTTCCACAAGCAAAAGAAGGCCTGTAG
CTCCTGCGGTTTCCCCGAGGCCAAGATCCGCAAGTATGGCCCTCCCTCGG
AGGTTTAAGAATGGTTTCCGCGAGGGCACGGCCGCCCCTGCCAAGAAGGT
GGCTGCTGCTGCCTCTACTTAATCAACTGGTCGGAGAAGGCCAAGCGCAG
GAAGACTACCGGAACCGGCCGAATGGCACACCTCAAGACGAAGGGTACTT
CGTCATTCGGGAAGCGCCACACTAAGACTCACACTGGCTGCCGCCGCTGT
GGTCGTATCACCTTCCACAAGCAAAAGAAGGCCTGTAGCTCCTGCGGTTT
CCCCGAGGCCAAGATCCGCAAGTATGGCCCTCCCTCGGAGGTTTAAGAAT
GGTTTCCGCGAGGGCACGGCCGCCCCTGCCAAGAAGGTGGCTGCTGCTGC
CTCTACTTAATCAACTGGTCGGAGAAGGCCAAGCGCAGGAAGACTACCGG
AACCGGCCGAATGGCACACCTCAAGACGAAGGGTACTTCGTCATTCGGGA
AGCGCCACACTAAGACTCACACTGGCTGCCGCCGCTGTGGTCGTATCACC
TTCCACAAGCAAAAGAAGGCCTGTAGCTCCTGCGGTTTCCCCGAGGCCAA
GATCCGCAAGTATGGCCCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAG
GGCACGGCCGCCCCTGCCAAGAAGGTGGCTGCTGCTGCCTCTACTTAATC
AACTGGTCGGAGAAGGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAAT
GGCACACCTCAAGACGAAGGGTACTTCGTCATTCGGGAAGCGCCACACTA
AGACTCACACTGGCTGCCGCCGCTGTGGTCGTATCACCTTCCACAAGCAA
AAGAAGGCCTGTAGCTCCTGCGGTTTCCCCGAGGCCAAGATCCGCAAGTA
TG
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Synonyms
Publications