jgi.p|Nanoce1779_2|605603, mRNA_9817 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605603
Unique NamemRNA_9817
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length955
Alignment locationscaffold_32:184577..187063 -

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Properties
Property NameValue
TranscriptId605689
TrackFilteredModels2
ProteinId605603
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:184577..187063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605603gene_9817Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605603mRNA_9817-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9817CDS_9817Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9817 ID=mRNA_9817|Name=jgi.p|Nanoce1779_2|605603|organism=Nannochloropsis oceanica|type=mRNA|length=955bp
CGACCGGTGGGGGCGTGTCGCTGTTGAGGTTTGGCTTCAAGGAGGAAGAA
GGGGGCGAGGGAGGGGGGGAGGGAGGGGGGGTGTATTCCTCCTCGTCCTC
GTTTTGCTCTTCCTGCGGGGGAGGAGGCCAAGTGAGAGGAATGGAGACCT
CGCACTCGCCGAGAGGAGCCCAAGGCACGAGGGAGGGCGAGGAGGCGGAG
GGGGTGAGGAGGGTGTAGCAGTCCTCTGGAACCACCATCCCCTCCTCCTC
CTCCTCCTCCCCTCCTTCGCGGCTGCTGCTCAAAATAGGCTCGACACACC
ACCATTGATTGTCGTCAGGATGAAGTCCGGCCGCCTCCATGTGCTCAGCG
TGTTGCTCGTAGACGCCGTTGAAGGGGCCGAAGGAGAGATTGTGACAGGT
GGCAGCGGCCACCTCGGGAGGGGTAGCACAGTAGAGAAGGAAGGTGCATC
CCTGGGTGTGCTGGGCGTAGAACTCTCGGGTGGCGAGAGTGAAGGTGGTG
TTGGAGCAGTGGGAGATGATGACGGAAGAGGCGCAGGCACCGATGAAGAC
CTTGGAGTTGTTAACCTGATTAATCTTGACGCGATCCGTGTGATCGAGGA
GCAGGACCTCGCAGTCGTCCAGGGCGAGGCAATCGAAGGGCTGGCCGTTG
ATTTCTCCGGGTAGCTTGGTCAGACTTTCCCCAACCGAGTCACGGAAGGT
GAAGGAGGTCTCCATTTCGTACTTGCGATATTCGTCGAGGTTGGTAAAGA
CTGTGCCATCCGAAGCCCGATACTCCTTGCTATTCATCGCGGCAGCCTCC
ATCTCCCTTGTCCTTGTTTCTTCTATTGTCCTCTATAACTTCTTCCCTCC
CCTCTTTTCACGCTGCCCTTGCGCTGCTACTGCCGTTGCAGCGGCTGCTG
TTGCGGCTGGTGATGATGGTGGTGGAAGTAAAAATGACCTAGCCTCAGAA
CCTGT
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protein sequence of jgi.p|Nanoce1779_2|605603

>mRNA_9817-protein ID=mRNA_9817-protein|Name=jgi.p|Nanoce1779_2|605603|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MKSGRLHVLSVLLVDAVEGAEGEIVTGGSGHLGRGSTVEKEGASLGVLGV
ELSGGESEGGVGAVGDDDGRGAGTDEDLGVVNLINLDAIRVIEEQDLAVV
QGEAIEGLAVDFSG*
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mRNA from alignment at scaffold_32:184577..187063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9817 ID=mRNA_9817|Name=jgi.p|Nanoce1779_2|605603|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at scaffold_32:184577..187063- (Nannochloropsis oceanica)
