jgi.p|Nanoce1779_2|263404, mRNA_9820 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|263404
Unique Name	mRNA_9820
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	909
Alignment location	scaffold_32:198066..198974 -

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Properties


Property Name	Value
TranscriptId	263490
Track	FilteredModels2
ProteinId	263404

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:198066..198974 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|263404	gene_9820	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|263404	mRNA_9820-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9820	CDS_9820	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:198066..198974-
coding sequence from alignment at scaffold_32:198066..198974-

mRNA sequence

>mRNA_9820 ID=mRNA_9820|Name=jgi.p|Nanoce1779_2|263404|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
AGGGAGGAAGGACGGAGGGGAGGATAACGGAAGAAAGAACACCGTAAAGA
GAGCACGACGGATAGATAGGCTTATTTTTTTCTTTTAGGGAGGGATGGTT
GCAGTAGTCCGCTGTTTACAAGAAACGCCATCAGTGTGAGTGGACCGTCG
AAGCCCATATCATACACGCGCGCGTTTCGATCCAAAATTGTCGACGTGGC
TGAGGGTGCTTTAGAGGATATCATCCATCGTCCATTTTCTCATGGCAGGA
AGCTGTGACTCAAGGCGTTGGTTTCTCTGTTTTTCTTTCATTTCTCTCGG
CGGTGCGTGCAGCTCGGATCTGGCTGTAGAGCTTTTTACGGCCTTGATAA
AACAAACAGCTCGCACCCAACGCGCACGTTACTTCAATGTTTGCTATTTG
GTATTAGTTGAAGACGATGTCACAAGGAAACAACGTAAAACCCTCCCATT
TAAAAAAAACAACCACGCACACCTTTCTCCGCACACAAGGGGATCGAACC
AGCCATCATATATGGGCCGCAGTCGCTCTCCCAGAGCCAAAAAAACAATT
GCAGGCACCGGGAATCGGACCCGGGCCTGGTCGATGGCAACGACCAATTC
TACCACTAAACTATGCCTGCGAGACAGATATCTTCGTGTGGAAGTTTCTT
TTTATGAACTACCCAGGATAATTCAGTCGTTTGGGAACATGCCCTTTGCT
GCCTCTTTAGATTTCCACATTAATTGGGTAAGATTCAATCATGCAATAGT
ACCCTCTAGAGACCTCTAGAGGCCATCTATGTCGTATTAAGCTTTTTCCA
TGTTATCATGGTGTCAGTTGATACACGACGAGGTCTCGTTGCGACAACGG
GCGAGGCCTTGCAGCCATAGTTCTCTCTGCGAATACGACAAATGACACAC
TCTCGTCCA

protein sequence of jgi.p|Nanoce1779_2|263404

>mRNA_9820-protein ID=mRNA_9820-protein|Name=jgi.p|Nanoce1779_2|263404|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MAGSCDSRRWFLCFSFISLGGACSSDLAVELFTALIKQTARTQRARYFNV
CYLVLVEDDVTRKQRKTLPFKKNNHAHLSPHTRGSNQPSYMGRSRSPRAK
KTIAGTGNRTRAWSMATTNSTTKLCLRDRYLRVEVSFYELPRIIQSFGNM
PFAASLDFHINWVRFNHAIVPSRDL*

mRNA from alignment at scaffold_32:198066..198974-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9820 ID=mRNA_9820|Name=jgi.p|Nanoce1779_2|263404|organism=Nannochloropsis oceanica|type=mRNA|length=909bp|location=Sequence derived from alignment at scaffold_32:198066..198974- (Nannochloropsis oceanica)
AGGGAGGAAGGACGGAGGGGAGGATAACGGAAGAAAGAACACCGTAAAGA
GAGCACGACGGATAGATAGGCTTATTTTTTTCTTTTAGGGAGGGATGGTT
GCAGTAGTCCGCTGTTTACAAGAAACGCCATCAGTGTGAGTGGACCGTCG
AAGCCCATATCATACACGCGCGCGTTTCGATCCAAAATTGTCGACGTGGC
TGAGGGTGCTTTAGAGGATATCATCCATCGTCCATTTTCTCATGGCAGGA
AGCTGTGACTCAAGGCGTTGGTTTCTCTGTTTTTCTTTCATTTCTCTCGG
CGGTGCGTGCAGCTCGGATCTGGCTGTAGAGCTTTTTACGGCCTTGATAA
AACAAACAGCTCGCACCCAACGCGCACGTTACTTCAATGTTTGCTATTTG
GTATTAGTTGAAGACGATGTCACAAGGAAACAACGTAAAACCCTCCCATT
TAAAAAAAACAACCACGCACACCTTTCTCCGCACACAAGGGGATCGAACC
AGCCATCATATATGGGCCGCAGTCGCTCTCCCAGAGCCAAAAAAACAATT
GCAGGCACCGGGAATCGGACCCGGGCCTGGTCGATGGCAACGACCAATTC
TACCACTAAACTATGCCTGCGAGACAGATATCTTCGTGTGGAAGTTTCTT
TTTATGAACTACCCAGGATAATTCAGTCGTTTGGGAACATGCCCTTTGCT
GCCTCTTTAGATTTCCACATTAATTGGGTAAGATTCAATCATGCAATAGT
ACCCTCTAGAGACCTCTAGAGGCCATCTATGTCGTATTAAGCTTTTTCCA
TGTTATCATGGTGTCAGTTGATACACGACGAGGTCTCGTTGCGACAACGG
GCGAGGCCTTGCAGCCATAGTTCTCTCTGCGAATACGACAAATGACACAC
TCTCGTCCA

Coding sequence (CDS) from alignment at scaffold_32:198066..198974-

>mRNA_9820 ID=mRNA_9820|Name=jgi.p|Nanoce1779_2|263404|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_32:198066..198974- (Nannochloropsis oceanica)
ATGGCAGGAAGCTGTGACTCAAGGCGTTGGTTTCTCTGTTTTTCTTTCAT
TTCTCTCGGCGGTGCGTGCAGCTCGGATCTGGCTGTAGAGCTTTTTACGG
CCTTGATAAAACAAACAGCTCGCACCCAACGCGCACGTTACTTCAATGTT
TGCTATTTGGTATTAGTTGAAGACGATGTCACAAGGAAACAACGTAAAAC
CCTCCCATTTAAAAAAAACAACCACGCACACCTTTCTCCGCACACAAGGG
GATCGAACCAGCCATCATATATGGGCCGCAGTCGCTCTCCCAGAGCCAAA
AAAACAATTGCAGGCACCGGGAATCGGACCCGGGCCTGGTCGATGGCAAC
GACCAATTCTACCACTAAACTATGCCTGCGAGACAGATATCTTCGTGTGG
AAGTTTCTTTTTATGAACTACCCAGGATAATTCAGTCGTTTGGGAACATG
CCCTTTGCTGCCTCTTTAGATTTCCACATTAATTGGGTAAGATTCAATCA
TGCAATAGTACCCTCTAGAGACCTCTAG

Synonyms

Publications