jgi.p|Nanoce1779_2|605626, mRNA_9824 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605626
Unique NamemRNA_9824
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length379
Alignment locationscaffold_32:210225..210703 +

Link to JBrowse

Properties
Property NameValue
TranscriptId605712
TrackFilteredModels2
ProteinId605626
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:210225..210703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605626gene_9824Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605626mRNA_9824-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9824CDS_9824Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9824 ID=mRNA_9824|Name=jgi.p|Nanoce1779_2|605626|organism=Nannochloropsis oceanica|type=mRNA|length=379bp
AGACAGCAAGCTCTGGCACACCAAGAGCAGCAAGCCGCACCGCCGGCTTC
TTGCCCTAGTTGCCCTGGTCCTGGCCGCCGCCGCCTCCCTCTGCGTCCAC
GCCCAAGATGGGGAGGGGAAGAGCAGCAGCAGCAGTACGACAAACACCTC
TTCTATCGGCAGCAGCAGGAGCAGCAACAGCAGCGATCATCCCCGTTGGA
ACCTCTCCTCTCCCCCTTCCTCCCTCCATCCCACCTGCTCCACCTCCACA
GGCGGGCCGCCGGGCGAGGGGCTCCTCCTCCTCTCCCTCCTCGCCCTCAC
CCTCAGCATCCTCCTCGCCTACCCCAACCCTACATTCTCCCTGCGAGCGG
TGTGGGAGGGGGGGAGGAAGGGAAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|605626

>mRNA_9824-protein ID=mRNA_9824-protein|Name=jgi.p|Nanoce1779_2|605626|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MGRGRAAAAVRQTPLLSAAAGAATAAIIPVGTSPLPLPPSIPPAPPPQAG
RRARGSSSSPSSPSPSASSSPTPTLHSPCERCGRGGGREG
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mRNA from alignment at scaffold_32:210225..210703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9824 ID=mRNA_9824|Name=jgi.p|Nanoce1779_2|605626|organism=Nannochloropsis oceanica|type=mRNA|length=479bp|location=Sequence derived from alignment at scaffold_32:210225..210703+ (Nannochloropsis oceanica)
AGACAGCAAGCTCTGGCACACCAAGAGCAGCAAGCCGCACCGTACGTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGATCCACCGACTCCCTCTC
CCGCGCTCCCTCCATTCTCCCTCCCTCCTCCCTCCCTCTAGGCCGGCTTC
TTGCCCTAGTTGCCCTGGTCCTGGCCGCCGCCGCCTCCCTCTGCGTCCAC
GCCCAAGATGGGGAGGGGAAGAGCAGCAGCAGCAGTACGACAAACACCTC
TTCTATCGGCAGCAGCAGGAGCAGCAACAGCAGCGATCATCCCCGTTGGA
ACCTCTCCTCTCCCCCTTCCTCCCTCCATCCCACCTGCTCCACCTCCACA
GGCGGGCCGCCGGGCGAGGGGCTCCTCCTCCTCTCCCTCCTCGCCCTCAC
CCTCAGCATCCTCCTCGCCTACCCCAACCCTACATTCTCCCTGCGAGCGG
TGTGGGAGGGGGGGAGGAAGGGAAGGAGG
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Coding sequence (CDS) from alignment at scaffold_32:210225..210703+

>mRNA_9824 ID=mRNA_9824|Name=jgi.p|Nanoce1779_2|605626|organism=Nannochloropsis oceanica|type=CDS|length=272bp|location=Sequence derived from alignment at scaffold_32:210225..210703+ (Nannochloropsis oceanica)
ATGGGGAGGGGAAGAGCAGCAGCAGCAGTACGACAAACACCTCTTCTATC
GGCAGCAGCAGGAGCAGCAACAGCAGCGATCATCCCCGTTGGAACCTCTC
CTCTCCCCCTTCCTCCCTCCATCCCACCTGCTCCACCTCCACAGGCGGGC
CGCCGGGCGAGGGGCTCCTCCTCCTCTCCCTCCTCGCCCTCACCCTCAGC
ATCCTCCTCGCCTACCCCAACCCTACATTCTCCCTGCGAGCGGTGTGGGA
GGGGGGGAGGAAGGGAAGGAGG
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Synonyms
Publications