CGACCGGTGGGGGCGTGTCGCTGTTGAGGTTTGGCTTCAAGGAGGAAGAA
GGGGGCGAGGGAGGGGGGGAGGGAGGGGGGGTGTATTCCTCCTCGTCCTC
GTTTTGCTCTTCCTGCTAGGAGGGAGGGAGGGAGGGAGGAAGGAGGGAGG
AGGGAGGAGGGAGGAGCGTCAAGCGGAGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGAGAGGGCACTTACCGGGGGAGGAGGCCAA
GTGAGAGGAATGGAGACCTCGCACTCGCCGAGAGGAGCCCAAGGCACGAG
GGAGGGCGAGGAGGCGGAGGGGGTGAGGAGGGTGTAGCAGTCCTACAGGG
GAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGGGTGAGTGAGA
AAGAAGATGCATGGGACAGTTCCTCGGACCAGCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTCTTCTTCCTTCTCTTCATCCCTACCTCTGGAAC
CACCATCCCCTCCTCCTCCTCCTCCTCCCCTCCTTCGCGGCTGCTGCTCA
AAATAGGCTCGACACACCACCATTGATTGTCTGACGGAGGGAGGGAGGGA
AAAAGGGAGGGTAGGGTGAGTTCTGGAGGGCATGGTGGCGGAGCCAGGAG
GGAGGGAGGGAGGAAGAGAGGGAGGGAGGGAGGGAGGGAGGAAGAGAGGG
AGGGAGGGAGGGAGGGAGGAAGAGAGGGAGGGAGGGAGGGAGGGAGGAAG
AGAGGGAGGGAGGGAGGGAGGGAGGAAGAGAGGGAGGGAGGAAGAGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGTACCGTCAGGATGAAGTCCGGCCGCCTCCATGTGCTC
AGCGTGTTGCTCGTAGACGCCTGGGCAGGGAGGGAGGAAGGGAGGGAGGA
AGGGAAAAAGGGGGTTAGAGCACATATGGCAGGGGCTTCAAGGAAGCCAA
TAGCAAGAGGAGGGAGGGAGGGAGGGAGGGAGGGCAGGTACCGTTGAAGG
GGCCGAAGGAGAGATTGTGACAGGTGGCAGCGGCCACCTCGGGAGGGGTA
GCACAGTAGAGAAGGAAGGTGCATCCCTAGGGAGGGAGGGAGGGAGGGAG
GGGGAGATGATTACGAGGGAGGGAGGAGATGTAAAAGTTGAGCAAAGTTG
AACATTAAAGGAGGGGGGGAGGGGGGGAGGGAGGGAGGGGCGGAACGCGC
CTGGGTGTGCTGGGCGTAGAACTCTCGGGTGGCGAGAGTGAAGGTGGTGT
TGGAGCAGTGGGAGATGATGACGGAAGAGGCGCAGGCACCGATGAAGACC
CTGGAGGGAATGAAGGCAGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGATGGAAGGGAGGGGGGTGAGGGAGGGAG
GAATGGTTCGGATGGGAGTAGTGGCCGAGGAGGAAAGAGTGGGATCGACG
AGCAGGGAGGGAGGGAAGGAGTGAGGGAGGGAGGGAGGACGTACTTGGAG
TTGTTAACCTGATTAATCTTGACGCGATCCGTGTGATCGAGGAGCAGGAC
CTCGCAGTCGTCCAGGGCTAGGGGGGTAATGGGGGAAGGGAGGCAAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGGGTACGGGAGTG
GTGAAGTCAGTGTCTTGTGTAAAGGAGGGAGAAAAGAATGAGAGAGGGAG
GAAAGGAGGGTTGTGGAAGTGATTGGTACAATGCAAAGAGAGGTGGCAGA
GGATGGGGGAAGGGAGGGAGGAAGTGAGGGAGGGAGGGAGGGAGGGAGGG
CGCGTCGTACCGAGGCAATCGAAGGGCTGGCCGTTGATTTCTCCGGGTAG
CTTGGTCAGACTTTCCCCAACCGAGTCACGGAAGGTGAAGGAGGTCTCCA
TTTCGTACTGTGGAGGGGAAGGAGGAGGGCGAGGGAGGGAGGGAGGACCA
AGTAGGGAGGGAGGGGGGGGGGTTAGATGCTGTGTCTCCTAATGCCTTAT
CACCGAGGCGCGACTATGCTCGCTCTCTCAATTCTACAAGAAATGAGCGA
TTGTTTTTTCGTGTTTTTCACATCCCCTCCCTCCGTCCCTCCCTCTATAC
CTCCCTCCCGTTCCCGATAATGCCGACAGCGCACCGAGCTCATCTCCCTG
CCTCCCCCTCTCCCTTTCTCCATCCCTCCCACATTCTCCTCCTCCTCCCT
