jgi.p|Nanoce1779_2|673903, mRNA_9813 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673903
Unique NamemRNA_9813
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length600
Alignment locationscaffold_32:168437..169264 +

Link to JBrowse

Properties
Property NameValue
TranscriptId673989
TrackFilteredModels2
ProteinId673903
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:168437..169264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673903gene_9813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673903mRNA_9813-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9813CDS_9813Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9813 ID=mRNA_9813|Name=jgi.p|Nanoce1779_2|673903|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
CACAGGTATCTGATCATGCCCCAACCACCACCTCCACCACCGCCAAGACA
AACAAGACGGCGGCGAACCTCCTTTGTCCACGCCCTCCTCCTTCCCCTCG
CCCTCTTCCTCCTCCTCCTTCCCCCCGTCCTTGATGCCACCGCCTTGCCT
CGGGCCTTGTTTCACCACTTTCGCCTCACAATGAATGGACACCGCTGGCT
TGCTGACGGAGGACTATCCGCTATTCTTCTCTCTCTCCCTTCCTCCCCTC
CTCCCTCCCATCCTCGATCCCTGCTAGCCGCTCCTGCCACTGGTGAGGCT
GGTAGCGATGCTGCTGGTGCGGCGGGAATGAGTGAGAAAATGACGGAGGA
AGCAAAAAGAATGGCAGAGAATGAGAGGAACTCCAAGACTGCTTCTCTCA
TCACTCCTCCCACCACTGAGGGAGGGAGGGAGGAAGGGCAAGCAGCTGCT
GCTGGTGCCGCTACTTCTCCTGCTGCTCTTGTTGGCAAGACGACTGCCGA
AAGCCCAGCCGAGACTTGCTACCACGCAGTGATGTGCAAGGAGTGGAGGG
CAGTGGCAACAGAAGCAGCAGCAGCAGCAGGAGGAGAGGAGGCGGACGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|673903

>mRNA_9813-protein ID=mRNA_9813-protein|Name=jgi.p|Nanoce1779_2|673903|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MPQPPPPPPPRQTRRRRTSFVHALLLPLALFLLLLPPVLDATALPRALFH
HFRLTMNGHRWLADGGLSAILLSLPSSPPPSHPRSLLAAPATGEAGSDAA
GAAGMSEKMTEEAKRMAENERNSKTASLITPPTTEGGREEGQAAAAGAAT
SPAALVGKTTAESPAETCYHAVMCKEWRAVATEAAAAAGGEEADG
back to top

mRNA from alignment at scaffold_32:168437..169264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9813 ID=mRNA_9813|Name=jgi.p|Nanoce1779_2|673903|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_32:168437..169264+ (Nannochloropsis oceanica)
CACAGGTATCTGATCATGCCCCAACCACCACCTCCACCACCGCCAAGACA
AACAAGACGGCGGCGAACCTCCTTTGTCCACGGTGCGTGCGTATTATAGT
CCTTGTCCCCCCCACCATCCCCTTTTTGTTTGCTGCATACGCCTTCCCAT
CGAGCATCCCGCTGCAATACTCCAAACCTCATACCTCTTCCCCCTATTGT
ATGCCCGGCCTCCTTTACTATCGCGCATAATAATTTCGCATCATTTGTCT
TATCCACCATTATCTCCTTCCATTTCTTTCCCCTTTCTCTCCTCCTCTAC
ATGACAACAGCCCTCCTCCTTCCCCTCGCCCTCTTCCTCCTCCTCCTTCC
CCCCGTCCTTGATGCCACCGCCTTGCCTCGGGCCTTGTTTCACCACTTTC
GCCTCACAATGAATGGACACCGCTGGCTTGCTGACGGAGGACTATCCGCT
ATTCTTCTCTCTCTCCCTTCCTCCCCTCCTCCCTCCCATCCTCGATCCCT
GCTAGCCGCTCCTGCCACTGGTGAGGCTGGTAGCGATGCTGCTGGTGCGG
CGGGAATGAGTGAGAAAATGACGGAGGAAGCAAAAAGAATGGCAGAGAAT
GAGAGGAACTCCAAGACTGCTTCTCTCATCACTCCTCCCACCACTGAGGG
AGGGAGGGAGGAAGGGCAAGCAGCTGCTGCTGGTGCCGCTACTTCTCCTG
CTGCTCTTGTTGGCAAGACGACTGCCGAAAGCCCAGCCGAGACTTGCTAC
CACGCAGTGATGTGCAAGGAGTGGAGGGCAGTGGCAACAGAAGCAGCAGC
AGCAGCAGGAGGAGAGGAGGCGGACGGG
back to top

Coding sequence (CDS) from alignment at scaffold_32:168437..169264+

>mRNA_9813 ID=mRNA_9813|Name=jgi.p|Nanoce1779_2|673903|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_32:168437..169264+ (Nannochloropsis oceanica)
ATGCCCCAACCACCACCTCCACCACCGCCAAGACAAACAAGACGGCGGCG
AACCTCCTTTGTCCACGCCCTCCTCCTTCCCCTCGCCCTCTTCCTCCTCC
TCCTTCCCCCCGTCCTTGATGCCACCGCCTTGCCTCGGGCCTTGTTTCAC
CACTTTCGCCTCACAATGAATGGACACCGCTGGCTTGCTGACGGAGGACT
ATCCGCTATTCTTCTCTCTCTCCCTTCCTCCCCTCCTCCCTCCCATCCTC
GATCCCTGCTAGCCGCTCCTGCCACTGGTGAGGCTGGTAGCGATGCTGCT
GGTGCGGCGGGAATGAGTGAGAAAATGACGGAGGAAGCAAAAAGAATGGC
AGAGAATGAGAGGAACTCCAAGACTGCTTCTCTCATCACTCCTCCCACCA
CTGAGGGAGGGAGGGAGGAAGGGCAAGCAGCTGCTGCTGGTGCCGCTACT
TCTCCTGCTGCTCTTGTTGGCAAGACGACTGCCGAAAGCCCAGCCGAGAC
TTGCTACCACGCAGTGATGTGCAAGGAGTGGAGGGCAGTGGCAACAGAAG
CAGCAGCAGCAGCAGGAGGAGAGGAGGCGGACGGGATGCCCCAACCACCA
CCTCCACCACCGCCAAGACAAACAAGACGGCGGCGAACCTCCTTTGTCCA
CGCCCTCCTCCTTCCCCTCGCCCTCTTCCTCCTCCTCCTTCCCCCCGTCC
TTGATGCCACCGCCTTGCCTCGGGCCTTGTTTCACCACTTTCGCCTCACA
ATGAATGGACACCGCTGGCTTGCTGACGGAGGACTATCCGCTATTCTTCT
CTCTCTCCCTTCCTCCCCTCCTCCCTCCCATCCTCGATCCCTGCTAGCCG
CTCCTGCCACTGGTGAGGCTGGTAGCGATGCTGCTGGTGCGGCGGGAATG
AGTGAGAAAATGACGGAGGAAGCAAAAAGAATGGCAGAGAATGAGAGGAA
CTCCAAGACTGCTTCTCTCATCACTCCTCCCACCACTGAGGGAGGGAGGG
AGGAAGGGCAAGCAGCTGCTGCTGGTGCCGCTACTTCTCCTGCTGCTCTT
GTTGGCAAGACGACTGCCGAAAGCCCAGCCGAGACTTGCTACCACGCAGT
GATGTGCAAGGAGTGGAGGGCAGTGGCAACAGAAGCAGCAGCAGCAGCAG
GAGGAGAGGAGGCGGACGGG
back to top
Synonyms
Publications