CACCTTGCGATATTCGTCGAGGTTGGTAAAGACTGTGCCATCCGAAGCCC
GATACTCCTTGCTATTCATCGCGGCAGCCTCCATCTCCCTTGTCCTTGTT
TCTTCTATTGTCCTCTATAACTTCTTCCCTCCCCTCTTTTCACGCTGCCC
TTGCGCTGCTACTGCCGTTGCAGCGGCTGCTGTTGCGGCTGGTGATGATG
GTGGTGGAAGTAAAAATGACCTAGCCTCAGAACCTGT
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Coding sequence (CDS) from alignment at scaffold_32:184577..187063-

>mRNA_9817 ID=mRNA_9817|Name=jgi.p|Nanoce1779_2|605603|organism=Nannochloropsis oceanica|type=CDS|length=1725bp|location=Sequence derived from alignment at scaffold_32:184577..187063- (Nannochloropsis oceanica)
CGAGGCAATCGAAGGGCTGGCCGTTGATTTCTCCGGGTAGTTGGAGTTGT
TAACCTGATTAATCTTGACGCGATCCGTGTGATCGAGGAGCAGGACCTCG
CAGTCGTCCAGGGCTGGGTGTGCTGGGCGTAGAACTCTCGGGTGGCGAGA
GTGAAGGTGGTGTTGGAGCAGTGGGAGATGATGACGGAAGAGGCGCAGGC
ACCGATGAAGACCCGTTGAAGGGGCCGAAGGAGAGATTGTGACAGGTGGC
AGCGGCCACCTCGGGAGGGGTAGCACAGTAGAGAAGGAAGGTGCATCCAT
GAAGTCCGGCCGCCTCCATGTGCTCAGCGTGTTGCTCGTAGACGCCGAGG
CAATCGAAGGGCTGGCCGTTGATTTCTCCGGGTAGTTGGAGTTGTTAACC
TGATTAATCTTGACGCGATCCGTGTGATCGAGGAGCAGGACCTCGCAGTC
GTCCAGGGCTGGGTGTGCTGGGCGTAGAACTCTCGGGTGGCGAGAGTGAA
GGTGGTGTTGGAGCAGTGGGAGATGATGACGGAAGAGGCGCAGGCACCGA
TGAAGACCCGTTGAAGGGGCCGAAGGAGAGATTGTGACAGGTGGCAGCGG
CCACCTCGGGAGGGGTAGCACAGTAGAGAAGGAAGGTGCATCCATGAAGT
CCGGCCGCCTCCATGTGCTCAGCGTGTTGCTCGTAGACGCCGAGGCAATC
GAAGGGCTGGCCGTTGATTTCTCCGGGTAGTTGGAGTTGTTAACCTGATT
AATCTTGACGCGATCCGTGTGATCGAGGAGCAGGACCTCGCAGTCGTCCA
GGGCTGGGTGTGCTGGGCGTAGAACTCTCGGGTGGCGAGAGTGAAGGTGG
TGTTGGAGCAGTGGGAGATGATGACGGAAGAGGCGCAGGCACCGATGAAG
ACCCGTTGAAGGGGCCGAAGGAGAGATTGTGACAGGTGGCAGCGGCCACC
TCGGGAGGGGTAGCACAGTAGAGAAGGAAGGTGCATCCATGAAGTCCGGC
CGCCTCCATGTGCTCAGCGTGTTGCTCGTAGACGCCGAGGCAATCGAAGG
GCTGGCCGTTGATTTCTCCGGGTAGTTGGAGTTGTTAACCTGATTAATCT
TGACGCGATCCGTGTGATCGAGGAGCAGGACCTCGCAGTCGTCCAGGGCT
GGGTGTGCTGGGCGTAGAACTCTCGGGTGGCGAGAGTGAAGGTGGTGTTG
GAGCAGTGGGAGATGATGACGGAAGAGGCGCAGGCACCGATGAAGACCCG
TTGAAGGGGCCGAAGGAGAGATTGTGACAGGTGGCAGCGGCCACCTCGGG
AGGGGTAGCACAGTAGAGAAGGAAGGTGCATCCATGAAGTCCGGCCGCCT
CCATGTGCTCAGCGTGTTGCTCGTAGACGCCGAGGCAATCGAAGGGCTGG
CCGTTGATTTCTCCGGGTAGTTGGAGTTGTTAACCTGATTAATCTTGACG
CGATCCGTGTGATCGAGGAGCAGGACCTCGCAGTCGTCCAGGGCTGGGTG
TGCTGGGCGTAGAACTCTCGGGTGGCGAGAGTGAAGGTGGTGTTGGAGCA
GTGGGAGATGATGACGGAAGAGGCGCAGGCACCGATGAAGACCCGTTGAA
GGGGCCGAAGGAGAGATTGTGACAGGTGGCAGCGGCCACCTCGGGAGGGG
TAGCACAGTAGAGAAGGAAGGTGCATCCATGAAGTCCGGCCGCCTCCATG
TGCTCAGCGTGTTGCTCGTAGACGC
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Synonyms
Publications